Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008159.1

Orthogroup ID

OG0007512

Physical Location & Seq

Genomic Coordinates Forward (+)

32054 .. 33990

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008159.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgagaaagagcttcaaaaacttgaacttagaaagaggaaaatcatctcctctctgctgctttgcgtctcaatctgatggaactatggaagtgagggatgagctcgagcagctgctggatgatgatgatgatatggccgacctttacttgtcaagaaagttgattaagcatttggttgtttttgcaatgtacttgagaaatgattttgaggctgagctcaaagaggctgttaatggactaaaatcaacaactgaacaacctagggaggatggttgtggcaaggatctgataacgaagttcgcaatgcagcttgagttacaagctgcagttcagagaaatcaggatgagcttaaagaggttgttaaaaaagtaggaataaggaaggaatgggtggagaatacgttgaagcagattgaggaactggaaacaagggctgaatgggtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

148

Amino Acids

17.16

Weight (kDa)

4.91

Isoelectric Point (pI)

25.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18900 FvH4_5g18920 FvH4_5g18920 FvH4_5g18920 FvH4_5g30431
rosa_chinensis	RchiOBHm_Chr5g0049741 RchiOBHm_Chr7g0203281 RchiOBHm_Chr7g0203291 RchiOBHm_Chr7g0203311
rosa_laevigata	RLG00000003536 RLG00000003537 RLG00000017197
rosa_multiflora	Rmu_sc0003347.1_g000001 Rmu_sc0003582.1_g000005 Rmu_sc0008159.1_g000009
rosa_roxburghii	Rroxscaffold_1G00027270 Rroxscaffold_5G00335690
rosa_rugosa	Rorug03G0310100 Rorug07G0075500
rosa_samantha	Rh2CG308700 Rh7AG205100 Rh7BG204500 Rh7CG216200 Rh7CG216300
rosa_wichuraiana	Rw7G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	291
AcoI	YGGCCR	1 cut(s)	135
AfaI	GTAC	1 cut(s)	191
AgsI	TTSAA	3 cut(s)	16, 25, 406
AluBI	AGCT	7 cut(s)	12, 103, 112, 217, 310, 323, 349
AluI	AGCT	7 cut(s)	12, 103, 112, 217, 310, 323, 349
Alw21I	GWGCWC	2 cut(s)	105, 219
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	291
AlwNI	CAGNNNCTG	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	5 cut(s)	57, 109, 112, 307, 323
AspA2I	CCTAGG	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	104
AvrII	CCTAGG	1 cut(s)	260
BanII	GRGCYC	2 cut(s)	105, 219
Bbv12I	GWGCWC	2 cut(s)	105, 219
BbvI	GCAGC	5 cut(s)	44, 99, 121, 310, 319
BccI	CCATC	2 cut(s)	71, 263
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	324
BisI	GCNGC	5 cut(s)	58, 110, 113, 308, 324
BlnI	CCTAGG	1 cut(s)	260
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	5 cut(s)	59, 111, 114, 309, 325
BmeT110I	CYCGRG	1 cut(s)	104
Bpu1102I	GCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	2 cut(s)	214, 332
BsaJI	CCNNGG	1 cut(s)	260
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bse1I	ACTGG	1 cut(s)	426
Bse3DI	GCAATG	2 cut(s)	192, 309
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	4 cut(s)	103, 124, 274, 349
BseMI	GCAATG	2 cut(s)	192, 309
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	5 cut(s)	44, 99, 121, 310, 319
BshFI	GGCC	1 cut(s)	137
BsiHKAI	GWGCWC	2 cut(s)	105, 219
BsiHKCI	CYCGRG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	72
BsmBI	CGTCTC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	105, 219
Bsp143I	GATC	1 cut(s)	283
Bsp1720I	GCTNAGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	328
BspPI	GGATC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	192, 309
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	28, 213
BstF5I	GGATG	4 cut(s)	103, 124, 274, 349
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	5 cut(s)	44, 99, 121, 310, 319
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	4 cut(s)	103, 124, 274, 349
CaiI	CAGNNNCTG	1 cut(s)	115
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	190
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	28, 213
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	135
Ecl136II	GAGCTC	2 cut(s)	103, 217
Eco130I	CCWWGG	1 cut(s)	260
Eco24I	GRGCYC	2 cut(s)	105, 219
Eco53kI	GAGCTC	2 cut(s)	103, 217
Eco88I	CYCGRG	1 cut(s)	104
EcoICRI	GAGCTC	2 cut(s)	103, 217
EcoT14I	CCWWGG	1 cut(s)	260
EcoT38I	GRGCYC	2 cut(s)	105, 219
ErhI	CCWWGG	1 cut(s)	260
Esp3I	CGTCTC	1 cut(s)	72
FaiI	YATR	2 cut(s)	86, 134
Fnu4HI	GCNGC	5 cut(s)	58, 110, 113, 308, 324
FokI	GGATG	4 cut(s)	110, 131, 281, 356
FriOI	GRGCYC	2 cut(s)	105, 219
Fsp4HI	GCNGC	5 cut(s)	58, 110, 113, 308, 324
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	5 cut(s)	58, 110, 113, 308, 324
HaeIII	GGCC	1 cut(s)	137
HgaI	GACGC	1 cut(s)	54
Hpy188I	TCNGA	3 cut(s)	76, 288, 333
Hpy188III	TCNNGA	2 cut(s)	153, 341
HpyAV	CCTTC	1 cut(s)	376
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	3 cut(s)	185, 307, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	2 cut(s)	28, 213
HpySE526I	ACGT	1 cut(s)	401
Kzo9I	GATC	1 cut(s)	283
LpnPI	CCDG	3 cut(s)	101, 326, 407
Lsp1109I	GCAGC	5 cut(s)	44, 99, 121, 310, 319
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	1 cut(s)	315
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	2 cut(s)	105, 219
MnlI	CCTC	8 cut(s)	29, 60, 87, 202, 217, 259, 349, 409
MseI	TTAA	4 cut(s)	165, 231, 351, 363
MspA1I	CMGCKG	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	104
PkrI	GCNGC	5 cut(s)	59, 111, 114, 309, 325
Psp124BI	GAGCTC	2 cut(s)	105, 219
PspXI	VCTCGAGB	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SacI	GAGCTC	2 cut(s)	105, 219
SaqAI	TTAA	4 cut(s)	165, 231, 351, 363
SatI	GCNGC	5 cut(s)	58, 110, 113, 308, 324
Sau3AI	GATC	1 cut(s)	283
SduI	GDGCHC	2 cut(s)	105, 219
SfcI	CTRYAG	1 cut(s)	324
Sfr274I	CTCGAG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	3 cut(s)	104, 193, 311
SmoI	CTYRAG	3 cut(s)	104, 193, 311
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	2 cut(s)	105, 219
StyI	CCWWGG	1 cut(s)	260
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	1 cut(s)	105
TatI	WGTACW	1 cut(s)	189
Tru1I	TTAA	4 cut(s)	165, 231, 351, 363
Tru9I	TTAA	4 cut(s)	165, 231, 351, 363
TseI	GCWGC	5 cut(s)	57, 109, 112, 307, 323
XhoI	CTCGAG	1 cut(s)	104
XmaJI	CCTAGG	1 cut(s)	260
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.