Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007512

Physical Location & Seq

Genomic Coordinates Reverse (-)

14031471 .. 14033234

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017197

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAGAGGAAGGAGGAAGAGCTTGATCGAGGAAGGATCGCAGCATGCTGGTTTGTGTTCAATGAAATTTCAGAGTGAAGAGGCTGAGCGCGAAGAGGCTGTTAATAGAATACAAACAAGGGCTGAATGGATGGAGAATGCGATGAAGGAGTTTAAGGATGAACTAACTGCATATGAGAGAGAAGTGCAGGCTGAGCTCAAAGAGGCTGTTAATGAACAAAAATCAACAACTGAACAACCTAGGGAATATGATTTTGGCAAGGATCTGAAAATGAAGTTGTTTAGAAATCACGATGAGTATAAAGAGTTTGTTAAAGGACTAGAAGCAAGGAAGAAATGGATAAAGAATACGATGAAGTTCATCTCAGCCATGGATGGATCGTATGAACCTTTAATGTCTAATGGAAGTGACGGTAATGAAATGCAATATAAGGGAGTTCGGTATGATAAGTTGTGTACAGAAGATCTTAAAGGCAGGAGTTTAAGACTGTGGAGGAAGCTGAGTCCTTTTACAATGCTTATGCAAAGGCCATGGGTTTTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

182

Amino Acids

21.5

Weight (kDa)

8.33

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18900 FvH4_5g18920 FvH4_5g18920 FvH4_5g18920 FvH4_5g30431
rosa_chinensis	RchiOBHm_Chr5g0049741 RchiOBHm_Chr7g0203281 RchiOBHm_Chr7g0203291 RchiOBHm_Chr7g0203311
rosa_laevigata	RLG00000003536 RLG00000003537 RLG00000017197
rosa_multiflora	Rmu_sc0003347.1_g000001 Rmu_sc0003582.1_g000005 Rmu_sc0008159.1_g000009
rosa_roxburghii	Rroxscaffold_1G00027270 Rroxscaffold_5G00335690
rosa_rugosa	Rorug03G0310100 Rorug07G0075500
rosa_samantha	Rh2CG308700 Rh7AG205100 Rh7BG204500 Rh7CG216200 Rh7CG216300
rosa_wichuraiana	Rw7G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	90
AclWI	GGATC	3 cut(s)	43, 270, 385
AcsI	RAATTY	1 cut(s)	65
AfaI	GTAC	1 cut(s)	457
AgsI	TTSAA	1 cut(s)	60
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AluBI	AGCT	3 cut(s)	21, 196, 499
AluI	AGCT	3 cut(s)	21, 196, 499
Alw21I	GWGCWC	1 cut(s)	198
AlwI	GGATC	3 cut(s)	43, 270, 385
AoxI	GGCC	1 cut(s)	527
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	1 cut(s)	65
AspA2I	CCTAGG	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	90
AvrII	CCTAGG	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	2 cut(s)	124, 368
BfaI	CTAG	2 cut(s)	240, 320
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	1 cut(s)	41
BlnI	CCTAGG	1 cut(s)	239
BlpI	GCTNAGC	2 cut(s)	84, 192
BlsI	GCNGC	1 cut(s)	42
Bpu1102I	GCTNAGC	2 cut(s)	84, 192
BsaJI	CCNNGG	3 cut(s)	239, 369, 530
BseDI	CCNNGG	3 cut(s)	239, 369, 530
BseGI	GGATG	3 cut(s)	135, 163, 379
BseMII	CTCAG	4 cut(s)	75, 183, 378, 491
BseXI	GCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	206
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	529
BsiHKAI	GWGCWC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp1407I	TGTACA	1 cut(s)	455
Bsp143I	GATC	5 cut(s)	24, 35, 262, 377, 463
Bsp1720I	GCTNAGC	2 cut(s)	84, 192
Bsp19I	CCATGG	2 cut(s)	369, 530
BspANI	GGCC	1 cut(s)	529
BspCNI	CTCAG	4 cut(s)	76, 184, 377, 492
BspFNI	CGCG	1 cut(s)	90
BspPI	GGATC	3 cut(s)	43, 270, 385
BspQI	GCTCTTC	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	455
BssECI	CCNNGG	3 cut(s)	239, 369, 530
BssMI	GATC	5 cut(s)	24, 35, 262, 377, 463
BssT1I	CCWWGG	3 cut(s)	239, 369, 530
Bst4CI	ACNGT	2 cut(s)	413, 489
Bst6I	CTCTTC	3 cut(s)	11, 72, 87
BstAUI	TGTACA	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	45, 189
BstDEI	CTNAG	4 cut(s)	84, 192, 364, 500
BstDSI	CCRYGG	2 cut(s)	369, 530
BstF5I	GGATG	3 cut(s)	135, 163, 379
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	5 cut(s)	27, 38, 265, 380, 466
BstMBI	GATC	5 cut(s)	24, 35, 262, 377, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	47
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	52
BstX2I	RGATCY	2 cut(s)	262, 463
BstYI	RGATCY	2 cut(s)	262, 463
BsuRI	GGCC	1 cut(s)	529
BtgI	CCRYGG	2 cut(s)	369, 530
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	3 cut(s)	135, 163, 379
Cac8I	GCNNGC	2 cut(s)	45, 189
CfoI	GCGC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	3 cut(s)	44, 370, 531
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	4 cut(s)	84, 192, 364, 500
DpnI	GATC	5 cut(s)	26, 37, 264, 379, 465
DpnII	GATC	5 cut(s)	24, 35, 262, 377, 463
Eam1104I	CTCTTC	3 cut(s)	11, 72, 87
EarI	CTCTTC	3 cut(s)	11, 72, 87
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	3 cut(s)	239, 369, 530
Eco24I	GRGCYC	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	196
EcoT14I	CCWWGG	3 cut(s)	239, 369, 530
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	3 cut(s)	239, 369, 530
FaeI	CATG	3 cut(s)	47, 373, 534
FatI	CATG	3 cut(s)	43, 369, 530
FauNDI	CATATG	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	3 cut(s)	142, 170, 386
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	2 cut(s)	240, 320
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	529
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	47, 373, 534
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	502
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	2 cut(s)	72, 267
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	1 cut(s)	456
HpyAV	CCTTC	3 cut(s)	3, 26, 139
HpyCH4III	ACNGT	2 cut(s)	413, 489
HpyCH4V	TGCA	4 cut(s)	170, 187, 424, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	4 cut(s)	84, 192, 364, 500
Hsp92II	CATG	3 cut(s)	47, 373, 534
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	5 cut(s)	24, 35, 262, 377, 463
LguI	GCTCTTC	1 cut(s)	11
LpnPI	CCDG	3 cut(s)	33, 173, 460
Lsp1109I	GCAGC	1 cut(s)	52
MaeI	CTAG	2 cut(s)	240, 320
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	5 cut(s)	26, 37, 264, 379, 465
MboI	GATC	5 cut(s)	24, 35, 262, 377, 463
MboII	GAAGA	5 cut(s)	28, 89, 104, 343, 473
MflI	RGATCY	2 cut(s)	262, 463
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	511
MnlI	CCTC	6 cut(s)	6, 22, 73, 88, 196, 486
MseI	TTAA	7 cut(s)	102, 153, 210, 312, 392, 468, 482
Mva1269I	GAATGC	1 cut(s)	142
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	193
NcoI	CCATGG	2 cut(s)	369, 530
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	5 cut(s)	24, 35, 262, 377, 463
NlaIII	CATG	3 cut(s)	47, 373, 534
NmuCI	GTSAC	1 cut(s)	407
NspI	RCATGY	1 cut(s)	47
PaeI	GCATGC	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	11
PctI	GAATGC	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	1 cut(s)	510
PpsI	GAGTC	1 cut(s)	510
Psp124BI	GAGCTC	1 cut(s)	198
PsuI	RGATCY	2 cut(s)	262, 463
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
SacI	GAGCTC	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	11
SaqAI	TTAA	7 cut(s)	102, 153, 210, 312, 392, 468, 482
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	5 cut(s)	24, 35, 262, 377, 463
SchI	GAGTC	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	5 cut(s)	23, 198, 241, 391, 501
SphI	GCATGC	1 cut(s)	47
Sse9I	AATT	1 cut(s)	65
SspMI	CTAG	2 cut(s)	240, 320
SstI	GAGCTC	1 cut(s)	198
StyI	CCWWGG	3 cut(s)	239, 369, 530
TaaI	ACNGT	2 cut(s)	413, 489
TaqI	TCGA	1 cut(s)	27
TasI	AATT	1 cut(s)	65
TatI	WGTACW	1 cut(s)	455
Tru1I	TTAA	7 cut(s)	102, 153, 210, 312, 392, 468, 482
Tru9I	TTAA	7 cut(s)	102, 153, 210, 312, 392, 468, 482
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	9 cut(s)	77, 158, 174, 228, 287, 349, 368, 399, 432
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	47
XmaJI	CCTAGG	1 cut(s)	239
XspI	CTAG	2 cut(s)	240, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.