RLG00000003537

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007512
Physical Location & Seq
Forward (+)
49780073 .. 49781294
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003537

Sequence Viewer

Length: 405 bp
ATGGAGAATGCGATGAAGGAGTTTAAGGATGAACTAGCTGCATATGAGGCTGAGCTCAAAGAGGCTGCTAATGAACTAAAATCAACGACTGAACAACCTAGGGAATATGATTTTGGCAAGGGTCTGAAAATGAAGTTGTTTGTGAAGAAGCTTGAGTTACAAGCTGCATCTCAGAGAAATCACGATGAGTATAAAGAGTTTGTTAAAGGACTAGAAGCAAGGAAGGAATGGATAAAGAATACGATGAAGTTCATCTCAGCAGCTAGTGAAGTATTATCACAGCATAACATGCTTCATTCAGTTACAACTTTAAATCAGTTCGATCAACTTCCTGACCAGCATTGCTCTCCTCTGCAGATCACCAGAGATACAATCGAAACTGCAGGAAAATGTTCTGTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.43

Weight (kDa)

5.83

Isoelectric Point (pI)

24.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 5 cut(s) 38, 55, 151, 164, 263
AluI AGCT 5 cut(s) 38, 55, 151, 164, 263
Alw21I GWGCWC 1 cut(s) 57
ApeKI GCWGC 4 cut(s) 38, 65, 164, 260
Asp700I GAANNNNTTC 1 cut(s) 391
AspA2I CCTAGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 352
AvrII CCTAGG 1 cut(s) 98
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 4 cut(s) 25, 52, 151, 272
BfaI CTAG 4 cut(s) 35, 99, 212, 264
BfmI CTRYAG 2 cut(s) 353, 381
BisI GCNGC 4 cut(s) 39, 66, 165, 261
BlnI CCTAGG 1 cut(s) 98
BlpI GCTNAGC 1 cut(s) 51
BlsI GCNGC 4 cut(s) 40, 67, 166, 262
BmsI GCATC 1 cut(s) 176
Bpu1102I GCTNAGC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 340
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 3 cut(s) 42, 185, 270
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 4 cut(s) 25, 52, 151, 272
BsiHKAI GWGCWC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 322, 357
Bsp1720I GCTNAGC 1 cut(s) 51
BspCNI CTCAG 3 cut(s) 43, 184, 269
BspMAI CTGCAG 2 cut(s) 357, 385
BsrDI GCAATG 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 2 cut(s) 322, 357
BssT1I CCWWGG 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 289
BstDEI CTNAG 3 cut(s) 51, 171, 256
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 2 cut(s) 325, 360
BstMBI GATC 2 cut(s) 322, 357
BstMWI GCNNNNNNNGC 2 cut(s) 47, 289
BstNSI RCATGY 1 cut(s) 292
BstSFI CTRYAG 2 cut(s) 353, 381
BstV1I GCAGC 4 cut(s) 25, 52, 151, 272
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 1 cut(s) 34
CviAII CATG 1 cut(s) 289
CviJI RGCY 7 cut(s) 38, 50, 55, 65, 151, 164, 263
CviKI_1 RGCY 7 cut(s) 38, 50, 55, 65, 151, 164, 263
DdeI CTNAG 3 cut(s) 51, 171, 256
DpnI GATC 2 cut(s) 324, 359
DpnII GATC 2 cut(s) 322, 357
DraI TTTAAA 1 cut(s) 312
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 1 cut(s) 292
FaiI YATR 7 cut(s) 43, 45, 108, 192, 285, 290, 401
FatI CATG 1 cut(s) 288
FauNDI CATATG 1 cut(s) 43
Fnu4HI GCNGC 4 cut(s) 39, 66, 165, 261
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 4 cut(s) 39, 66, 165, 261
FspBI CTAG 4 cut(s) 35, 99, 212, 264
GluI GCNGC 4 cut(s) 39, 66, 165, 261
Hin1II CATG 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 149
HphI GGTGA 1 cut(s) 352
Hpy188I TCNGA 2 cut(s) 126, 174
Hpy188III TCNNGA 2 cut(s) 182, 332
HpyAV CCTTC 2 cut(s) 10, 217
HpyCH4V TGCA 4 cut(s) 41, 167, 355, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 289
HpyF3I CTNAG 3 cut(s) 51, 171, 256
Hsp92II CATG 1 cut(s) 292
Kzo9I GATC 2 cut(s) 322, 357
LpnPI CCDG 4 cut(s) 345, 350, 369, 376
Lsp1109I GCAGC 4 cut(s) 25, 52, 151, 272
LweI GCATC 1 cut(s) 176
MaeI CTAG 4 cut(s) 35, 99, 212, 264
MaeIII GTNAC 2 cut(s) 156, 301
MalI GATC 2 cut(s) 324, 359
MboI GATC 2 cut(s) 322, 357
MboII GAAGA 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 57
MnlI CCTC 3 cut(s) 40, 55, 360
MroXI GAANNNNTTC 1 cut(s) 391
MseI TTAA 3 cut(s) 24, 204, 311
Mva1269I GAATGC 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 47, 289
NdeI CATATG 1 cut(s) 43
NdeII GATC 2 cut(s) 322, 357
NlaIII CATG 1 cut(s) 292
NspI RCATGY 1 cut(s) 292
PctI GAATGC 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 391
PkrI GCNGC 4 cut(s) 40, 67, 166, 262
Psp124BI GAGCTC 1 cut(s) 57
PstI CTGCAG 2 cut(s) 357, 385
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 3 cut(s) 24, 204, 311
SatI GCNGC 4 cut(s) 39, 66, 165, 261
Sau3AI GATC 2 cut(s) 322, 357
SduI GDGCHC 1 cut(s) 57
SetI ASST 6 cut(s) 40, 57, 100, 153, 166, 265
SfaNI GCATC 1 cut(s) 176
SfcI CTRYAG 2 cut(s) 353, 381
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SspMI CTAG 4 cut(s) 35, 99, 212, 264
SstI GAGCTC 1 cut(s) 57
StyI CCWWGG 1 cut(s) 98
TaqI TCGA 2 cut(s) 321, 375
Tru1I TTAA 3 cut(s) 24, 204, 311
Tru9I TTAA 3 cut(s) 24, 204, 311
TseI GCWGC 4 cut(s) 38, 65, 164, 260
TspDTI ATGAA 7 cut(s) 29, 45, 87, 146, 241, 260, 284
XceI RCATGY 1 cut(s) 292
XmaJI CCTAGG 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 391
XspI CTAG 4 cut(s) 35, 99, 212, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.