RchiOBHm_Chr7g0203281

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
20986320 .. 20989011
2692 bp
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UTR
Exon/CDS
Intron
PRQ18194

Sequence Viewer

Length: 357 bp
ATGGAGAATGCGATGAAGGAGTTTAAGGATGAACTAGCTGCATATGAGAGAGAAGTGCAGGCTGAGCTCAAAGAGGCTGTTAATGAACTAAAATCAACAACTGAACAACCTAGGGAATATGATTTTGGCAAGGATCTGAAAATGAAGTTGTTTGTGAAGAAGCTTGAGTTACAAGCTGAATCTCAGAGAAATCAGGATGAGTATAAAGAGTTTGTTAAAGGACTAGAAGCAAGGAAGGAATGGATAAAGAATACGATGAAGTTCATCTCAGATCACCAGAGATACAATCGAAACTGCAGGAAAATGTTCTGTTATGTGAGTCTCGGACTGCTTTCCTTTGTCCTTTTTTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

14.3

Weight (kDa)

7.69

Isoelectric Point (pI)

21.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 141
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 4 cut(s) 38, 67, 163, 176
AluI AGCT 4 cut(s) 38, 67, 163, 176
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 326
AlwI GGATC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 305
AspA2I CCTAGG 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 266
AvrII CCTAGG 1 cut(s) 110
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 3 cut(s) 35, 111, 224
BfmI CTRYAG 1 cut(s) 295
BisI GCNGC 1 cut(s) 39
BlnI CCTAGG 1 cut(s) 110
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 40
Bpu1102I GCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 110
BseGI GGATG 2 cut(s) 34, 202
BseMII CTCAG 3 cut(s) 54, 197, 282
BseXI GCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 326
BsmI GAATGC 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 133, 271
Bsp1720I GCTNAGC 1 cut(s) 63
BspCNI CTCAG 3 cut(s) 55, 196, 281
BspMAI CTGCAG 1 cut(s) 299
BspPI GGATC 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 2 cut(s) 133, 271
BssT1I CCWWGG 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 3 cut(s) 63, 183, 268
BstF5I GGATG 2 cut(s) 34, 202
BstKTI GATC 2 cut(s) 136, 274
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 2 cut(s) 133, 271
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 2 cut(s) 34, 202
Cac8I GCNNGC 1 cut(s) 60
CviJI RGCY 6 cut(s) 38, 62, 67, 77, 163, 176
CviKI_1 RGCY 6 cut(s) 38, 62, 67, 77, 163, 176
DdeI CTNAG 3 cut(s) 63, 183, 268
DpnI GATC 2 cut(s) 135, 273
DpnII GATC 2 cut(s) 133, 271
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 110
FaiI YATR 5 cut(s) 43, 45, 120, 204, 315
FauNDI CATATG 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 2 cut(s) 41, 209
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 3 cut(s) 35, 111, 224
GluI GCNGC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 2 cut(s) 179, 319
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 4 cut(s) 138, 186, 271, 326
Hpy188III TCNNGA 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 10, 229
HpyCH4V TGCA 3 cut(s) 41, 58, 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 3 cut(s) 63, 183, 268
Kzo9I GATC 2 cut(s) 133, 271
LpnPI CCDG 4 cut(s) 44, 179, 283, 290
Lsp1109I GCAGC 1 cut(s) 25
MaeI CTAG 3 cut(s) 35, 111, 224
MaeIII GTNAC 1 cut(s) 168
MalI GATC 2 cut(s) 135, 273
MboI GATC 2 cut(s) 133, 271
MboII GAAGA 1 cut(s) 169
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 69
MlyI GAGTC 1 cut(s) 328
MnlI CCTC 1 cut(s) 67
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 3 cut(s) 24, 81, 216
Mva1269I GAATGC 1 cut(s) 13
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeI CATATG 1 cut(s) 43
NdeII GATC 2 cut(s) 133, 271
PctI GAATGC 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 69
PstI CTGCAG 1 cut(s) 299
PsuI RGATCY 1 cut(s) 133
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 3 cut(s) 24, 81, 216
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 2 cut(s) 133, 271
SchI GAGTC 1 cut(s) 328
SduI GDGCHC 1 cut(s) 69
SetI ASST 5 cut(s) 40, 69, 112, 165, 178
SfcI CTRYAG 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SspMI CTAG 3 cut(s) 35, 111, 224
SstI GAGCTC 1 cut(s) 69
StyI CCWWGG 1 cut(s) 110
TaqI TCGA 1 cut(s) 289
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 3 cut(s) 24, 81, 216
Tru9I TTAA 3 cut(s) 24, 81, 216
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 6 cut(s) 29, 45, 99, 158, 253, 272
XmaJI CCTAGG 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 3 cut(s) 35, 111, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.