Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007512

Physical Location & Seq

Genomic Coordinates Forward (+)

5794960 .. 5800995

Gene Structure 6036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0075500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2922 bp

ATGACGTCTCTGGCTCTAACCTTTCTGGGAGGAGCCCCTTTTCAACTGCTGTATGAAGGCGTTAAGAAAGCTATTCGCAAAAGTAACAAGTTTAGAACTCACCTCGAAAATCTGGAAATGACGCTAGGCTGTTTGCAACCATGGATCATTCAACAGATAAGAGCAAATAATGTGCAACTGAATCTCCCAAACAATTTGATACAAGATCTTGAAATAAAAATGGAGGAGGGCAAAGAGCTGGTTTACAAGTTATCAAGGCTTGGCGTTTGGAACATCCGTGTCTGGGGAAATTGCTACAATTGTATAAAGCCTAATTACTCAGACCAACTTGCTGAATTGGACAGATCTCTTAGATTACTATTAGAAATACTAAAGCTGGAGGAAATGAGGAATGTTCAGGAGAACTTACTATTGGCGAGGAACCACAGTGACAAACAAGATGATTTGGACAAAAAAATGTCCGAGTTATTGAAAGTGCACCAGGAAGTTCTGAAAGCGCAGAAAGAAATGTTTGATATGATGAGAGTGCAGCATGAGGCTGTACATGAGGCAATGCAGAGAATTAGAGCTGATGCTGTGCAAAATGTGCGAGGAGAAACTGCCCCTGCTCCAGCTCCAGCTCTAAGAATAGTATTTTGGGTGCTGTATGATGTTGTTATACAAGTGAAGGTCAAGAATACAATGTGTAAACGCCTCCTTCAAGAATTCAAATCCACGCTCGACTTCTTAAAACCACTGATAGAAGAAATGGCAGAAAGTAACAAACTATTGCATCTTCCGGAGCAGGAACAAGAGAAGTTTATTATTCAAATGAGGGAGGGTGTAGAGCTCATTGACAAGTGCTCCAAGGTTAGCAAGTGGCATAGTTACAAAAAGTATGCATGCACCAACAAACTTCTTAAATTAGATGAATCTCTCCGGGGGCTATTCCATAAAATGAGTATGCAGATTGCAATCCATGTGAAGGAAGGTTTGATTTCGATAAGTAGTATGGAGGCAATGATCAAGAAAATTGAAGAGAGTGGTGTGATACAAAATCAAATTCAAGTTGTACTCACTAAACCACAACCTCCACTGCATGAAGCTGGATTGGATGTTCTGGATACGCATGGAAGTAAGGATGTGGAGGGAACAAGAGATGATTTAAATGAGAAAGAGGTTGGCGTGAAGCAAATTGGAAGAGATGGTACGAGACAGAATGAAAAAGAGATTGAAGGTTTGAGTGAAGTACCTGAAACTTCATCGCCTAAAACTACATTGGATGTGCAAGGAACAAAGGATATAAATGAGTCACTAGATTCAGAAAGTGTACATATAGCGCAGACCAAGCAAAGTCAAGGGACAAGGGTGGTTGAAGCTCCAGTTGCTGAATATAAATTTCCATTCCTTATGGTTGAATGGGATGTGCATTTGAGGGAATTAAAGAATAAGATTTTTGAGGATCAGGTGGCTATGCTTGTGATTACAGGTCCAGCAGGATGCGGGAAAACCACACTGGCAAGAATGTTTTGTGAAGATCAGGAGGTCAAAATGAAATTCAAGAATATTTTCTTTGTCCATGTTTCAGAAAATCCCAGCTTGGATTTTATTGTCCAACAACTATATGAACAAAAGGATCCAGTGGTACTTGAGCTGCAAGAAGATGCAGTTTACTGGCTGCAACAATTTCTAAAGGAAACAGGAGGAGATCCTTCATTGTTGGTCTTGGATGATGTTTGGTCCGGATCAGAATCTCTTCTTGAAAAGTTTGATGAATTAAGAACTTCAATGCACAAGATTTTGGTGACATCAAGATCTGAATTTCCACGATTTGGTTGTCTCTATTATCTAGAAAGCCTAAAATCACTGGATGATGAAGAGGAAATGTCTCGTCTTAAGGGAAAGGTTGTGGCGGCCGTGAGAGCTACAGGGGACTACCCAGAAAGAGTGGGCAAACCTATATGTGAGTATTATTTAAAGACTGGGACCTGTAAATTTGGTCCGTCCTGCAAGTTCCATCATCCGAAACAGGGAATTGGATACTTGAGCTCTTTGTATGGACTGACACAGCTATCTTCTCCCACCCATGCCCTTGAAAGACCTTATACCTCTGTCGCACCATCATCTGTTGGCCCTTCTAGCAGCAGCCCGAATGAACAAGCCTTCCCAGAGAGGCCTGGAAAACCTGAATGCCAGTATTACCTGAGAACTGGAGACTGTAAATTTGGACCCTCATGTCGGTACCACCATCCTCGAGATCGGATTGCACCAAGGACAAATTGTCTCCTCAGTCCAGTTGGTCTTCTTGGCAATTCAGGCTCTAATGCTTGGCCTTCATTCAGTCAAATGTCATTGTCAATGGAAGATTTTCAGACGTCTTTGGATTTGAAATTGAATGCTCAGCATTGCCTTCTCCAGACACCAATGTCACCTTGTGTATCCATAAGTCGAAGAATAAGCAGCAATGACAAGTCCAGTCAGTCAGATGTAGAGGATAAGAGTGAGCTTGATGAGATTCAAAGCCAAATTTCAGGTGTCACTGTTCCGGAGTCGCTACATGATCCACTTGAAAGTAAAGATCGATGTCCAATGAATGTGAACAACACTTTGGAATATGCAACTTCAGGGACAACTCCGAATTCAGTTAACGTTGATGGTCAGTCTGTTGCTTGTAACAGCATAGGTGAGATTGGAAGCATATCACAGAAGCAGGGAGTTAAAGAAAAAGTTGCATTTAGAACAAAATCAGAGGTCGAGATATTGGATGATGGATTCAAATGGAGGAAGTATGGGAAAAAACTTGGGAAGAACAGCACAAATCCAAGGAATTACTATAAGTGTGCATATGAAGGCTGCCCAGTGAAAAAGAGAGTTGAAAGAGATAGACAAGATCCAAGTTATGTAATTACATGTTATGATGGGGTTCATAACCATACAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000268 GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0031090 GO:0031903 GO:0033036 GO:0033218 GO:0033328 GO:0033365 GO:0034613 GO:0042277 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex19

Protein Analysis

973

Amino Acids

110.29

Weight (kDa)

6.24

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	11 - 137	6.1e-13	Arabidopsis broad-spectrum mildew resistance protein RPW8
RPW8	PF05659	206 - 336	3.9e-20	Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC	PF00931	470 - 600	1.7e-14	NB-ARC domain
AAA_22	PF13401	484 - 583	1e-06	AAA domain
zf-CCCH	PF00642	645 - 669	9.9e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	720 - 745	9.2e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
WRKY	PF03106	915 - 971	7.9e-22	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18900 FvH4_5g18920 FvH4_5g18920 FvH4_5g18920 FvH4_5g30431
rosa_chinensis	RchiOBHm_Chr5g0049741 RchiOBHm_Chr7g0203281 RchiOBHm_Chr7g0203291 RchiOBHm_Chr7g0203311
rosa_laevigata	RLG00000003536 RLG00000003537 RLG00000017197
rosa_multiflora	Rmu_sc0003347.1_g000001 Rmu_sc0003582.1_g000005 Rmu_sc0008159.1_g000009
rosa_roxburghii	Rroxscaffold_1G00027270 Rroxscaffold_5G00335690
rosa_rugosa	Rorug03G0310100 Rorug07G0075500
rosa_samantha	Rh2CG308700 Rh7AG205100 Rh7BG204500 Rh7CG216200 Rh7CG216300
rosa_wichuraiana	Rw7G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	2214, 2404
AatII	GACGTC	2 cut(s)	8, 2357
Acc65I	GGTACC	1 cut(s)	2220
AccB1I	GGYRCC	1 cut(s)	2220
AccB7I	CCANNNNNTGG	1 cut(s)	1811
AccIII	TCCGGA	3 cut(s)	778, 1721, 2524
AciI	CCGC	2 cut(s)	1482, 1892
AclI	AACGTT	1 cut(s)	2628
AclWI	GGATC	8 cut(s)	152, 1449, 1610, 1623, 1682, 1732, 2534, 2864
AcoI	YGGCCR	1 cut(s)	1893
AcsI	RAATTY	9 cut(s)	704, 1041, 1376, 1535, 1799, 1973, 2201, 2505, 2617
AcuI	CTGAAG	1 cut(s)	2586
AcyI	GRCGYC	2 cut(s)	5, 2354
AdeI	CACNNNGTG	1 cut(s)	2414
AfaI	GTAC	7 cut(s)	543, 1053, 1189, 1230, 1311, 1626, 2222
AfiI	CCNNNNNNNGG	5 cut(s)	283, 964, 1811, 2009, 2217
AflII	CTTAAG	1 cut(s)	1874
AflIII	ACRYGT	1 cut(s)	2888
AhdI	GACNNNNNGTC	1 cut(s)	2259
AjnI	CCWGG	2 cut(s)	480, 2155
AjuI	GAANNNNNNNTTGG	6 cut(s)	395, 427, 619, 651, 2570, 2602
AloI	GAACNNNNNNTCC	4 cut(s)	1080, 1112, 2127, 2159
Alw21I	GWGCWC	4 cut(s)	480, 831, 845, 2030
Alw26I	GTCTC	6 cut(s)	12, 1186, 1823, 1872, 2187, 2267
Alw44I	GTGCAC	1 cut(s)	476
AlwI	GGATC	8 cut(s)	152, 1449, 1610, 1623, 1682, 1732, 2534, 2864
AlwNI	CAGNNNCTG	1 cut(s)	1367
Ama87I	CYCGRG	1 cut(s)	2232
Aor13HI	TCCGGA	3 cut(s)	778, 1721, 2524
AoxI	GGCC	4 cut(s)	1893, 2110, 2153, 2309
ApaLI	GTGCAC	1 cut(s)	476
ApeKI	GCWGC	7 cut(s)	529, 1633, 1657, 2121, 2124, 2439, 2832
ApoI	RAATTY	9 cut(s)	704, 1041, 1376, 1535, 1799, 1973, 2201, 2505, 2617
ArsI	GACNNNNNNTTYG	2 cut(s)	2186, 2218
Asp700I	GAANNNNTTC	3 cut(s)	1547, 1734, 2346
Asp718I	GGTACC	1 cut(s)	2220
AspLEI	GCGC	2 cut(s)	499, 1321
AspS9I	GGNCC	6 cut(s)	1469, 1719, 1965, 1979, 2111, 2207
AsuC2I	CCSGG	1 cut(s)	920
AsuHPI	GGTGA	4 cut(s)	92, 1795, 2400, 2675
AvaI	CYCGRG	1 cut(s)	2232
AvaII	GGWCC	5 cut(s)	1469, 1719, 1965, 1979, 2207
BaeGI	GKGCMC	1 cut(s)	480
BamHI	GGATCC	1 cut(s)	1615
BanI	GGYRCC	1 cut(s)	2220
BanII	GRGCYC	3 cut(s)	37, 831, 2030
BarI	GAAGNNNNNNTAC	2 cut(s)	1171, 1203
BbsI	GAAGAC	1 cut(s)	2273
Bbv12I	GWGCWC	4 cut(s)	480, 831, 845, 2030
BbvI	GCAGC	7 cut(s)	541, 1620, 1644, 2133, 2136, 2451, 2819
BccI	CCATC	7 cut(s)	1178, 2004, 2107, 2235, 2627, 2741, 2891
BceAI	ACGGC	1 cut(s)	1880
BciT130I	CCWGG	2 cut(s)	482, 2157
BciVI	GTATCC	3 cut(s)	1096, 2012, 2428
BclI	TGATCA	1 cut(s)	1002
BcnI	CCSGG	1 cut(s)	920
BcoDI	GTCTC	6 cut(s)	12, 1186, 1823, 1872, 2187, 2267
BfaI	CTAG	5 cut(s)	125, 1295, 1829, 2118, 2920
BfmI	CTRYAG	1 cut(s)	1905
BfrI	CTTAAG	1 cut(s)	1874
BfuI	GTATCC	3 cut(s)	1096, 2012, 2428
BglII	AGATCT	3 cut(s)	205, 344, 1793
BisI	GCNGC	8 cut(s)	530, 1634, 1658, 1893, 2122, 2125, 2440, 2833
BlpI	GCTNAGC	1 cut(s)	2379
BlsI	GCNGC	8 cut(s)	531, 1635, 1659, 1894, 2123, 2126, 2441, 2834
Bme1390I	CCNGG	3 cut(s)	482, 920, 2157
Bme18I	GGWCC	5 cut(s)	1469, 1719, 1965, 1979, 2207
BmeRI	GACNNNNNGTC	1 cut(s)	2259
BmeT110I	CYCGRG	1 cut(s)	2232
BmgT120I	GGNCC	6 cut(s)	1469, 1719, 1965, 1979, 2111, 2207
BmiI	GGNNCC	6 cut(s)	34, 422, 1617, 1966, 2209, 2222
BmrFI	CCNGG	3 cut(s)	482, 920, 2157
BmrI	ACTGGG	2 cut(s)	1971, 2831
BmsI	GCATC	4 cut(s)	562, 781, 1469, 1633
BmuI	ACTGGG	2 cut(s)	1971, 2831
BpiI	GAAGAC	1 cut(s)	2273
BpmI	CTGGAG	6 cut(s)	398, 594, 600, 1344, 2211, 2378
Bpu1102I	GCTNAGC	1 cut(s)	2379
BpuEI	CTTGAG	2 cut(s)	1649, 2044
BpuMI	CCSGG	1 cut(s)	920
Bsa29I	ATCGAT	1 cut(s)	2560
BsaBI	GATNNNNATC	2 cut(s)	953, 1729
BsaHI	GRCGYC	2 cut(s)	5, 2354
BsaJI	CCNNGG	5 cut(s)	140, 846, 919, 2249, 2801
BsaWI	WCCGGW	3 cut(s)	778, 1721, 2524
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 198, 827, 857
Bsc4I	CCNNNNNNNGG	5 cut(s)	283, 964, 1811, 2009, 2217
Bse3DI	GCAATG	4 cut(s)	558, 1005, 2383, 2449
Bse8I	GATNNNNATC	2 cut(s)	953, 1729
BseAI	TCCGGA	3 cut(s)	778, 1721, 2524
BseBI	CCWGG	2 cut(s)	482, 2157
BseCI	ATCGAT	1 cut(s)	2560
BseDI	CCNNGG	5 cut(s)	140, 846, 919, 2249, 2801
BseJI	GATNNNNATC	2 cut(s)	953, 1729
BseLI	CCNNNNNNNGG	5 cut(s)	283, 964, 1811, 2009, 2217
BseMI	GCAATG	4 cut(s)	558, 1005, 2383, 2449
BseMII	CTCAG	4 cut(s)	333, 2174, 2281, 2393
BseRI	GAGGAG	5 cut(s)	45, 239, 606, 1698, 2255
BseSI	GKGCMC	1 cut(s)	480
BseX3I	CGGCCG	1 cut(s)	1893
BseXI	GCAGC	7 cut(s)	541, 1620, 1644, 2133, 2136, 2451, 2819
BseYI	CCCAGC	1 cut(s)	1574
BsgI	GTGCAG	1 cut(s)	548
Bsh1285I	CGRYCG	1 cut(s)	1896
BshFI	GGCC	4 cut(s)	1895, 2112, 2155, 2311
BshNI	GGYRCC	1 cut(s)	2220
BshVI	ATCGAT	1 cut(s)	2560
BsiEI	CGRYCG	1 cut(s)	1896
BsiHKAI	GWGCWC	4 cut(s)	480, 831, 845, 2030
BsiHKCI	CYCGRG	1 cut(s)	2232
BsiSI	CCGG	4 cut(s)	779, 919, 1722, 2525
BslFI	GGGAC	4 cut(s)	1354, 1925, 1978, 2620
BslI	CCNNNNNNNGG	5 cut(s)	283, 964, 1811, 2009, 2217
BsmAI	GTCTC	6 cut(s)	12, 1186, 1823, 1872, 2187, 2267
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	4 cut(s)	1354, 1925, 1978, 2620
BsmI	GAATGC	2 cut(s)	2174, 2380
BsnI	GGCC	4 cut(s)	1895, 2112, 2155, 2311
BsoBI	CYCGRG	1 cut(s)	2232
Bsp1286I	GDGCHC	5 cut(s)	37, 480, 831, 845, 2030
Bsp13I	TCCGGA	3 cut(s)	778, 1721, 2524
Bsp1407I	TGTACA	2 cut(s)	541, 1309
Bsp1720I	GCTNAGC	1 cut(s)	2379
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	2 cut(s)	1482, 1892
BspANI	GGCC	4 cut(s)	1895, 2112, 2155, 2311
BspCNI	CTCAG	4 cut(s)	332, 2175, 2280, 2392
BspDI	ATCGAT	1 cut(s)	2560
BspEI	TCCGGA	3 cut(s)	778, 1721, 2524
BspLI	GGNNCC	6 cut(s)	34, 422, 1617, 1966, 2209, 2222
BspPI	GGATC	8 cut(s)	152, 1449, 1610, 1623, 1682, 1732, 2534, 2864
BspT107I	GGYRCC	1 cut(s)	2220
BspTI	CTTAAG	1 cut(s)	1874
BsrDI	GCAATG	4 cut(s)	558, 1005, 2383, 2449
BsrGI	TGTACA	2 cut(s)	541, 1309
BssECI	CCNNGG	5 cut(s)	140, 846, 919, 2249, 2801
BssNI	GRCGYC	2 cut(s)	5, 2354
BssT1I	CCWWGG	4 cut(s)	140, 846, 2249, 2801
Bst2UI	CCWGG	2 cut(s)	482, 2157
Bst4CI	ACNGT	3 cut(s)	428, 2198, 2521
Bst6I	CTCTTC	4 cut(s)	1011, 1174, 1740, 1851
BstACI	GRCGYC	2 cut(s)	5, 2354
BstAFI	CTTAAG	1 cut(s)	1874
BstAPI	GCANNNNNTGC	1 cut(s)	586
BstAUI	TGTACA	2 cut(s)	541, 1309
BstC8I	GCNNGC	1 cut(s)	883
BstDEI	CTNAG	6 cut(s)	319, 350, 623, 2183, 2267, 2379
BstDSI	CCRYGG	1 cut(s)	140
BstHHI	GCGC	2 cut(s)	499, 1321
BstMAI	GTCTC	6 cut(s)	12, 1186, 1823, 1872, 2187, 2267
BstMCI	CGRYCG	1 cut(s)	1896
BstMWI	GCNNNNNNNGC	6 cut(s)	586, 1327, 1364, 1901, 2118, 2295
BstNI	CCWGG	2 cut(s)	482, 2157
BstNSI	RCATGY	2 cut(s)	885, 2892
BstSCI	CCNGG	3 cut(s)	480, 918, 2155
BstSFI	CTRYAG	1 cut(s)	1905
BstSLI	GKGCMC	1 cut(s)	480
BstV1I	GCAGC	7 cut(s)	541, 1620, 1644, 2133, 2136, 2451, 2819
BstV2I	GAAGAC	1 cut(s)	2273
BstX2I	RGATCY	6 cut(s)	205, 344, 1615, 1687, 1793, 2869
BstYI	RGATCY	6 cut(s)	205, 344, 1615, 1687, 1793, 2869
BstZI	CGGCCG	1 cut(s)	1893
Bsu15I	ATCGAT	1 cut(s)	2560
BsuI	GTATCC	3 cut(s)	1096, 2012, 2428
BsuRI	GGCC	4 cut(s)	1895, 2112, 2155, 2311
BsuTUI	ATCGAT	1 cut(s)	2560
BtgI	CCRYGG	1 cut(s)	140
BtgZI	GCGATG	1 cut(s)	1227
BtsI	GCAGTG	1 cut(s)	1073
BtsIMutI	CAGTG	8 cut(s)	433, 734, 1073, 1493, 1626, 1844, 2517, 2844
Cac8I	GCNNGC	1 cut(s)	883
CaiI	CAGNNNCTG	1 cut(s)	1367
CfoI	GCGC	2 cut(s)	499, 1321
Cfr13I	GGNCC	6 cut(s)	1469, 1719, 1965, 1979, 2111, 2207
ClaI	ATCGAT	1 cut(s)	2560
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	7 cut(s)	542, 1052, 1188, 1229, 1310, 1625, 2221
CviQI	GTAC	7 cut(s)	542, 1052, 1188, 1229, 1310, 1625, 2221
DdeI	CTNAG	6 cut(s)	319, 350, 623, 2183, 2267, 2379
DraI	TTTAAA	2 cut(s)	1146, 1956
DraIII	CACNNNGTG	1 cut(s)	2414
DrdI	GACNNNNNNGTC	2 cut(s)	2214, 2404
DriI	GACNNNNNGTC	1 cut(s)	2259
DseDI	GACNNNNNNGTC	2 cut(s)	2214, 2404
EaeI	YGGCCR	1 cut(s)	1893
EagI	CGGCCG	1 cut(s)	1893
Eam1104I	CTCTTC	4 cut(s)	1011, 1174, 1740, 1851
Eam1105I	GACNNNNNGTC	1 cut(s)	2259
EarI	CTCTTC	4 cut(s)	1011, 1174, 1740, 1851
Ecl136II	GAGCTC	2 cut(s)	829, 2028
EclXI	CGGCCG	1 cut(s)	1893
Eco130I	CCWWGG	4 cut(s)	140, 846, 2249, 2801
Eco147I	AGGCCT	1 cut(s)	2155
Eco24I	GRGCYC	3 cut(s)	37, 831, 2030
Eco47I	GGWCC	5 cut(s)	1469, 1719, 1965, 1979, 2207
Eco52I	CGGCCG	1 cut(s)	1893
Eco53kI	GAGCTC	2 cut(s)	829, 2028
Eco57I	CTGAAG	1 cut(s)	2586
Eco88I	CYCGRG	1 cut(s)	2232
EcoICRI	GAGCTC	2 cut(s)	829, 2028
EcoO109I	RGGNCCY	1 cut(s)	1965
EcoRI	GAATTC	2 cut(s)	704, 2617
EcoRII	CCWGG	2 cut(s)	480, 2155
EcoT14I	CCWWGG	4 cut(s)	140, 846, 2249, 2801
EcoT22I	ATGCAT	1 cut(s)	883
EcoT38I	GRGCYC	3 cut(s)	37, 831, 2030
ErhI	CCWWGG	4 cut(s)	140, 846, 2249, 2801
Esp3I	CGTCTC	1 cut(s)	12
FaqI	GGGAC	4 cut(s)	1354, 1925, 1978, 2620
FauI	CCCGC	1 cut(s)	1475
FauNDI	CATATG	1 cut(s)	2824
FbaI	TGATCA	1 cut(s)	1002
Fnu4HI	GCNGC	8 cut(s)	530, 1634, 1658, 1893, 2122, 2125, 2440, 2833
FriOI	GRGCYC	3 cut(s)	37, 831, 2030
Fsp4HI	GCNGC	8 cut(s)	530, 1634, 1658, 1893, 2122, 2125, 2440, 2833
FspBI	CTAG	5 cut(s)	125, 1295, 1829, 2118, 2920
GlaI	GCGC	2 cut(s)	498, 1320
GluI	GCNGC	8 cut(s)	530, 1634, 1658, 1893, 2122, 2125, 2440, 2833
GsaI	CCCAGC	1 cut(s)	1578
GsuI	CTGGAG	6 cut(s)	398, 594, 600, 1344, 2211, 2378
HaeIII	GGCC	4 cut(s)	1895, 2112, 2155, 2311
HapII	CCGG	4 cut(s)	779, 919, 1722, 2525
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	2 cut(s)	499, 1321
Hin1I	GRCGYC	2 cut(s)	5, 2354
Hin6I	GCGC	2 cut(s)	497, 1319
HinP1I	GCGC	2 cut(s)	497, 1319
HincII	GTYRAC	1 cut(s)	2626
HindII	GTYRAC	1 cut(s)	2626
HinfI	GANTC	8 cut(s)	181, 911, 1289, 1298, 1730, 2494, 2528, 2751
HpaI	GTTAAC	1 cut(s)	2626
HpaII	CCGG	4 cut(s)	779, 919, 1722, 2525
HphI	GGTGA	4 cut(s)	92, 1795, 2400, 2675
Hpy166II	GTNNAC	7 cut(s)	244, 478, 689, 1310, 1651, 2578, 2626
Hpy8I	GTNNAC	7 cut(s)	244, 478, 689, 1310, 1651, 2578, 2626
HpyCH4III	ACNGT	3 cut(s)	428, 2198, 2521
HpyCH4IV	ACGT	3 cut(s)	5, 2354, 2628
HpyF10VI	GCNNNNNNNGC	6 cut(s)	586, 1327, 1364, 1901, 2118, 2295
HpyF3I	CTNAG	6 cut(s)	319, 350, 623, 2183, 2267, 2379
HpySE526I	ACGT	3 cut(s)	5, 2354, 2628
Hsp92I	GRCGYC	2 cut(s)	5, 2354
HspAI	GCGC	2 cut(s)	497, 1319
Kpn2I	TCCGGA	3 cut(s)	778, 1721, 2524
KpnI	GGTACC	1 cut(s)	2224
Ksp22I	TGATCA	1 cut(s)	1002
KspAI	GTTAAC	1 cut(s)	2626
LmnI	GCTCC	6 cut(s)	32, 613, 619, 781, 848, 1363
Lsp1109I	GCAGC	7 cut(s)	541, 1620, 1644, 2133, 2136, 2451, 2819
LweI	GCATC	4 cut(s)	562, 781, 1469, 1633
MaeI	CTAG	5 cut(s)	125, 1295, 1829, 2118, 2920
MaeII	ACGT	3 cut(s)	5, 2354, 2628
MaeIII	GTNAC	9 cut(s)	83, 428, 758, 866, 1290, 1783, 2406, 2515, 2651
MfeI	CAATTG	1 cut(s)	298
MflI	RGATCY	6 cut(s)	205, 344, 1615, 1687, 1793, 2869
MhlI	GDGCHC	5 cut(s)	37, 480, 831, 845, 2030
MlyI	GAGTC	2 cut(s)	1298, 2537
MmeI	TCCRAC	1 cut(s)	1618
Mph1103I	ATGCAT	1 cut(s)	883
MroI	TCCGGA	3 cut(s)	778, 1721, 2524
MroXI	GAANNNNTTC	3 cut(s)	1547, 1734, 2346
MspCI	CTTAAG	1 cut(s)	1874
MspI	CCGG	4 cut(s)	779, 919, 1722, 2525
MspR9I	CCNGG	3 cut(s)	482, 920, 2157
MunI	CAATTG	1 cut(s)	298
Mva1269I	GAATGC	2 cut(s)	2174, 2380
MvaI	CCWGG	2 cut(s)	482, 2157
MwoI	GCNNNNNNNGC	6 cut(s)	586, 1327, 1364, 1901, 2118, 2295
NciI	CCSGG	1 cut(s)	920
NcoI	CCATGG	1 cut(s)	140
NdeI	CATATG	1 cut(s)	2824
NlaIV	GGNNCC	6 cut(s)	34, 422, 1617, 1966, 2209, 2222
NmuCI	GTSAC	5 cut(s)	428, 1290, 1783, 2406, 2515
NsiI	ATGCAT	1 cut(s)	883
NspI	RCATGY	2 cut(s)	885, 2892
PaeI	GCATGC	1 cut(s)	885
PaeR7I	CTCGAG	1 cut(s)	2232
PceI	AGGCCT	1 cut(s)	2155
PciI	ACATGT	1 cut(s)	2888
PctI	GAATGC	2 cut(s)	2174, 2380
PdmI	GAANNNNTTC	3 cut(s)	1547, 1734, 2346
PfeI	GAWTC	6 cut(s)	181, 911, 1298, 1730, 2494, 2751
PflMI	CCANNNNNTGG	1 cut(s)	1811
PkrI	GCNGC	8 cut(s)	531, 1635, 1659, 1894, 2123, 2126, 2441, 2834
PleI	GAGTC	2 cut(s)	1297, 2536
PpsI	GAGTC	2 cut(s)	1297, 2536
PpuMI	RGGWCCY	1 cut(s)	1965
PscI	ACATGT	1 cut(s)	2888
Psp124BI	GAGCTC	2 cut(s)	831, 2030
Psp1406I	AACGTT	1 cut(s)	2628
Psp5II	RGGWCCY	1 cut(s)	1965
Psp6I	CCWGG	2 cut(s)	480, 2155
PspFI	CCCAGC	1 cut(s)	1574
PspGI	CCWGG	2 cut(s)	480, 2155
PspN4I	GGNNCC	6 cut(s)	34, 422, 1617, 1966, 2209, 2222
PspPI	GGNCC	6 cut(s)	1469, 1719, 1965, 1979, 2111, 2207
PspPPI	RGGWCCY	1 cut(s)	1965
PstNI	CAGNNNCTG	1 cut(s)	1367
PsuI	RGATCY	6 cut(s)	205, 344, 1615, 1687, 1793, 2869
RsaI	GTAC	7 cut(s)	543, 1053, 1189, 1230, 1311, 1626, 2222
RsaNI	GTAC	7 cut(s)	542, 1052, 1188, 1229, 1310, 1625, 2221
SacI	GAGCTC	2 cut(s)	831, 2030
SatI	GCNGC	8 cut(s)	530, 1634, 1658, 1893, 2122, 2125, 2440, 2833
Sau96I	GGNCC	6 cut(s)	1469, 1719, 1965, 1979, 2111, 2207
SchI	GAGTC	2 cut(s)	1298, 2537
ScrFI	CCNGG	3 cut(s)	482, 920, 2157
SduI	GDGCHC	5 cut(s)	37, 480, 831, 845, 2030
SfaNI	GCATC	4 cut(s)	562, 781, 1469, 1633
SfcI	CTRYAG	1 cut(s)	1905
Sfr274I	CTCGAG	1 cut(s)	2232
SinI	GGWCC	5 cut(s)	1469, 1719, 1965, 1979, 2207
SlaI	CTCGAG	1 cut(s)	2232
SmiI	ATTTAAAT	1 cut(s)	1146
SmlI	CTYRAG	4 cut(s)	1628, 1874, 2023, 2232
SmoI	CTYRAG	4 cut(s)	1628, 1874, 2023, 2232
SphI	GCATGC	1 cut(s)	885
SseBI	AGGCCT	1 cut(s)	2155
SsiI	CCGC	2 cut(s)	1482, 1892
SspI	AATATT	1 cut(s)	1546
SspMI	CTAG	5 cut(s)	125, 1295, 1829, 2118, 2920
SstI	GAGCTC	2 cut(s)	831, 2030
StuI	AGGCCT	1 cut(s)	2155
StyD4I	CCNGG	3 cut(s)	480, 918, 2155
StyI	CCWWGG	4 cut(s)	140, 846, 2249, 2801
SwaI	ATTTAAAT	1 cut(s)	1146
TaaI	ACNGT	3 cut(s)	428, 2198, 2521
TaiI	ACGT	3 cut(s)	8, 2357, 2631
TaqI	TCGA	7 cut(s)	105, 720, 980, 2233, 2428, 2560, 2733
TatI	WGTACW	3 cut(s)	541, 1051, 1309
TauI	GCSGC	1 cut(s)	1895
TfiI	GAWTC	6 cut(s)	181, 911, 1298, 1730, 2494, 2751
TscAI	CASTG	8 cut(s)	433, 741, 1080, 1500, 1626, 1851, 2524, 2844
TseFI	GTSAC	5 cut(s)	428, 1290, 1783, 2406, 2515
TseI	GCWGC	7 cut(s)	529, 1633, 1657, 2121, 2124, 2439, 2832
Tsp45I	GTSAC	5 cut(s)	428, 1290, 1783, 2406, 2515
TspGWI	ACGGA	2 cut(s)	266, 1971
TspRI	CASTG	8 cut(s)	433, 741, 1080, 1500, 1626, 1851, 2524, 2844
Van91I	CCANNNNNTGG	1 cut(s)	1811
Vha464I	CTTAAG	1 cut(s)	1874
VneI	GTGCAC	1 cut(s)	476
VpaK11BI	GGWCC	5 cut(s)	1469, 1719, 1965, 1979, 2207
XapI	RAATTY	9 cut(s)	704, 1041, 1376, 1535, 1799, 1973, 2201, 2505, 2617
XbaI	TCTAGA	1 cut(s)	1828
XceI	RCATGY	2 cut(s)	885, 2892
XhoI	CTCGAG	1 cut(s)	2232
XmnI	GAANNNNTTC	3 cut(s)	1547, 1734, 2346
XspI	CTAG	5 cut(s)	125, 1295, 1829, 2118, 2920
ZraI	GACGTC	2 cut(s)	6, 2355
Zsp2I	ATGCAT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.