Rh2CG308700

Replication Fork Protection Component Swi3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0007512
Physical Location & Seq
Forward (+)
38647437 .. 38710960
63524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG308700.1

Sequence Viewer

Length: 390 bp
ATGTGCACCGAGGTATATATCAAACCGAGAAGGTTGCCGATTCCAGACCTTCATCGGTGCAGATTGGGTATTGGTACTGTACTGAACTCAACAAAGTTGCAGTATGGCCTTCCGGTTAAGGATTTGGGGAACCTAATTGGGTTGTACGGAGAGTGGCACTCTCAGTTGCTGCCCTATTACTCATTTGATCAATTTGTGCATGAAGTGGAACAAGTGGCGGCCACAAAAAGAGTCAAGGTCAATCTTTTGGCGGATAAGGTGGACACTCAACTGAATCTTGTTGAAAAATTATACATTGCCCTTGATCATTATTCACCAACATTGCAGCATTATCCTGGATCTTGCTGGGGAGCTGCAAGAAACAAACAAGAAGATCATGAAGGGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008156 GO:0008284 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0019219 GO:0019222 GO:0022402 GO:0031298 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031570 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033262 GO:0033554 GO:0034641 GO:0034645 GO:0042127 GO:0043111 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044773 GO:0044774 GO:0045005 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048478 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1903047 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Swi3 zf-CCHC

Protein Analysis

129

Amino Acids

14.75

Weight (kDa)

7.0

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Swi3 PF07962 37 - 81 1.7e-10 Replication Fork Protection Component Swi3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 218, 251
AclWI GGATC 1 cut(s) 346
AcoI YGGCCR 1 cut(s) 219
AfaI GTAC 3 cut(s) 76, 81, 146
AgsI TTSAA 1 cut(s) 284
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
Alw21I GWGCWC 1 cut(s) 8
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 1 cut(s) 346
AlwNI CAGNNNCTG 1 cut(s) 169
AoxI GGCC 2 cut(s) 106, 219
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 3 cut(s) 169, 325, 353
AspS9I GGNCC 1 cut(s) 384
AsuHPI GGTGA 1 cut(s) 306
AvaII GGWCC 1 cut(s) 384
BaeGI GKGCMC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 156, 337, 340
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 2 cut(s) 187, 304
BisI GCNGC 4 cut(s) 170, 219, 326, 354
BlsI GCNGC 4 cut(s) 171, 220, 327, 355
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 2 cut(s) 131, 385
BmrFI CCNGG 1 cut(s) 336
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BsaJI CCNNGG 1 cut(s) 9
BsaWI WCCGGW 1 cut(s) 112
Bse3DI GCAATG 2 cut(s) 294, 320
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 9
BseMI GCAATG 2 cut(s) 294, 320
BseMII CTCAG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 3 cut(s) 156, 337, 340
BseYI CCCAGC 1 cut(s) 345
BsgI GTGCAG 1 cut(s) 79
BshFI GGCC 2 cut(s) 108, 221
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 113
BsnI GGCC 2 cut(s) 108, 221
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 187, 304, 338, 373
BspACI CCGC 2 cut(s) 218, 251
BspANI GGCC 2 cut(s) 108, 221
BspCNI CTCAG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 131, 385
BspPI GGATC 1 cut(s) 346
BsrDI GCAATG 2 cut(s) 294, 320
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 4 cut(s) 187, 304, 338, 373
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 162
BstKTI GATC 4 cut(s) 190, 307, 341, 376
BstMBI GATC 4 cut(s) 187, 304, 338, 373
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 334
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 3 cut(s) 156, 337, 340
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BsuRI GGCC 2 cut(s) 108, 221
CaiI CAGNNNCTG 1 cut(s) 169
CciI TCATGA 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 384
Csp6I GTAC 3 cut(s) 75, 80, 145
CviAII CATG 2 cut(s) 200, 377
CviJI RGCY 3 cut(s) 108, 221, 353
CviKI_1 RGCY 3 cut(s) 108, 221, 353
CviQI GTAC 3 cut(s) 75, 80, 145
DdeI CTNAG 1 cut(s) 162
DpnI GATC 4 cut(s) 189, 306, 340, 375
DpnII GATC 4 cut(s) 187, 304, 338, 373
EaeI YGGCCR 1 cut(s) 219
EciI GGCGGA 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 384
EcoO109I RGGNCCY 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 2 cut(s) 203, 380
FaiI YATR 6 cut(s) 16, 18, 105, 201, 292, 378
FatI CATG 2 cut(s) 199, 376
FbaI TGATCA 2 cut(s) 187, 304
Fnu4HI GCNGC 4 cut(s) 170, 219, 326, 354
Fsp4HI GCNGC 4 cut(s) 170, 219, 326, 354
GluI GCNGC 4 cut(s) 170, 219, 326, 354
GsaI CCCAGC 1 cut(s) 349
HaeIII GGCC 2 cut(s) 108, 221
HapII CCGG 1 cut(s) 113
Hin1II CATG 2 cut(s) 203, 380
HinfI GANTC 3 cut(s) 40, 231, 274
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 306
Hpy166II GTNNAC 2 cut(s) 6, 262
Hpy188III TCNNGA 2 cut(s) 44, 377
Hpy8I GTNNAC 2 cut(s) 6, 262
HpyAV CCTTC 4 cut(s) 24, 59, 119, 374
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 6 cut(s) 6, 60, 100, 199, 325, 356
HpyF3I CTNAG 1 cut(s) 162
Hsp92II CATG 2 cut(s) 203, 380
Ksp22I TGATCA 2 cut(s) 187, 304
Kzo9I GATC 4 cut(s) 187, 304, 338, 373
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 5 cut(s) 57, 126, 321, 331, 348
Lsp1109I GCAGC 3 cut(s) 156, 337, 340
MalI GATC 4 cut(s) 189, 306, 340, 375
MboI GATC 4 cut(s) 187, 304, 338, 373
MboII GAAGA 1 cut(s) 383
MflI RGATCY 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 135, 191, 287
MlyI GAGTC 1 cut(s) 240
MnlI CCTC 1 cut(s) 4
MseI TTAA 1 cut(s) 117
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
NdeII GATC 4 cut(s) 187, 304, 338, 373
NlaIII CATG 2 cut(s) 203, 380
NlaIV GGNNCC 2 cut(s) 131, 385
PagI TCATGA 1 cut(s) 376
PfeI GAWTC 2 cut(s) 40, 274
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 4 cut(s) 171, 220, 327, 355
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 384
Psp6I CCWGG 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 345
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 131, 385
PspPI GGNCC 1 cut(s) 384
PspPPI RGGWCCY 1 cut(s) 384
PstNI CAGNNNCTG 1 cut(s) 169
PsuI RGATCY 1 cut(s) 338
RsaI GTAC 3 cut(s) 76, 81, 146
RsaNI GTAC 3 cut(s) 75, 80, 145
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 4 cut(s) 170, 219, 326, 354
Sau3AI GATC 4 cut(s) 187, 304, 338, 373
Sau96I GGNCC 1 cut(s) 384
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 1 cut(s) 8
SetI ASST 8 cut(s) 15, 35, 51, 135, 240, 261, 355, 389
SinI GGWCC 1 cut(s) 384
Sse9I AATT 3 cut(s) 135, 191, 287
SsiI CCGC 2 cut(s) 218, 251
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 79
TasI AATT 3 cut(s) 135, 191, 287
TatI WGTACW 1 cut(s) 79
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 2 cut(s) 40, 274
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseI GCWGC 3 cut(s) 169, 325, 353
TspDTI ATGAA 2 cut(s) 41, 216
TspGWI ACGGA 1 cut(s) 162
VneI GTGCAC 1 cut(s) 4
VpaK11BI GGWCC 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.