Rh7CG216200

Replication Fork Protection Component Swi3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007512
Physical Location & Seq
Reverse (-)
19633891 .. 19670498
36608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG216200.1

Sequence Viewer

Length: 741 bp
ATGTTCACACTTAACCCGCCAGTAGATGATGTTAATTACATTTTAACACAATGGGTGTTTGTTATGGATTTTAGTACATCGGTCAAGCAGTTGGCGGAGCTGCTTCGTGAGGAAATTGTTGCAACTGAGAGAGAAGAGGCTGAGCGCGAAGAGGCTCTTAATAAAATACAAGCAAGGGCTGAATGGATGGAGAATGCGATGGAGTTTAAGAATGAACTAGCTGCATATGAGAGAGAAGTGCAGGCTGAGATCAAAGAGGCTGTTAATGAACTAAAATCAACAACTGAACAACCTAGGGAATATGATTTTGGCAAGGATATTCTGAAAATGAAGTTGTTTGTGAAGAAGCTTGAGTTACAAGCTGCATCTCAGAGAAATCACGATGAGTATAAAGAGTTTGTTAAAGGACTAGAAGCAAGGAAGGAATGGATAAAGAATACGATGAAGTTCATCTCAGTTGAAGATTCAAAGCTAGTTGGTTCAAAAGAGGTTAGGGATTTGGGGAACCTAATTGGGTTGTACAGAGAGTGGCATTCTCATTTGCTGCCCTATTACTCATTCGATCAATTTGTGCATGAAGTGGAACAAGTGGCGGCCACAAAAAGAGTCAAGGTCAATCTTTTGGCTGATAAGGTGGACACTCAACTGAATCTTGTTGAAAAATTATACATTGCCCTTGATCATTATTCACCAATATTGCAACATTATCCTGGAGTAAGACACTTTCTTCTATTCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008156 GO:0008284 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0019219 GO:0019222 GO:0022402 GO:0031298 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031570 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033262 GO:0033554 GO:0034641 GO:0034645 GO:0042127 GO:0043111 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044773 GO:0044774 GO:0045005 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048478 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1903047 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Swi3 zf-CCHC

Protein Analysis

246

Amino Acids

28.99

Weight (kDa)

5.32

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Swi3 PF07962 155 - 206 1.8e-11 Replication Fork Protection Component Swi3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 147
AciI CCGC 3 cut(s) 17, 95, 593
AcoI YGGCCR 1 cut(s) 594
AfaI GTAC 2 cut(s) 76, 521
AgsI TTSAA 4 cut(s) 461, 468, 483, 659
AjnI CCWGG 1 cut(s) 709
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 5 cut(s) 100, 221, 349, 362, 472
AluI AGCT 5 cut(s) 100, 221, 349, 362, 472
AoxI GGCC 1 cut(s) 594
ApeKI GCWGC 4 cut(s) 100, 221, 362, 544
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 681
AvrII CCTAGG 1 cut(s) 293
BbvI GCAGC 4 cut(s) 87, 208, 349, 531
BccI CCATC 2 cut(s) 181, 193
BciT130I CCWGG 1 cut(s) 711
BclI TGATCA 1 cut(s) 679
BfaI CTAG 4 cut(s) 218, 294, 410, 473
BisI GCNGC 5 cut(s) 101, 222, 363, 545, 594
BlnI CCTAGG 1 cut(s) 293
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 5 cut(s) 102, 223, 364, 546, 595
Bme1390I CCNGG 1 cut(s) 711
BmiI GGNNCC 1 cut(s) 506
BmrFI CCNGG 1 cut(s) 711
BmsI GCATC 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 732
Bpu1102I GCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 669
BseBI CCWGG 1 cut(s) 711
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 5 cut(s) 117, 132, 237, 383, 468
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 4 cut(s) 87, 208, 349, 531
BsgI GTGCAG 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 596
BsmI GAATGC 2 cut(s) 199, 532
BsnI GGCC 1 cut(s) 596
Bsp1407I TGTACA 1 cut(s) 519
Bsp143I GATC 3 cut(s) 249, 562, 679
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 3 cut(s) 17, 95, 593
BspANI GGCC 1 cut(s) 596
BspCNI CTCAG 5 cut(s) 118, 133, 238, 382, 467
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 506
BsrDI GCAATG 1 cut(s) 669
BsrGI TGTACA 1 cut(s) 519
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 3 cut(s) 249, 562, 679
BssT1I CCWWGG 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 711
Bst6I CTCTTC 2 cut(s) 129, 144
BstAUI TGTACA 1 cut(s) 519
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 5 cut(s) 126, 141, 246, 369, 454
BstF5I GGATG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 3 cut(s) 252, 565, 682
BstMBI GATC 3 cut(s) 249, 562, 679
BstNI CCWGG 1 cut(s) 711
BstSCI CCNGG 1 cut(s) 709
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 4 cut(s) 87, 208, 349, 531
BsuRI GGCC 1 cut(s) 596
BtgZI GCGATG 1 cut(s) 212
BtsCI GGATG 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 243
CfoI GCGC 1 cut(s) 147
Csp6I GTAC 2 cut(s) 75, 520
CviAII CATG 2 cut(s) 575, 738
CviQI GTAC 2 cut(s) 75, 520
DdeI CTNAG 5 cut(s) 126, 141, 246, 369, 454
DpnI GATC 3 cut(s) 251, 564, 681
DpnII GATC 3 cut(s) 249, 562, 679
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 2 cut(s) 129, 144
EarI CTCTTC 2 cut(s) 129, 144
EciI GGCGGA 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 709
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 2 cut(s) 578, 741
FaiI YATR 8 cut(s) 65, 226, 228, 303, 390, 576, 667, 739
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FatI CATG 2 cut(s) 574, 737
FauI CCCGC 1 cut(s) 24
FauNDI CATATG 1 cut(s) 226
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 5 cut(s) 101, 222, 363, 545, 594
FokI GGATG 1 cut(s) 199
Fsp4HI GCNGC 5 cut(s) 101, 222, 363, 545, 594
FspBI CTAG 4 cut(s) 218, 294, 410, 473
GlaI GCGC 1 cut(s) 146
GluI GCNGC 5 cut(s) 101, 222, 363, 545, 594
GsuI CTGGAG 1 cut(s) 732
HaeIII GGCC 1 cut(s) 596
HhaI GCGC 1 cut(s) 147
Hin1II CATG 2 cut(s) 578, 741
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 3 cut(s) 464, 606, 649
HphI GGTGA 1 cut(s) 681
Hpy166II GTNNAC 2 cut(s) 6, 637
Hpy188I TCNGA 2 cut(s) 324, 372
Hpy188III TCNNGA 2 cut(s) 107, 380
Hpy8I GTNNAC 2 cut(s) 6, 637
HpyAV CCTTC 1 cut(s) 415
HpyCH4V TGCA 6 cut(s) 122, 224, 241, 365, 574, 700
HpyF3I CTNAG 5 cut(s) 126, 141, 246, 369, 454
Hsp92II CATG 2 cut(s) 578, 741
HspAI GCGC 1 cut(s) 145
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 3 cut(s) 249, 562, 679
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 4 cut(s) 33, 227, 696, 723
Lsp1109I GCAGC 4 cut(s) 87, 208, 349, 531
LweI GCATC 1 cut(s) 374
MaeI CTAG 4 cut(s) 218, 294, 410, 473
MaeIII GTNAC 1 cut(s) 354
MalI GATC 3 cut(s) 251, 564, 681
MboI GATC 3 cut(s) 249, 562, 679
MboII GAAGA 5 cut(s) 146, 161, 355, 473, 719
MluCI AATT 5 cut(s) 34, 114, 510, 566, 662
MlyI GAGTC 1 cut(s) 615
MnlI CCTC 5 cut(s) 103, 130, 145, 250, 481
MseI TTAA 7 cut(s) 12, 33, 44, 159, 207, 264, 402
MspR9I CCNGG 1 cut(s) 711
Mva1269I GAATGC 2 cut(s) 199, 532
MvaI CCWGG 1 cut(s) 711
MvnI CGCG 1 cut(s) 147
NdeI CATATG 1 cut(s) 226
NdeII GATC 3 cut(s) 249, 562, 679
NlaIII CATG 2 cut(s) 578, 741
NlaIV GGNNCC 1 cut(s) 506
PctI GAATGC 2 cut(s) 199, 532
PfeI GAWTC 2 cut(s) 464, 649
PfoI TCCNGGA 1 cut(s) 709
PkrI GCNGC 5 cut(s) 102, 223, 364, 546, 595
PleI GAGTC 1 cut(s) 614
PpsI GAGTC 1 cut(s) 614
Psp6I CCWGG 1 cut(s) 709
PspGI CCWGG 1 cut(s) 709
PspN4I GGNNCC 1 cut(s) 506
RsaI GTAC 2 cut(s) 76, 521
RsaNI GTAC 2 cut(s) 75, 520
SaqAI TTAA 7 cut(s) 12, 33, 44, 159, 207, 264, 402
SatI GCNGC 5 cut(s) 101, 222, 363, 545, 594
Sau3AI GATC 3 cut(s) 249, 562, 679
SchI GAGTC 1 cut(s) 615
ScrFI CCNGG 1 cut(s) 711
SfaNI GCATC 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 5 cut(s) 34, 114, 510, 566, 662
SsiI CCGC 3 cut(s) 17, 95, 593
SspI AATATT 1 cut(s) 696
SspMI CTAG 4 cut(s) 218, 294, 410, 473
StyD4I CCNGG 1 cut(s) 709
StyI CCWWGG 1 cut(s) 293
TaqI TCGA 1 cut(s) 561
TaqII GACCGA 1 cut(s) 70
TasI AATT 5 cut(s) 34, 114, 510, 566, 662
TatI WGTACW 2 cut(s) 74, 519
TauI GCSGC 1 cut(s) 596
TfiI GAWTC 2 cut(s) 464, 649
Tru1I TTAA 7 cut(s) 12, 33, 44, 159, 207, 264, 402
Tru9I TTAA 7 cut(s) 12, 33, 44, 159, 207, 264, 402
TseI GCWGC 4 cut(s) 100, 221, 362, 544
TspDTI ATGAA 6 cut(s) 228, 282, 344, 439, 458, 591
XmaJI CCTAGG 1 cut(s) 293
XspI CTAG 4 cut(s) 218, 294, 410, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.