Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007512

Physical Location & Seq

Genomic Coordinates Reverse (-)

18732458 .. 18734417

Gene Structure 1960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG205100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTGCTGATCACTCCGAAAATCTCAGCAAGCTCATCGAAAATATTTCACATGATCTCGAAAACTTCAACTTAGGCCACTTCCGTCAAAGTGAGTTGGTCAAGCAGTTAAAGGAGCTGGTTGGGCCTCAAGTAATTACCATTCGTGGGGAAATTGCTGCAGCTCAGAGAGAACAGGCTGAGGTTGAAGAGGCTATTAATAGAATAAAAACAAGGGTTGAATGGATGGGGAATGCGATGAAGCAGTTTAAGGATGAAGTAGCTGCATCTGAGATTGAGCATTTGCTGGTTTTTGGAATGTACGTGAGCAATGATTTTGAGGCTGAGGTCAAAGAGGCTGTTAGTGGACTAAAATCAACAACTGAACAACTTAGGGGGGATGGTTTTGGCAAGGATCTGATAACGAAGTTTTCCGCGTTACAAGCTGCAGATCAGAGAAATCAGGATGAGCTTAAAGAGGTTGTTAAAAAAGTAGGAATCTGGAAGGAATGGGTGGAGAATACTTTGAAGCAGGTTGAGGAACTTGAAACAAGGGCTGAATGGGTGCAGAATGCGTGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.27

Weight (kDa)

4.94

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18900 FvH4_5g18920 FvH4_5g18920 FvH4_5g18920 FvH4_5g30431
rosa_chinensis	RchiOBHm_Chr5g0049741 RchiOBHm_Chr7g0203281 RchiOBHm_Chr7g0203291 RchiOBHm_Chr7g0203311
rosa_laevigata	RLG00000003536 RLG00000003537 RLG00000017197
rosa_multiflora	Rmu_sc0003347.1_g000001 Rmu_sc0003582.1_g000005 Rmu_sc0008159.1_g000009
rosa_roxburghii	Rroxscaffold_1G00027270 Rroxscaffold_5G00335690
rosa_rugosa	Rorug03G0310100 Rorug07G0075500
rosa_samantha	Rh2CG308700 Rh7AG205100 Rh7BG204500 Rh7CG216200 Rh7CG216300
rosa_wichuraiana	Rw7G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	502
AccII	CGCG	1 cut(s)	416
AciI	CCGC	1 cut(s)	414
AclWI	GGATC	1 cut(s)	402
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	147
AgsI	TTSAA	5 cut(s)	70, 188, 221, 508, 527
AluBI	AGCT	6 cut(s)	34, 118, 164, 263, 425, 451
AluI	AGCT	6 cut(s)	34, 118, 164, 263, 425, 451
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	2 cut(s)	76, 125
ApeKI	GCWGC	5 cut(s)	5, 158, 161, 263, 425
AseI	ATTAAT	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	125
BbvCI	CCTCAGC	2 cut(s)	180, 324
BbvI	GCAGC	4 cut(s)	145, 173, 250, 412
BccI	CCATC	2 cut(s)	220, 374
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BclI	TGATCA	1 cut(s)	10
BfmI	CTRYAG	2 cut(s)	159, 426
BfuAI	ACCTGC	1 cut(s)	502
BisI	GCNGC	5 cut(s)	6, 159, 162, 264, 426
BlsI	GCNGC	5 cut(s)	7, 160, 163, 265, 427
BmgT120I	GGNCC	1 cut(s)	125
BmsI	GCATC	1 cut(s)	275
Bpu10I	CCTNAGC	2 cut(s)	180, 324
BpuEI	CTTGAG	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	316
BseGI	GGATG	4 cut(s)	231, 259, 385, 451
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	5 cut(s)	40, 171, 179, 261, 315
BseXI	GCAGC	4 cut(s)	145, 173, 250, 412
Bsh1236I	CGCG	1 cut(s)	416
BshFI	GGCC	2 cut(s)	78, 127
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmI	GAATGC	2 cut(s)	238, 556
BsnI	GGCC	2 cut(s)	78, 127
Bsp143I	GATC	4 cut(s)	10, 55, 394, 430
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	2 cut(s)	78, 127
BspCNI	CTCAG	5 cut(s)	39, 172, 178, 262, 316
BspFNI	CGCG	1 cut(s)	416
BspMAI	CTGCAG	2 cut(s)	163, 430
BspMI	ACCTGC	1 cut(s)	502
BspPI	GGATC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	316
BssMI	GATC	4 cut(s)	10, 55, 394, 430
Bst6I	CTCTTC	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	304
BstC8I	GCNNGC	2 cut(s)	32, 556
BstDEI	CTNAG	7 cut(s)	26, 73, 165, 180, 270, 324, 371
BstF5I	GGATG	4 cut(s)	231, 259, 385, 451
BstFNI	CGCG	1 cut(s)	416
BstKTI	GATC	4 cut(s)	13, 58, 397, 433
BstMBI	GATC	4 cut(s)	10, 55, 394, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 422
BstSFI	CTRYAG	2 cut(s)	159, 426
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	4 cut(s)	145, 173, 250, 412
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	78, 127
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	4 cut(s)	231, 259, 385, 451
BveI	ACCTGC	1 cut(s)	502
Cac8I	GCNNGC	2 cut(s)	32, 556
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	1 cut(s)	53
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	7 cut(s)	26, 73, 165, 180, 270, 324, 371
DpnI	GATC	4 cut(s)	12, 57, 396, 432
DpnII	GATC	4 cut(s)	10, 55, 394, 430
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
FaeI	CATG	1 cut(s)	56
FaiI	YATR	1 cut(s)	54
FatI	CATG	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	5 cut(s)	6, 159, 162, 264, 426
FokI	GGATG	4 cut(s)	238, 266, 392, 458
Fsp4HI	GCNGC	5 cut(s)	6, 159, 162, 264, 426
GluI	GCNGC	5 cut(s)	6, 159, 162, 264, 426
HaeIII	GGCC	2 cut(s)	78, 127
Hin1II	CATG	1 cut(s)	56
HinfI	GANTC	1 cut(s)	477
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	6 cut(s)	19, 168, 271, 399, 435, 563
Hpy188III	TCNNGA	3 cut(s)	59, 443, 481
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	478
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	5 cut(s)	161, 266, 428, 547, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 422
HpyF3I	CTNAG	7 cut(s)	26, 73, 165, 180, 270, 324, 371
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	10, 55, 394, 430
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	6 cut(s)	104, 161, 272, 428, 466, 497
Lsp1109I	GCAGC	4 cut(s)	145, 173, 250, 412
LweI	GCATC	1 cut(s)	275
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	417
MalI	GATC	4 cut(s)	12, 57, 396, 432
MboI	GATC	4 cut(s)	10, 55, 394, 430
MboII	GAAGA	1 cut(s)	200
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	2 cut(s)	135, 153
MnlI	CCTC	8 cut(s)	138, 175, 184, 313, 319, 328, 451, 511
MseI	TTAA	5 cut(s)	110, 198, 249, 453, 465
Mva1269I	GAATGC	2 cut(s)	238, 556
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	124, 422
NdeII	GATC	4 cut(s)	10, 55, 394, 430
NlaIII	CATG	1 cut(s)	56
PctI	GAATGC	2 cut(s)	238, 556
PfeI	GAWTC	1 cut(s)	477
PkrI	GCNGC	5 cut(s)	7, 160, 163, 265, 427
Ppu21I	YACGTR	1 cut(s)	304
PshBI	ATTAAT	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	2 cut(s)	163, 430
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SaqAI	TTAA	5 cut(s)	110, 198, 249, 453, 465
SatI	GCNGC	5 cut(s)	6, 159, 162, 264, 426
Sau3AI	GATC	4 cut(s)	10, 55, 394, 430
Sau96I	GGNCC	1 cut(s)	125
SfaNI	GCATC	1 cut(s)	275
SfcI	CTRYAG	2 cut(s)	159, 426
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	2 cut(s)	135, 153
SsiI	CCGC	1 cut(s)	414
SspI	AATATT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	2 cut(s)	39, 60
TasI	AATT	2 cut(s)	135, 153
TfiI	GAWTC	1 cut(s)	477
Tru1I	TTAA	5 cut(s)	110, 198, 249, 453, 465
Tru9I	TTAA	5 cut(s)	110, 198, 249, 453, 465
TseI	GCWGC	5 cut(s)	5, 158, 161, 263, 425
TspDTI	ATGAA	2 cut(s)	254, 270
TspGWI	ACGGA	1 cut(s)	74
VspI	ATTAAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.