Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007512

Physical Location & Seq

Genomic Coordinates Forward (+)

34452683 .. 34464434

Gene Structure 11752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGACGGCTACTTCTCTTTGTACCCCGACAAGCTCAAAGAGGTCGACATCGAGTCCGCCGAGGTCTTATCCCATTTTTATTAGTAGCCACAATTTGGATAGGGTTCGTAAATTAAAAAGTGCAATGACAAGGTTGACTGCACGAGTCCAAAAGGGGCACCCCAGATTTGTGCTTCATGACCACCGAAGCTTGCGGTCTAAGTTAGTTGCCTTAGAAATGCAAGCTCCTTGGTGTTCAATGAAATTTCGGAGAAATCGGGATGAGCTTAAAGAGGTTGTTAAAAAAGTAGGAATAAGGAAGGAATGGGTGGAGAATACATTGAAGCAGATTGAGGAACTGGAAACAAGGGCTAAATGGGTGGAGAATGTGTGCATCCGAGGTAATACGCGCACGGGACCTGTCACTTGCGTCTCAATCACAAGTAAGGATAAGATAGCAGCCATAGGAAAATATCCCCATCTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.78

Weight (kDa)

10.47

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18900 FvH4_5g18920 FvH4_5g18920 FvH4_5g18920 FvH4_5g30431
rosa_chinensis	RchiOBHm_Chr5g0049741 RchiOBHm_Chr7g0203281 RchiOBHm_Chr7g0203291 RchiOBHm_Chr7g0203311
rosa_laevigata	RLG00000003536 RLG00000003537 RLG00000017197
rosa_multiflora	Rmu_sc0003347.1_g000001 Rmu_sc0003582.1_g000005 Rmu_sc0008159.1_g000009
rosa_roxburghii	Rroxscaffold_1G00027270 Rroxscaffold_5G00335690
rosa_rugosa	Rorug03G0310100 Rorug07G0075500
rosa_samantha	Rh2CG308700 Rh7AG205100 Rh7BG204500 Rh7CG216200 Rh7CG216300
rosa_wichuraiana	Rw7G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	156
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	1 cut(s)	388
AciI	CCGC	2 cut(s)	56, 193
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	237, 322
AhdI	GACNNNNNGTC	1 cut(s)	51
AluBI	AGCT	4 cut(s)	33, 189, 224, 265
AluI	AGCT	4 cut(s)	33, 189, 224, 265
Alw26I	GTCTC	1 cut(s)	415
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	156
BauI	CACGAG	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	449
BccI	CCATC	1 cut(s)	465
BceAI	ACGGC	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	415
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme18I	GGWCC	1 cut(s)	395
BmeRI	GACNNNNNGTC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	2 cut(s)	158, 396
BmsI	GCATC	1 cut(s)	381
BsaJI	CCNNGG	3 cut(s)	59, 227, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	129
BseDI	CCNNGG	3 cut(s)	59, 227, 376
BseGI	GGATG	2 cut(s)	265, 372
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	342
BseSI	GKGCMC	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	449
BsgI	GTGCAG	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	388
BshNI	GGYRCC	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	415
BsmBI	CGTCTC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	159
BspACI	CCGC	2 cut(s)	56, 193
BspFNI	CGCG	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	158, 396
BspT107I	GGYRCC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	342
BssECI	CCNNGG	3 cut(s)	59, 227, 376
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	191, 222
BstDEI	CTNAG	2 cut(s)	198, 211
BstF5I	GGATG	2 cut(s)	265, 372
BstFNI	CGCG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	390
BstMAI	GTCTC	1 cut(s)	415
BstSLI	GKGCMC	1 cut(s)	159
BstUI	CGCG	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	449
BtsCI	GGATG	2 cut(s)	265, 372
Cac8I	GCNNGC	2 cut(s)	191, 222
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	395
CseI	GACGC	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	8 cut(s)	8, 33, 87, 189, 224, 265, 350, 440
CviKI_1	RGCY	8 cut(s)	8, 33, 87, 189, 224, 265, 350, 440
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	2 cut(s)	198, 211
DriI	GACNNNNNGTC	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	1 cut(s)	179
FaiI	YATR	4 cut(s)	177, 443, 464, 466
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	2 cut(s)	272, 359
Fsp4HI	GCNGC	1 cut(s)	438
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	1 cut(s)	438
HgaI	GACGC	1 cut(s)	397
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	2 cut(s)	45, 135
HindII	GTYRAC	2 cut(s)	45, 135
HindIII	AAGCTT	1 cut(s)	187
HinfI	GANTC	2 cut(s)	52, 144
Hpy166II	GTNNAC	2 cut(s)	45, 135
Hpy188I	TCNGA	2 cut(s)	249, 377
Hpy188III	TCNNGA	2 cut(s)	176, 257
Hpy8I	GTNNAC	2 cut(s)	45, 135
HpyAV	CCTTC	1 cut(s)	292
HpyCH4V	TGCA	4 cut(s)	122, 140, 220, 372
HpyF3I	CTNAG	2 cut(s)	198, 211
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	388
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	3 cut(s)	175, 323, 411
Lsp1109I	GCAGC	1 cut(s)	449
LweI	GCATC	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	91, 110, 242
MlyI	GAGTC	2 cut(s)	61, 153
MnlI	CCTC	5 cut(s)	33, 54, 265, 325, 371
MseI	TTAA	3 cut(s)	113, 267, 279
MvnI	CGCG	1 cut(s)	388
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	2 cut(s)	158, 396
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	400
PagI	TCATGA	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	439
PleI	GAGTC	2 cut(s)	60, 152
PpsI	GAGTC	2 cut(s)	60, 152
PpuMI	RGGWCCY	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	395
PspN4I	GGNNCC	2 cut(s)	158, 396
PspPI	GGNCC	1 cut(s)	395
PspPPI	RGGWCCY	1 cut(s)	395
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	113, 267, 279
SatI	GCNGC	1 cut(s)	438
Sau96I	GGNCC	1 cut(s)	395
SchI	GAGTC	2 cut(s)	61, 153
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	1 cut(s)	381
SinI	GGWCC	1 cut(s)	395
Sse9I	AATT	3 cut(s)	91, 110, 242
SsiI	CCGC	2 cut(s)	56, 193
StyI	CCWWGG	1 cut(s)	227
TaqI	TCGA	2 cut(s)	44, 50
TasI	AATT	3 cut(s)	91, 110, 242
Tru1I	TTAA	3 cut(s)	113, 267, 279
Tru9I	TTAA	3 cut(s)	113, 267, 279
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	164, 254
Van91I	CCANNNNNTGG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.