Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013497

Physical Location & Seq

Genomic Coordinates Forward (+)

6572896 .. 6577367

Gene Structure 4472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCTGACCACTCCGATGACTTAGACGAACTCCTCGATAGTGCTTTGGATGACTTCCAGAATCTCAACCTCCAGAAACCCTCCCTTCAAAGAAGTAAAGAATCTACGGAGGACAAGAAAGAACCTTCCTTGCCTGCTGGGGTTCAAGGACTTGGCATGGGATTACCTGAAATAAGGGCAAAGAAAAAGGGGAAGCAAAAGGTTTCAGGAGAATCGCATGTTTCTGAGGCACTTGATAAGCTCAGAGAGCAGACAAGAGAAGCTGTTAAGGGACTCGAATCCGTGACAAGTGCAAAACCAGGTGGAGATGATATTGTGGACGATGCAATGGTGGAGGATTGGGTCAAGCAGTTCGAGAGTCTTGCTGGGTCTCAGGACATGGAATCTATTGTTGAGACCATGATGCAGCAGCTGTTGTCTAAGGATATTCTTCATGAACCAATGAAGGAAATTGGAGAAAGATATCCAAAGTGGTTGAAAGAGCATGAAGCAAGTTTGAGTAAAGAGGATTATGAACGTTATTCTCACCAGTACGGACTCATAAAAGAACTTAACGAAGTCTACGAAAAAGATTCTGGAAACTTCAACAAGATTTTTGAGCTCATGCAGAAAATGCAAGAATGTGGCCAACCACCTAATGATATTGTGCAAGAACTAGCTCCTGATTTTGATCTAGCTAGCCTTGGACAACTGTCTCCAGAGATGCTGGAGTCTCAGAAAAATTGTTGTATAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000268 GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0031090 GO:0031903 GO:0033036 GO:0033218 GO:0033328 GO:0033365 GO:0034613 GO:0042277 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex19

Protein Analysis

246

Amino Acids

27.66

Weight (kDa)

4.62

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17550 AT5G17550
fragaria_vesca	FvH4_5g18890 FvH4_5g18890
malus_domestica	MD06G1058700.v1.1
prunus_persica	Prupe.5G069700_v2.0.a1 Prupe.5G069700_v2.0.a1
pyrus_communis	pycom06g04900
rosa_chinensis	RchiOBHm_Chr7g0203271
rosa_laevigata	RLG00000003538
rosa_multiflora	Rmu_sc0003582.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253890
rosa_rugosa	Rorug07G0075500
rosa_samantha	Rh7AG205000 Rh7BG204400 Rh7CG216000 Rh7DG211600
rosa_wichuraiana	Rw7G017850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	561
AclI	AACGTT	1 cut(s)	517
AcoI	YGGCCR	1 cut(s)	625
AfaI	GTAC	1 cut(s)	533
AgsI	TTSAA	4 cut(s)	89, 146, 478, 586
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	6 cut(s)	241, 263, 412, 601, 659, 677
AluI	AGCT	6 cut(s)	241, 263, 412, 601, 659, 677
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	4 cut(s)	375, 389, 699, 717
AlwNI	CAGNNNCTG	1 cut(s)	412
AoxI	GGCC	1 cut(s)	625
ApeKI	GCWGC	2 cut(s)	406, 409
AsuHPI	GGTGA	1 cut(s)	518
AsuNHI	GCTAGC	1 cut(s)	677
BalI	TGGCCA	1 cut(s)	627
BanII	GRGCYC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	418, 421
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	4 cut(s)	375, 389, 699, 717
BfaI	CTAG	3 cut(s)	656, 674, 678
BisI	GCNGC	2 cut(s)	407, 410
BlsI	GCNGC	2 cut(s)	408, 411
Bme1390I	CCNGG	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	3 cut(s)	313, 393, 693
BmtI	GCTAGC	1 cut(s)	681
BoxI	GACNNNNGTC	1 cut(s)	691
BpmI	CTGGAG	3 cut(s)	56, 681, 728
BsaBI	GATNNNNATC	1 cut(s)	669
BsaI	GGTCTC	2 cut(s)	375, 389
BsaJI	CCNNGG	1 cut(s)	682
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	333
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	682
BseGI	GGATG	1 cut(s)	55
BseJI	GATNNNNATC	1 cut(s)	669
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	4 cut(s)	216, 256, 386, 728
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	418, 421
BseYI	CCCAGC	2 cut(s)	137, 365
BshFI	GGCC	1 cut(s)	627
BsiHKAI	GWGCWC	1 cut(s)	603
BslFI	GGGAC	1 cut(s)	285
BsmAI	GTCTC	4 cut(s)	375, 389, 699, 717
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	627
Bso31I	GGTCTC	2 cut(s)	375, 389
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	1 cut(s)	670
BspANI	GGCC	1 cut(s)	627
BspCNI	CTCAG	4 cut(s)	217, 255, 385, 727
BspHI	TCATGA	1 cut(s)	433
BspOI	GCTAGC	1 cut(s)	681
BspTNI	GGTCTC	2 cut(s)	375, 389
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	529
BssECI	CCNNGG	1 cut(s)	682
BssMI	GATC	1 cut(s)	670
BssT1I	CCWWGG	1 cut(s)	682
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	693
BstAPI	GCANNNNNTGC	1 cut(s)	613
BstC8I	GCNNGC	2 cut(s)	135, 679
BstDEI	CTNAG	6 cut(s)	22, 225, 242, 372, 420, 714
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	673
BstMAI	GTCTC	4 cut(s)	375, 389, 699, 717
BstMBI	GATC	1 cut(s)	670
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 613
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	221
BstPAI	GACNNNNGTC	1 cut(s)	691
BstSCI	CCNGG	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	418, 421
BsuRI	GGCC	1 cut(s)	627
BtsCI	GGATG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	135, 679
CaiI	CAGNNNCTG	1 cut(s)	412
CciI	TCATGA	1 cut(s)	433
CsiI	ACCWGGT	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	7 cut(s)	157, 218, 379, 400, 434, 485, 604
CviJI	RGCY	9 cut(s)	5, 241, 263, 412, 601, 627, 659, 677, 681
CviKI_1	RGCY	9 cut(s)	5, 241, 263, 412, 601, 627, 659, 677, 681
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	6 cut(s)	22, 225, 242, 372, 420, 714
DpnI	GATC	1 cut(s)	672
DpnII	GATC	1 cut(s)	670
EaeI	YGGCCR	1 cut(s)	625
Ecl136II	GAGCTC	1 cut(s)	601
Eco130I	CCWWGG	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	603
Eco31I	GGTCTC	2 cut(s)	375, 389
Eco32I	GATATC	1 cut(s)	464
Eco53kI	GAGCTC	1 cut(s)	601
EcoICRI	GAGCTC	1 cut(s)	601
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	7 cut(s)	160, 221, 382, 403, 437, 488, 607
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	7 cut(s)	156, 217, 378, 399, 433, 484, 603
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	2 cut(s)	407, 410
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	2 cut(s)	407, 410
FspBI	CTAG	3 cut(s)	656, 674, 678
GluI	GCNGC	2 cut(s)	407, 410
GsaI	CCCAGC	2 cut(s)	141, 369
GsuI	CTGGAG	3 cut(s)	56, 681, 728
HaeIII	GGCC	1 cut(s)	627
Hin1II	CATG	7 cut(s)	160, 221, 382, 403, 437, 488, 607
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	2 cut(s)	319, 562
Hpy188I	TCNGA	4 cut(s)	16, 226, 245, 717
Hpy188III	TCNNGA	9 cut(s)	58, 73, 207, 355, 374, 434, 576, 662, 698
Hpy8I	GTNNAC	2 cut(s)	319, 562
HpyAV	CCTTC	3 cut(s)	95, 135, 439
HpyCH4III	ACNGT	1 cut(s)	693
HpyCH4IV	ACGT	1 cut(s)	517
HpyCH4V	TGCA	6 cut(s)	293, 326, 406, 607, 616, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 613
HpyF3I	CTNAG	6 cut(s)	22, 225, 242, 372, 420, 714
HpySE526I	ACGT	1 cut(s)	517
Hsp92II	CATG	7 cut(s)	160, 221, 382, 403, 437, 488, 607
Kzo9I	GATC	1 cut(s)	670
LmnI	GCTCC	1 cut(s)	664
Lsp1109I	GCAGC	2 cut(s)	418, 421
LweI	GCATC	3 cut(s)	313, 393, 693
MabI	ACCWGGT	1 cut(s)	298
MaeI	CTAG	3 cut(s)	656, 674, 678
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	672
MboI	GATC	1 cut(s)	670
MboII	GAAGA	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	603
MlsI	TGGCCA	1 cut(s)	627
MluCI	AATT	2 cut(s)	450, 721
MluNI	TGGCCA	1 cut(s)	627
MlyI	GAGTC	4 cut(s)	267, 367, 531, 719
MnlI	CCTC	7 cut(s)	44, 80, 91, 103, 220, 328, 499
Mox20I	TGGCCA	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	2 cut(s)	267, 552
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	627
MspA1I	CMGCKG	1 cut(s)	412
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	247, 613
NdeII	GATC	1 cut(s)	670
NheI	GCTAGC	1 cut(s)	677
NlaIII	CATG	7 cut(s)	160, 221, 382, 403, 437, 488, 607
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	1 cut(s)	221
PagI	TCATGA	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	2 cut(s)	33, 561
PfeI	GAWTC	6 cut(s)	61, 101, 212, 278, 383, 572
PkrI	GCNGC	2 cut(s)	408, 411
PleI	GAGTC	4 cut(s)	267, 366, 531, 718
PpsI	GAGTC	4 cut(s)	267, 366, 531, 718
PshAI	GACNNNNGTC	1 cut(s)	691
Psp124BI	GAGCTC	1 cut(s)	603
Psp1406I	AACGTT	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	2 cut(s)	137, 365
PspGI	CCWGG	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	412
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
RseI	CAYNNNNRTG	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	603
SaqAI	TTAA	2 cut(s)	267, 552
SatI	GCNGC	2 cut(s)	407, 410
Sau3AI	GATC	1 cut(s)	670
SchI	GAGTC	4 cut(s)	267, 367, 531, 719
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	603
SexAI	ACCWGGT	1 cut(s)	298
SfaNI	GCATC	3 cut(s)	313, 393, 693
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	2 cut(s)	450, 721
SspMI	CTAG	3 cut(s)	656, 674, 678
SstI	GAGCTC	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	1 cut(s)	693
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	3 cut(s)	36, 276, 354
TasI	AATT	2 cut(s)	450, 721
TfiI	GAWTC	6 cut(s)	61, 101, 212, 278, 383, 572
Tru1I	TTAA	2 cut(s)	267, 552
Tru9I	TTAA	2 cut(s)	267, 552
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	406, 409
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	5 cut(s)	422, 450, 458, 501, 528
TspGWI	ACGGA	3 cut(s)	122, 271, 549
XceI	RCATGY	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	3 cut(s)	656, 674, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.