Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013137

Physical Location & Seq

Genomic Coordinates Forward (+)

6266974 .. 6268638

Gene Structure 1665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTCGAGTGCGGTGGACGCTACGGGAAACCCGATCCCTACTTCGGCGGTTTTAACGGCGTCAGCGAAGCATATAGGTATGAGGTGTATGCCGGAGAATGTTGCGTTCCTCAAATGCAAGAAGAATGATCCAAACCCAGAGAAGTGTCTCGACAAAGGTCGTGACGTCACTCGCTGCGTGCTTGGCTTGCTGAAGGATCTTCACCAGAAGTGCCAAAAGGAGATGGATGATTATGTTGGGTGTATGTATTACTACACAAACGAGTTTGATCTGTGTAGGAAAGAGCAAGAAGCCTTCGAGAAAGTGTGTCCCTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

CHCH

Protein Analysis

106

Amino Acids

11.97

Weight (kDa)

7.51

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHCH	PF06747	71 - 103	2e-06	CHCH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18800 AT5G18800
fragaria_vesca	FvH4_4g16930
malus_domestica	MD05G1041600.v1.1 MD10G1048000.v1.1 MD13G1175600.v1.1 MD16G1177400.v1.1
prunus_persica	Prupe.1G144300_v2.0.a1
pyrus_communis	pycom05g03430 pycom10g03400
rosa_chinensis	RchiOBHm_Chr4g0420511
rosa_laevigata	RLG00000007755
rosa_multiflora	Rmu_sc0002248.1_g000050
rosa_roxburghii	Rroxscaffold_5G00363130
rosa_rugosa	Rorug04G0164700 Rorug04G0164700
rosa_samantha	Rh4BG228800
rosa_wichuraiana	Rw4G019520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	168
AciI	CCGC	2 cut(s)	11, 47
AclWI	GGATC	3 cut(s)	28, 122, 204
AcuI	CTGAAG	1 cut(s)	212
AcyI	GRCGYC	2 cut(s)	59, 165
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	3 cut(s)	28, 122, 204
ApeKI	GCWGC	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	152
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BoxI	GACNNNNGTC	1 cut(s)	156
BsaHI	GRCGYC	2 cut(s)	59, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	33, 127, 196, 268
BspACI	CCGC	2 cut(s)	11, 47
BspPI	GGATC	3 cut(s)	28, 122, 204
BssMI	GATC	4 cut(s)	33, 127, 196, 268
BssNI	GRCGYC	2 cut(s)	59, 165
BstACI	GRCGYC	2 cut(s)	59, 165
BstC8I	GCNNGC	2 cut(s)	179, 188
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	4 cut(s)	36, 130, 199, 271
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	4 cut(s)	33, 127, 196, 268
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 183, 187
BstPAI	GACNNNNGTC	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	179, 188
CseI	GACGC	2 cut(s)	26, 48
CviJI	RGCY	2 cut(s)	186, 293
CviKI_1	RGCY	2 cut(s)	186, 293
DpnI	GATC	4 cut(s)	35, 129, 198, 270
DpnII	GATC	4 cut(s)	33, 127, 196, 268
Eco57I	CTGAAG	1 cut(s)	212
FaiI	YATR	6 cut(s)	72, 74, 80, 89, 234, 245
FaqI	GGGAC	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	175
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	2 cut(s)	26, 48
Hin1I	GRCGYC	2 cut(s)	59, 165
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188III	TCNNGA	3 cut(s)	149, 161, 298
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	187, 304
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	1 cut(s)	117
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 183, 187
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	2 cut(s)	59, 165
Kzo9I	GATC	4 cut(s)	33, 127, 196, 268
LpnPI	CCDG	3 cut(s)	105, 150, 218
Lsp1109I	GCAGC	1 cut(s)	161
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	161, 166
MalI	GATC	4 cut(s)	35, 129, 198, 270
MboI	GATC	4 cut(s)	33, 127, 196, 268
MboII	GAAGA	2 cut(s)	133, 191
MflI	RGATCY	1 cut(s)	196
MnlI	CCTC	2 cut(s)	75, 119
MseI	TTAA	1 cut(s)	53
MspI	CCGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	17, 183, 187
NdeII	GATC	4 cut(s)	33, 127, 196, 268
NmuCI	GTSAC	2 cut(s)	161, 166
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 62
PkrI	GCNGC	1 cut(s)	176
PshAI	GACNNNNGTC	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	4 cut(s)	33, 127, 196, 268
SetI	ASST	4 cut(s)	79, 86, 160, 168
SsiI	CCGC	2 cut(s)	11, 47
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	3 cut(s)	5, 150, 297
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TseFI	GTSAC	2 cut(s)	161, 166
TseI	GCWGC	1 cut(s)	174
Tsp45I	GTSAC	2 cut(s)	161, 166
ZraI	GACGTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.