Rmu_sc0003582.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003582.1
OG0007512
Physical Location & Seq
Reverse (-)
16142 .. 18828
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003582.1_g000005.1.cds

Sequence Viewer

Length: 576 bp
atggctgctgatcactccgaaaatctcagcaagctcatcgaaaatatttcagatgatctcgaaaacttcaacctaagccacttccatcaaagtaagttggtcaatgagttaaaggagctggttgggcctcaagtagttaccattcgtggggaaattgctgcagctcagagagaacaggctgaggttgaagaggctattaatagaataaaaacaagggttgaatggatggggaatgcgatgaagcagtttaaggatgaagtagctgcatctgagattgagcatttgctggtttttggaatgtacgtgagcaatgattttgaggctgaggtcaaagaggctgttagtggactaaaatcaacaactgaacaacttaggggggatggttttggcaaggatctgataacgaagttttccgcgttacaagctgcagatcaggttgatgttcttgaagtctttagtggacttgttaaggtttcggaggctcaacgtccaggtacccccccccccttctcctcgagcggacggtcaaactctaggtcaacgctcgaaggaagcttctcgattgttcccggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.92

Weight (kDa)

4.85

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 494
AccB1I GGYRCC 1 cut(s) 494
AccBSI CCGCTC 1 cut(s) 519
AccII CGCG 1 cut(s) 416
AciI CCGC 2 cut(s) 414, 519
AclWI GGATC 1 cut(s) 402
AfaI GTAC 2 cut(s) 302, 496
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 4 cut(s) 70, 188, 221, 449
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 6 cut(s) 34, 118, 164, 263, 425, 555
AluI AGCT 6 cut(s) 34, 118, 164, 263, 425, 555
AlwI GGATC 1 cut(s) 402
Ama87I CYCGRG 1 cut(s) 514
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 5 cut(s) 5, 158, 161, 263, 425
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
AseI ATTAAT 1 cut(s) 198
Asp718I GGTACC 1 cut(s) 494
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 570
AvaI CYCGRG 1 cut(s) 514
BanI GGYRCC 1 cut(s) 494
BbvCI CCTCAGC 2 cut(s) 180, 324
BbvI GCAGC 4 cut(s) 145, 173, 250, 412
BccI CCATC 3 cut(s) 93, 220, 374
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 1 cut(s) 492
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 1 cut(s) 570
BfaI CTAG 1 cut(s) 534
BfmI CTRYAG 2 cut(s) 159, 426
BisI GCNGC 5 cut(s) 6, 159, 162, 264, 426
BlsI GCNGC 5 cut(s) 7, 160, 163, 265, 427
Bme1390I CCNGG 2 cut(s) 492, 570
BmeT110I CYCGRG 1 cut(s) 514
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 496
BmrFI CCNGG 2 cut(s) 492, 570
BmsI GCATC 1 cut(s) 275
Bpu10I CCTNAGC 3 cut(s) 74, 180, 324
BpuEI CTTGAG 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 570
BsaAI YACGTR 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 316
BseBI CCWGG 1 cut(s) 492
BseGI GGATG 3 cut(s) 231, 259, 385
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 5 cut(s) 40, 171, 179, 261, 315
BseRI GAGGAG 1 cut(s) 502
BseXI GCAGC 4 cut(s) 145, 173, 250, 412
Bsh1236I CGCG 1 cut(s) 416
BshFI GGCC 1 cut(s) 127
BshNI GGYRCC 1 cut(s) 494
BsiHKCI CYCGRG 1 cut(s) 514
BsiSI CCGG 1 cut(s) 570
BslI CCNNNNNNNGG 1 cut(s) 147
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 1 cut(s) 127
BsoBI CYCGRG 1 cut(s) 514
Bsp143I GATC 4 cut(s) 10, 55, 394, 430
BspACI CCGC 2 cut(s) 414, 519
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 5 cut(s) 39, 172, 178, 262, 316
BspFNI CGCG 1 cut(s) 416
BspLI GGNNCC 1 cut(s) 496
BspMAI CTGCAG 2 cut(s) 163, 430
BspPI GGATC 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 494
BsrBI CCGCTC 1 cut(s) 519
BsrDI GCAATG 1 cut(s) 316
BssMI GATC 4 cut(s) 10, 55, 394, 430
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 525
Bst6I CTCTTC 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 7 cut(s) 26, 74, 165, 180, 270, 324, 371
BstF5I GGATG 3 cut(s) 231, 259, 385
BstFNI CGCG 1 cut(s) 416
BstKTI GATC 4 cut(s) 13, 58, 397, 433
BstMBI GATC 4 cut(s) 10, 55, 394, 430
BstMWI GCNNNNNNNGC 2 cut(s) 124, 422
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 2 cut(s) 490, 568
BstSFI CTRYAG 2 cut(s) 159, 426
BstUI CGCG 1 cut(s) 416
BstV1I GCAGC 4 cut(s) 145, 173, 250, 412
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 1 cut(s) 127
BtgZI GCGATG 1 cut(s) 251
BtsCI GGATG 3 cut(s) 231, 259, 385
Cac8I GCNNGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 301, 495
CviQI GTAC 2 cut(s) 301, 495
DdeI CTNAG 7 cut(s) 26, 74, 165, 180, 270, 324, 371
DpnI GATC 4 cut(s) 12, 57, 396, 432
DpnII GATC 4 cut(s) 10, 55, 394, 430
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 490
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 5 cut(s) 6, 159, 162, 264, 426
FokI GGATG 3 cut(s) 238, 266, 392
Fsp4HI GCNGC 5 cut(s) 6, 159, 162, 264, 426
FspBI CTAG 1 cut(s) 534
GluI GCNGC 5 cut(s) 6, 159, 162, 264, 426
HaeIII GGCC 1 cut(s) 127
HapII CCGG 1 cut(s) 570
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HindIII AAGCTT 1 cut(s) 553
HpaII CCGG 1 cut(s) 570
Hpy166II GTNNAC 3 cut(s) 347, 461, 540
Hpy188I TCNGA 6 cut(s) 19, 52, 168, 271, 399, 478
Hpy188III TCNNGA 3 cut(s) 59, 446, 559
Hpy8I GTNNAC 3 cut(s) 347, 461, 540
HpyAV CCTTC 2 cut(s) 517, 542
HpyCH4III ACNGT 1 cut(s) 525
HpyCH4IV ACGT 2 cut(s) 303, 487
HpyCH4V TGCA 3 cut(s) 161, 266, 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 422
HpyF3I CTNAG 7 cut(s) 26, 74, 165, 180, 270, 324, 371
HpySE526I ACGT 2 cut(s) 303, 487
KpnI GGTACC 1 cut(s) 498
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 4 cut(s) 10, 55, 394, 430
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 104, 161, 272, 419, 477, 504
Lsp1109I GCAGC 4 cut(s) 145, 173, 250, 412
LweI GCATC 1 cut(s) 275
MaeI CTAG 1 cut(s) 534
MaeII ACGT 2 cut(s) 303, 487
MaeIII GTNAC 2 cut(s) 136, 417
MalI GATC 4 cut(s) 12, 57, 396, 432
MbiI CCGCTC 1 cut(s) 519
MboI GATC 4 cut(s) 10, 55, 394, 430
MboII GAAGA 1 cut(s) 200
MflI RGATCY 1 cut(s) 394
MluCI AATT 1 cut(s) 153
MnlI CCTC 8 cut(s) 138, 175, 184, 313, 319, 328, 472, 523
MseI TTAA 4 cut(s) 110, 198, 249, 468
MspI CCGG 1 cut(s) 570
MspR9I CCNGG 2 cut(s) 492, 570
Mva1269I GAATGC 1 cut(s) 238
MvaI CCWGG 1 cut(s) 492
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 2 cut(s) 124, 422
NciI CCSGG 1 cut(s) 570
NdeII GATC 4 cut(s) 10, 55, 394, 430
NlaIV GGNNCC 1 cut(s) 496
PaeR7I CTCGAG 1 cut(s) 514
PctI GAATGC 1 cut(s) 238
PkrI GCNGC 5 cut(s) 7, 160, 163, 265, 427
Ppu21I YACGTR 1 cut(s) 304
PshBI ATTAAT 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 1 cut(s) 496
PspPI GGNCC 1 cut(s) 125
PspXI VCTCGAGB 1 cut(s) 514
PstI CTGCAG 2 cut(s) 163, 430
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 2 cut(s) 302, 496
RsaNI GTAC 2 cut(s) 301, 495
SaqAI TTAA 4 cut(s) 110, 198, 249, 468
SatI GCNGC 5 cut(s) 6, 159, 162, 264, 426
Sau3AI GATC 4 cut(s) 10, 55, 394, 430
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 492, 570
SfaNI GCATC 1 cut(s) 275
SfcI CTRYAG 2 cut(s) 159, 426
Sfr274I CTCGAG 1 cut(s) 514
SlaI CTCGAG 1 cut(s) 514
SmlI CTYRAG 2 cut(s) 129, 514
SmoI CTYRAG 2 cut(s) 129, 514
Sse9I AATT 1 cut(s) 153
SsiI CCGC 2 cut(s) 414, 519
SspI AATATT 1 cut(s) 46
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 2 cut(s) 490, 568
TaaI ACNGT 1 cut(s) 525
TaiI ACGT 2 cut(s) 306, 490
TaqI TCGA 5 cut(s) 39, 60, 515, 546, 560
TasI AATT 1 cut(s) 153
Tru1I TTAA 4 cut(s) 110, 198, 249, 468
Tru9I TTAA 4 cut(s) 110, 198, 249, 468
TseI GCWGC 5 cut(s) 5, 158, 161, 263, 425
TspDTI ATGAA 2 cut(s) 254, 270
VspI ATTAAT 1 cut(s) 198
XhoI CTCGAG 1 cut(s) 514
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.