Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007512

Physical Location & Seq

Genomic Coordinates Reverse (-)

10864518 .. 10867140

Gene Structure 2623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18920.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTGCTGATCCCTCGGAAACTCTCAACCAACATCTCGGCAGTGTTTCAGATGATCTCCAAAACCTCAACAAGAGCCGAGTCTCCGTTCAAAGCAAGTTGGACGAGAAGTTAAGGGAGCTGGTTGGGCCTCAAATAATCACCATTCGTCAGGATGTTGCTATTGCTAAGAGAGAAAAGGCTGAGCTTGAAGAGGCTGTCAGCGAACTAATAACAAGGGTTGAATGGATGAAGAATGTGATGATGCAGTTATCTCACTTAGTTGCATCTCGGCGCGTACGGGCTGGCTTGAAAGAGGATGTTAATGAACTAAGATCAACAACTGAACAACCTTGGGGAGCAGATGGTTTTGGCAAGGATCAGATAATGAAATATTTCAAGATTATACTTGAGTTACCACCTGCAATGCAGAGAGATCTGGATGAGATTGAAGAGGCTGCTAATGAACTAAATCAACAACCGAACTGCCTAGGGGAGATGCATTTGGCAGATAAGATAATGAAGGTTGGCATGAATATACTCGTGTTGGTACCTGCAGTTCAGAGAGATTTGGATAAGATTCAAGAGGTTGTTAAGAAACAAGAAACAAGAAATGAATGGATAGAGACTATGGTGAAGCAGCTTGAAGAACAGGTTGCATGCATAGAAGGTTGCCAGATACTTAAGCAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

25.53

Weight (kDa)

5.04

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18900 FvH4_5g18920 FvH4_5g18920 FvH4_5g18920 FvH4_5g30431
rosa_chinensis	RchiOBHm_Chr5g0049741 RchiOBHm_Chr7g0203281 RchiOBHm_Chr7g0203291 RchiOBHm_Chr7g0203311
rosa_laevigata	RLG00000003536 RLG00000003537 RLG00000017197
rosa_multiflora	Rmu_sc0003347.1_g000001 Rmu_sc0003582.1_g000005 Rmu_sc0008159.1_g000009
rosa_roxburghii	Rroxscaffold_1G00027270 Rroxscaffold_5G00335690
rosa_rugosa	Rorug03G0310100 Rorug07G0075500
rosa_samantha	Rh2CG308700 Rh7AG205100 Rh7BG204500 Rh7CG216200 Rh7CG216300
rosa_wichuraiana	Rw7G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	409
Acc36I	ACCTGC	2 cut(s)	409, 541
Acc65I	GGTACC	1 cut(s)	529
AccB1I	GGYRCC	1 cut(s)	529
AccII	CGCG	1 cut(s)	276
AclWI	GGATC	2 cut(s)	5, 366
AfaI	GTAC	2 cut(s)	279, 531
AflII	CTTAAG	1 cut(s)	662
AgsI	TTSAA	8 cut(s)	92, 191, 224, 292, 379, 431, 563, 626
AluBI	AGCT	3 cut(s)	121, 187, 622
AluI	AGCT	3 cut(s)	121, 187, 622
Alw26I	GTCTC	2 cut(s)	88, 599
AlwI	GGATC	2 cut(s)	5, 366
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	3 cut(s)	5, 437, 619
Asp700I	GAANNNNTTC	1 cut(s)	374
Asp718I	GGTACC	1 cut(s)	529
AspA2I	CCTAGG	1 cut(s)	469
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	133, 625
AvrII	CCTAGG	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	529
BauI	CACGAG	1 cut(s)	521
BbvI	GCAGC	2 cut(s)	424, 631
BccI	CCATC	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	88, 599
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	1 cut(s)	534
BfrI	CTTAAG	1 cut(s)	662
BfuAI	ACCTGC	2 cut(s)	409, 541
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	3 cut(s)	6, 438, 620
BlnI	CCTAGG	1 cut(s)	469
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	3 cut(s)	7, 439, 621
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	531
BmsI	GCATC	3 cut(s)	234, 275, 468
Bpu1102I	GCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	410
BsaJI	CCNNGG	3 cut(s)	15, 332, 469
Bse3DI	GCAATG	1 cut(s)	411
BseDI	CCNNGG	3 cut(s)	15, 332, 469
BseGI	GGATG	4 cut(s)	160, 234, 304, 427
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	424, 631
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	529
BsiWI	CGTACG	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	88, 599
BsnI	GGCC	1 cut(s)	130
Bsp143I	GATC	5 cut(s)	10, 55, 314, 358, 415
Bsp1720I	GCTNAGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	531
BspMAI	CTGCAG	1 cut(s)	538
BspMI	ACCTGC	2 cut(s)	409, 541
BspPI	GGATC	2 cut(s)	5, 366
BspT107I	GGYRCC	1 cut(s)	529
BspTI	CTTAAG	1 cut(s)	662
BsrDI	GCAATG	1 cut(s)	411
BssECI	CCNNGG	3 cut(s)	15, 332, 469
BssMI	GATC	5 cut(s)	10, 55, 314, 358, 415
BssSI	CACGAG	1 cut(s)	521
BssT1I	CCWWGG	2 cut(s)	332, 469
Bst2BI	CACGAG	1 cut(s)	521
Bst6I	CTCTTC	2 cut(s)	186, 426
BstAFI	CTTAAG	1 cut(s)	662
BstC8I	GCNNGC	2 cut(s)	286, 640
BstDEI	CTNAG	4 cut(s)	168, 183, 259, 311
BstF5I	GGATG	4 cut(s)	160, 234, 304, 427
BstFNI	CGCG	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	5 cut(s)	13, 58, 317, 361, 418
BstMAI	GTCTC	2 cut(s)	88, 599
BstMBI	GATC	5 cut(s)	10, 55, 314, 358, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	642
BstSFI	CTRYAG	1 cut(s)	534
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	424, 631
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	4 cut(s)	160, 234, 304, 427
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
BveI	ACCTGC	2 cut(s)	409, 541
Cac8I	GCNNGC	2 cut(s)	286, 640
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	278, 530
CviAII	CATG	2 cut(s)	511, 639
CviQI	GTAC	2 cut(s)	278, 530
DdeI	CTNAG	4 cut(s)	168, 183, 259, 311
DpnI	GATC	5 cut(s)	12, 57, 316, 360, 417
DpnII	GATC	5 cut(s)	10, 55, 314, 358, 415
Eam1104I	CTCTTC	2 cut(s)	186, 426
EarI	CTCTTC	2 cut(s)	186, 426
Eco130I	CCWWGG	2 cut(s)	332, 469
EcoT14I	CCWWGG	2 cut(s)	332, 469
EcoT22I	ATGCAT	2 cut(s)	483, 644
ErhI	CCWWGG	2 cut(s)	332, 469
FaeI	CATG	2 cut(s)	514, 642
FaiI	YATR	6 cut(s)	386, 512, 518, 611, 640, 644
FatI	CATG	2 cut(s)	510, 638
Fnu4HI	GCNGC	3 cut(s)	6, 438, 620
FokI	GGATG	4 cut(s)	167, 241, 311, 434
Fsp4HI	GCNGC	3 cut(s)	6, 438, 620
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	3 cut(s)	6, 438, 620
HaeIII	GGCC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	514, 642
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	81, 559
HphI	GGTGA	2 cut(s)	133, 625
Hpy188I	TCNGA	5 cut(s)	19, 52, 363, 543, 674
Hpy188III	TCNNGA	4 cut(s)	152, 379, 419, 563
HpyAV	CCTTC	2 cut(s)	496, 641
HpyCH4V	TGCA	8 cut(s)	247, 266, 404, 409, 481, 536, 638, 642
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	4 cut(s)	168, 183, 259, 311
Hsp92II	CATG	2 cut(s)	514, 642
HspAI	GCGC	1 cut(s)	274
KpnI	GGTACC	1 cut(s)	533
Kzo9I	GATC	5 cut(s)	10, 55, 314, 358, 415
LmnI	GCTCC	2 cut(s)	118, 338
LpnPI	CCDG	8 cut(s)	107, 137, 270, 404, 414, 546, 617, 668
Lsp1109I	GCAGC	2 cut(s)	424, 631
LweI	GCATC	3 cut(s)	234, 275, 468
MaeI	CTAG	1 cut(s)	470
MaeIII	GTNAC	1 cut(s)	393
MalI	GATC	5 cut(s)	12, 57, 316, 360, 417
MboI	GATC	5 cut(s)	10, 55, 314, 358, 415
MboII	GAAGA	4 cut(s)	203, 244, 443, 638
MflI	RGATCY	1 cut(s)	415
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	7 cut(s)	25, 77, 141, 187, 289, 427, 559
Mph1103I	ATGCAT	2 cut(s)	483, 644
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	4 cut(s)	113, 303, 573, 663
MspCI	CTTAAG	1 cut(s)	662
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	5 cut(s)	10, 55, 314, 358, 415
NlaIII	CATG	2 cut(s)	514, 642
NlaIV	GGNNCC	1 cut(s)	531
NmeAIII	GCCGAG	3 cut(s)	18, 104, 250
NsiI	ATGCAT	2 cut(s)	483, 644
NspI	RCATGY	1 cut(s)	642
PaeI	GCATGC	1 cut(s)	642
PaqCI	CACCTGC	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	559
Pfl23II	CGTACG	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	7, 439, 621
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PspLI	CGTACG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	1 cut(s)	128
PsrI	GAACNNNNNNTAC	2 cut(s)	522, 554
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	2 cut(s)	279, 531
RsaNI	GTAC	2 cut(s)	278, 530
SaqAI	TTAA	4 cut(s)	113, 303, 573, 663
SatI	GCNGC	3 cut(s)	6, 438, 620
Sau3AI	GATC	5 cut(s)	10, 55, 314, 358, 415
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	90
SfaNI	GCATC	3 cut(s)	234, 275, 468
SfcI	CTRYAG	1 cut(s)	534
SmlI	CTYRAG	2 cut(s)	389, 662
SmoI	CTYRAG	2 cut(s)	389, 662
SphI	GCATGC	1 cut(s)	642
SspI	AATATT	1 cut(s)	374
SspMI	CTAG	1 cut(s)	470
StyI	CCWWGG	2 cut(s)	332, 469
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	4 cut(s)	113, 303, 573, 663
Tru9I	TTAA	4 cut(s)	113, 303, 573, 663
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	3 cut(s)	5, 437, 619
TspDTI	ATGAA	7 cut(s)	245, 321, 383, 459, 515, 527, 609
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	1 cut(s)	49
Vha464I	CTTAAG	1 cut(s)	662
XceI	RCATGY	1 cut(s)	642
XmaJI	CCTAGG	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	470
Zsp2I	ATGCAT	2 cut(s)	483, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.