Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013497

Physical Location & Seq

Genomic Coordinates Reverse (-)

9092964 .. 9097834

Gene Structure 4871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1058700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTGACCACTCCGATGACTTAGACGAACTCCTCGATAGTGCTTTGGATGACTTCCAGAATCTCAACCTCCAGAAACCCTCCTCCCTTCAAAGAAGTAAAGAATCTACGGAGGACAAGAAAGAACTGCCTTCCTTGCCTGCTGGGGTTCAAGGACTTGGCATGGGATTACCTGAAATAAGAGCCAAGAAAAAGGGGAAACAGAAGGTTTCAGGAGAATCGCATGTTTCTGAGGCACTTGATAAGCTCAGAGAGCAGACCAGAGAAGCTGTTAAGGGACTTGAATCTGTGACAAGTGCAAAACCAGGTGGAGATGATATTGTGGACGATGCAATGGTGGAGGATTGGGTCAAGCAATTCGAGAGTCTTGCTGGGTCTCAGGACATGGAATCTATTGTTGAGACCATGATGCAGCAGCTTTTGTCCAAGGATATTCTTCATGAACCGATGAAGGAAATTGGAGAAAGATATCCAAACTGGTTGAAAGAGCATGAAGCAAGTTTGAGTAAAGAGGATTATGAACGTTATTCTCACCAGTACGGACTCATAAAAGAACTTAACGAAGTCTATGAAAAAGATTCTGGAAACTTCAACAAGATTTTTGAGCTCATGCAGAAAATGCAAGAATGTGGCCAACCACCTAATGATATTGTGCAAGAGCTAGCTCCTGATTTTGATATAGCTAGCCTTGGACAACTGTCTCCAGAGATGCTGGAGTCTCAGAAAAATTGTTGTATAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000268 GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0031090 GO:0031903 GO:0033036 GO:0033218 GO:0033328 GO:0033365 GO:0034613 GO:0042277 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex19

Protein Analysis

248

Amino Acids

27.85

Weight (kDa)

4.58

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex19	PF04614	25 - 246	6.3e-38	Pex19 protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17550 AT5G17550
fragaria_vesca	FvH4_5g18890 FvH4_5g18890
malus_domestica	MD06G1058700.v1.1
prunus_persica	Prupe.5G069700_v2.0.a1 Prupe.5G069700_v2.0.a1
pyrus_communis	pycom06g04900
rosa_chinensis	RchiOBHm_Chr7g0203271
rosa_laevigata	RLG00000003538
rosa_multiflora	Rmu_sc0003582.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253890
rosa_rugosa	Rorug07G0075500
rosa_samantha	Rh7AG205000 Rh7BG204400 Rh7CG216000 Rh7DG211600
rosa_wichuraiana	Rw7G017850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	523
AcoI	YGGCCR	1 cut(s)	631
AfaI	GTAC	1 cut(s)	539
AgsI	TTSAA	5 cut(s)	92, 152, 284, 484, 592
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	7 cut(s)	247, 269, 418, 607, 661, 665, 683
AluI	AGCT	7 cut(s)	247, 269, 418, 607, 661, 665, 683
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	4 cut(s)	381, 395, 705, 723
AoxI	GGCC	1 cut(s)	631
ApeKI	GCWGC	2 cut(s)	412, 415
AsuHPI	GGTGA	1 cut(s)	524
AsuNHI	GCTAGC	2 cut(s)	661, 683
BalI	TGGCCA	1 cut(s)	633
BanII	GRGCYC	1 cut(s)	609
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	2 cut(s)	424, 427
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	4 cut(s)	381, 395, 705, 723
BfaI	CTAG	2 cut(s)	662, 684
BisI	GCNGC	2 cut(s)	413, 416
BlsI	GCNGC	2 cut(s)	414, 417
Bme1390I	CCNGG	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	3 cut(s)	319, 399, 699
BmtI	GCTAGC	2 cut(s)	665, 687
BoxI	GACNNNNGTC	1 cut(s)	697
BpmI	CTGGAG	3 cut(s)	56, 687, 734
BsaI	GGTCTC	2 cut(s)	381, 395
BsaJI	CCNNGG	2 cut(s)	426, 688
Bse1I	ACTGG	2 cut(s)	482, 535
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	426, 688
BseGI	GGATG	1 cut(s)	55
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	4 cut(s)	222, 262, 392, 734
BseNI	ACTGG	2 cut(s)	482, 535
BseRI	GAGGAG	2 cut(s)	23, 73
BseXI	GCAGC	2 cut(s)	424, 427
BseYI	CCCAGC	2 cut(s)	143, 371
BshFI	GGCC	1 cut(s)	633
BsiHKAI	GWGCWC	1 cut(s)	609
BslFI	GGGAC	1 cut(s)	291
BsmAI	GTCTC	4 cut(s)	381, 395, 705, 723
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	633
Bso31I	GGTCTC	2 cut(s)	381, 395
Bsp1286I	GDGCHC	1 cut(s)	609
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	4 cut(s)	223, 261, 391, 733
BspHI	TCATGA	1 cut(s)	439
BspOI	GCTAGC	2 cut(s)	665, 687
BspTNI	GGTCTC	2 cut(s)	381, 395
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	482, 535
BssECI	CCNNGG	2 cut(s)	426, 688
BssT1I	CCWWGG	2 cut(s)	426, 688
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	699
BstAPI	GCANNNNNTGC	1 cut(s)	619
BstC8I	GCNNGC	3 cut(s)	141, 663, 685
BstDEI	CTNAG	5 cut(s)	22, 231, 248, 378, 720
BstF5I	GGATG	1 cut(s)	55
BstMAI	GTCTC	4 cut(s)	381, 395, 705, 723
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 253, 619
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	1 cut(s)	227
BstPAI	GACNNNNGTC	1 cut(s)	697
BstSCI	CCNGG	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	424, 427
BsuRI	GGCC	1 cut(s)	633
BtsCI	GGATG	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	141, 663, 685
CciI	TCATGA	1 cut(s)	439
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	7 cut(s)	163, 224, 385, 406, 440, 491, 610
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	5 cut(s)	22, 231, 248, 378, 720
EaeI	YGGCCR	1 cut(s)	631
Ecl136II	GAGCTC	1 cut(s)	607
Eco130I	CCWWGG	2 cut(s)	426, 688
Eco24I	GRGCYC	1 cut(s)	609
Eco31I	GGTCTC	2 cut(s)	381, 395
Eco32I	GATATC	1 cut(s)	470
Eco53kI	GAGCTC	1 cut(s)	607
EcoICRI	GAGCTC	1 cut(s)	607
EcoRII	CCWGG	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	470
EcoT14I	CCWWGG	2 cut(s)	426, 688
EcoT38I	GRGCYC	1 cut(s)	609
ErhI	CCWWGG	2 cut(s)	426, 688
FaeI	CATG	7 cut(s)	166, 227, 388, 409, 443, 494, 613
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	7 cut(s)	162, 223, 384, 405, 439, 490, 609
Fnu4HI	GCNGC	2 cut(s)	413, 416
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	609
Fsp4HI	GCNGC	2 cut(s)	413, 416
FspBI	CTAG	2 cut(s)	662, 684
GluI	GCNGC	2 cut(s)	413, 416
GsaI	CCCAGC	2 cut(s)	147, 375
GsuI	CTGGAG	3 cut(s)	56, 687, 734
HaeIII	GGCC	1 cut(s)	633
Hin1II	CATG	7 cut(s)	166, 227, 388, 409, 443, 494, 613
HinfI	GANTC	9 cut(s)	61, 104, 218, 284, 364, 389, 543, 578, 716
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	4 cut(s)	16, 232, 251, 723
Hpy188III	TCNNGA	9 cut(s)	58, 73, 213, 361, 380, 440, 582, 668, 704
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	4 cut(s)	98, 141, 199, 445
HpyCH4III	ACNGT	1 cut(s)	699
HpyCH4IV	ACGT	1 cut(s)	523
HpyCH4V	TGCA	6 cut(s)	299, 332, 412, 613, 622, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 253, 619
HpyF3I	CTNAG	5 cut(s)	22, 231, 248, 378, 720
HpySE526I	ACGT	1 cut(s)	523
Hsp92II	CATG	7 cut(s)	166, 227, 388, 409, 443, 494, 613
LmnI	GCTCC	1 cut(s)	670
Lsp1109I	GCAGC	2 cut(s)	424, 427
LweI	GCATC	3 cut(s)	319, 399, 699
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	2 cut(s)	662, 684
MaeII	ACGT	1 cut(s)	523
MaeIII	GTNAC	1 cut(s)	289
MboII	GAAGA	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	609
MlsI	TGGCCA	1 cut(s)	633
MluCI	AATT	3 cut(s)	356, 456, 727
MluNI	TGGCCA	1 cut(s)	633
MlyI	GAGTC	3 cut(s)	373, 537, 725
MnlI	CCTC	8 cut(s)	44, 80, 91, 94, 106, 226, 334, 505
Mox20I	TGGCCA	1 cut(s)	633
MscI	TGGCCA	1 cut(s)	633
MseI	TTAA	2 cut(s)	273, 558
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	633
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	3 cut(s)	136, 253, 619
NheI	GCTAGC	2 cut(s)	661, 683
NlaIII	CATG	7 cut(s)	166, 227, 388, 409, 443, 494, 613
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	227
PagI	TCATGA	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	6 cut(s)	61, 104, 218, 284, 389, 578
PkrI	GCNGC	2 cut(s)	414, 417
PleI	GAGTC	3 cut(s)	372, 537, 724
PpsI	GAGTC	3 cut(s)	372, 537, 724
PshAI	GACNNNNGTC	1 cut(s)	697
Psp124BI	GAGCTC	1 cut(s)	609
Psp1406I	AACGTT	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	304
PspFI	CCCAGC	2 cut(s)	143, 371
PspGI	CCWGG	1 cut(s)	304
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	609
SaqAI	TTAA	2 cut(s)	273, 558
SatI	GCNGC	2 cut(s)	413, 416
SchI	GAGTC	3 cut(s)	373, 537, 725
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	609
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	3 cut(s)	319, 399, 699
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	3 cut(s)	356, 456, 727
SspMI	CTAG	2 cut(s)	662, 684
SstI	GAGCTC	1 cut(s)	609
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	2 cut(s)	426, 688
TaaI	ACNGT	1 cut(s)	699
TaiI	ACGT	1 cut(s)	526
TaqI	TCGA	2 cut(s)	36, 360
TasI	AATT	3 cut(s)	356, 456, 727
TfiI	GAWTC	6 cut(s)	61, 104, 218, 284, 389, 578
Tru1I	TTAA	2 cut(s)	273, 558
Tru9I	TTAA	2 cut(s)	273, 558
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	412, 415
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	6 cut(s)	428, 456, 464, 507, 534, 585
TspGWI	ACGGA	2 cut(s)	125, 555
XceI	RCATGY	1 cut(s)	227
XspI	CTAG	2 cut(s)	662, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.