RchiOBHm_Chr7g0203291

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
20991388 .. 20992075
688 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18195

Sequence Viewer

Length: 303 bp
ATGAAGCAGTTTAAGGATGAAGTAGCTGCATCTGAGGTTGAGCTGTTGGTGATTGAGCATTTGGTGGTTTTTGGTATGTACTTGAAAAATGATTTTGAGGCTGAGCTCAAAGAGGCTGTTAGTGGACTAAAATCAACAACTGAACAACTTAGGGGGGATGGTTTTGGCAAGGATCTGATAACGAAGTTTTCCGCGATGCAGATTGAGTTACAAGCTGCAGTTCAGAGAAATCAGGATGAGCTTAAAGAGGTTGTTAAAAAAGTAGGAATGAGGAAGGAATGGGTGGAGAATACGTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.4

Weight (kDa)

5.23

Isoelectric Point (pI)

20.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 194
AciI CCGC 1 cut(s) 192
AclWI GGATC 1 cut(s) 180
AfaI GTAC 1 cut(s) 80
AgsI TTSAA 2 cut(s) 85, 298
AluBI AGCT 5 cut(s) 26, 43, 106, 215, 241
AluI AGCT 5 cut(s) 26, 43, 106, 215, 241
Alw21I GWGCWC 1 cut(s) 108
AlwI GGATC 1 cut(s) 180
ApeKI GCWGC 2 cut(s) 26, 215
AsuHPI GGTGA 1 cut(s) 61
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 13, 202
BccI CCATC 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 2 cut(s) 27, 216
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 2 cut(s) 28, 217
BmsI GCATC 2 cut(s) 38, 186
Bpu1102I GCTNAGC 1 cut(s) 102
BsaXI ACNNNNNCTCC 1 cut(s) 278
BseGI GGATG 3 cut(s) 22, 163, 241
BseMII CTCAG 2 cut(s) 24, 93
BseXI GCAGC 2 cut(s) 13, 202
Bsh1236I CGCG 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 172
Bsp1720I GCTNAGC 1 cut(s) 102
BspACI CCGC 1 cut(s) 192
BspCNI CTCAG 2 cut(s) 25, 94
BspFNI CGCG 1 cut(s) 194
BspMAI CTGCAG 1 cut(s) 220
BspPI GGATC 1 cut(s) 180
BssMI GATC 1 cut(s) 172
BstDEI CTNAG 3 cut(s) 33, 102, 149
BstF5I GGATG 3 cut(s) 22, 163, 241
BstFNI CGCG 1 cut(s) 194
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 216
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 13, 202
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BtgZI GCGATG 1 cut(s) 209
BtsCI GGATG 3 cut(s) 22, 163, 241
Csp6I GTAC 1 cut(s) 79
CviJI RGCY 7 cut(s) 26, 43, 101, 106, 116, 215, 241
CviKI_1 RGCY 7 cut(s) 26, 43, 101, 106, 116, 215, 241
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 3 cut(s) 33, 102, 149
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 108
FaiI YATR 1 cut(s) 77
Fnu4HI GCNGC 2 cut(s) 27, 216
FokI GGATG 3 cut(s) 29, 170, 248
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 27, 216
GluI GCNGC 2 cut(s) 27, 216
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 3 cut(s) 34, 177, 225
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 3 cut(s) 29, 199, 218
HpyF3I CTNAG 3 cut(s) 33, 102, 149
HpySE526I ACGT 1 cut(s) 293
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 1 cut(s) 218
Lsp1109I GCAGC 2 cut(s) 13, 202
LweI GCATC 2 cut(s) 38, 186
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 207
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 108
MnlI CCTC 5 cut(s) 28, 91, 106, 241, 264
MseI TTAA 3 cut(s) 12, 243, 255
MvnI CGCG 1 cut(s) 194
NdeII GATC 1 cut(s) 172
PkrI GCNGC 2 cut(s) 28, 217
Psp124BI GAGCTC 1 cut(s) 108
PstI CTGCAG 1 cut(s) 220
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 3 cut(s) 12, 243, 255
SatI GCNGC 2 cut(s) 27, 216
Sau3AI GATC 1 cut(s) 172
SduI GDGCHC 1 cut(s) 108
SetI ASST 8 cut(s) 28, 39, 45, 108, 217, 243, 252, 296
SfaNI GCATC 2 cut(s) 38, 186
SfcI CTRYAG 1 cut(s) 216
SgeI CNNG 5 cut(s) 94, 181, 205, 224, 245
SsiI CCGC 1 cut(s) 192
SstI GAGCTC 1 cut(s) 108
TaiI ACGT 1 cut(s) 296
TatI WGTACW 1 cut(s) 78
Tru1I TTAA 3 cut(s) 12, 243, 255
Tru9I TTAA 3 cut(s) 12, 243, 255
TseI GCWGC 2 cut(s) 26, 215
TspDTI ATGAA 2 cut(s) 17, 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.