Rroxscaffold_5G00335690

magnesium transporter

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
3090311 .. 3091137
827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00335690.1

Sequence Viewer

Length: 192 bp
ATGGAAGCAATTTGTAGTTTTCTTGCTGTACGTACGACAGAACTGGAGACTGCTGCTTATCCGGCTCTAGATGAGCTTACCTCTAAGATTAGTAGCCGCAATTTGGATAGGGTTCGTAAATTGAAAAGTGCAATGACAAGGTTGACTGCACGGGTCCAAAAGGTATACAATCTTCCTCTGGTCTGTGAATGA

Protein Analysis

63

Amino Acids

7.12

Weight (kDa)

9.18

Isoelectric Point (pI)

20.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 165
AciI CCGC 1 cut(s) 97
AfaI GTAC 2 cut(s) 30, 34
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 154
AvaII GGWCC 1 cut(s) 154
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbvI GCAGC 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 68
BisI GCNGC 2 cut(s) 54, 97
BlsI GCNGC 2 cut(s) 55, 98
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpmI CTGGAG 1 cut(s) 65
BsaAI YACGTR 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 62
BsiWI CGTACG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 41
BspACI CCGC 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 1 cut(s) 48
BssNAI GTATAC 1 cut(s) 166
Bst1107I GTATAC 1 cut(s) 166
BstBAI YACGTR 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstSNI TACGTA 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 40
BstZ17I GTATAC 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 29, 33
CviJI RGCY 3 cut(s) 65, 76, 96
CviKI_1 RGCY 3 cut(s) 65, 76, 96
CviQI GTAC 2 cut(s) 29, 33
DdeI CTNAG 1 cut(s) 84
Eco105I TACGTA 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 154
FaiI YATR 1 cut(s) 166
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 2 cut(s) 54, 97
Fsp4HI GCNGC 2 cut(s) 54, 97
FspBI CTAG 1 cut(s) 68
GluI GCNGC 2 cut(s) 54, 97
GsuI CTGGAG 1 cut(s) 65
HapII CCGG 1 cut(s) 62
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HpaII CCGG 1 cut(s) 62
Hpy166II GTNNAC 2 cut(s) 144, 166
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 2 cut(s) 144, 166
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 131, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 31
LpnPI CCDG 3 cut(s) 29, 75, 164
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 31
MboII GAAGA 1 cut(s) 164
MluCI AATT 3 cut(s) 9, 100, 119
MnlI CCTC 2 cut(s) 91, 186
MspI CCGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 155
Pfl23II CGTACG 1 cut(s) 32
PkrI GCNGC 2 cut(s) 55, 98
Ppu21I YACGTR 1 cut(s) 32
PspLI CGTACG 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 155
PspPI GGNCC 1 cut(s) 154
RsaI GTAC 2 cut(s) 30, 34
RsaNI GTAC 2 cut(s) 29, 33
SatI GCNGC 2 cut(s) 54, 97
Sau96I GGNCC 1 cut(s) 154
SetI ASST 5 cut(s) 34, 78, 83, 143, 165
SgeI CNNG 7 cut(s) 35, 56, 74, 80, 150, 162, 164
SinI GGWCC 1 cut(s) 154
SnaBI TACGTA 1 cut(s) 32
Sse9I AATT 3 cut(s) 9, 100, 119
SsiI CCGC 1 cut(s) 97
SspMI CTAG 1 cut(s) 68
TaiI ACGT 1 cut(s) 34
TasI AATT 3 cut(s) 9, 100, 119
TauI GCSGC 1 cut(s) 99
TseI GCWGC 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 154
XbaI TCTAGA 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.