Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013137

Physical Location & Seq

Genomic Coordinates Forward (+)

11336092 .. 11338557

Gene Structure 2466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G144300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCCAGCGCAGTGGACGCAGCAGGAGATCCAATCCCAACATCGGCAGTTCTGACGGCGGCGTCCAAGCACATTCAGTTCCAGTGCCAAGCCGAGAACGTGGCTTTTCTCAAGTGCAAGAAGAAAGATCCGAACCCTGAGAAGTGTCTCGACAAAGGTCGCCAAGTCACTCGATGCGTTCTTAGCCTGTTGAAAGATCTTCATCAGAGGTGCACGAAAGAGATGGATGCTTATGTTGGATGCATGTATTACAATACAAATGAATTTGAATTATGTCGCAAAGAGCAAGATGAATTCGAGAAAAAATGCCCATTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0009536 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

CHCH

Protein Analysis

107

Amino Acids

11.95

Weight (kDa)

7.51

Isoelectric Point (pI)

22.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18800 AT5G18800
fragaria_vesca	FvH4_4g16930
malus_domestica	MD05G1041600.v1.1 MD10G1048000.v1.1 MD13G1175600.v1.1 MD16G1177400.v1.1
prunus_persica	Prupe.1G144300_v2.0.a1
pyrus_communis	pycom05g03430 pycom10g03400
rosa_chinensis	RchiOBHm_Chr4g0420511
rosa_laevigata	RLG00000007755
rosa_multiflora	Rmu_sc0002248.1_g000050
rosa_roxburghii	Rroxscaffold_5G00363130
rosa_rugosa	Rorug04G0164700 Rorug04G0164700
rosa_samantha	Rh4BG228800
rosa_wichuraiana	Rw4G019520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	2 cut(s)	23, 122
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	263, 293
AcyI	GRCGYC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	193, 269
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	152
Alw44I	GTGCAC	1 cut(s)	211
AlwI	GGATC	2 cut(s)	23, 122
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	2 cut(s)	263, 293
AspLEI	GCGC	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	152
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	2 cut(s)	21, 60
BlsI	GCNGC	2 cut(s)	22, 61
BmsI	GCATC	3 cut(s)	164, 217, 230
BoxI	GACNNNNGTC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	82
Bse8I	GATNNNNATC	1 cut(s)	201
BseGI	GGATG	2 cut(s)	232, 245
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	32
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	3 cut(s)	28, 127, 196
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	130
BspPI	GGATC	2 cut(s)	23, 122
BsrI	ACTGG	1 cut(s)	82
BssMI	GATC	3 cut(s)	28, 127, 196
BssNI	GRCGYC	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	138, 182
BstF5I	GGATG	2 cut(s)	232, 245
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	3 cut(s)	31, 130, 199
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	3 cut(s)	28, 127, 196
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 183
BstNSI	RCATGY	1 cut(s)	247
BstPAI	GACNNNNGTC	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	32
BstX2I	RGATCY	3 cut(s)	28, 127, 196
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	3 cut(s)	28, 127, 196
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	232, 245
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	18, 89
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	11
CseI	GACGC	2 cut(s)	26, 51
CviAII	CATG	2 cut(s)	244, 318
CviJI	RGCY	4 cut(s)	5, 92, 104, 186
CviKI_1	RGCY	4 cut(s)	5, 92, 104, 186
DdeI	CTNAG	2 cut(s)	138, 182
DpnI	GATC	3 cut(s)	30, 129, 198
DpnII	GATC	3 cut(s)	28, 127, 196
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	3
EcoRI	GAATTC	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	245
FaeI	CATG	2 cut(s)	247, 321
FaiI	YATR	4 cut(s)	234, 245, 274, 319
FatI	CATG	2 cut(s)	243, 317
Fnu4HI	GCNGC	2 cut(s)	21, 60
FokI	GGATG	2 cut(s)	239, 252
Fsp4HI	GCNGC	2 cut(s)	21, 60
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	21, 60
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	2 cut(s)	26, 51
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	247, 321
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
Hpy166II	GTNNAC	2 cut(s)	16, 213
Hpy188I	TCNGA	3 cut(s)	54, 132, 207
Hpy188III	TCNNGA	2 cut(s)	149, 298
Hpy8I	GTNNAC	2 cut(s)	16, 213
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	117, 213, 243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 183
HpyF3I	CTNAG	2 cut(s)	138, 182
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	247, 321
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	28, 127, 196
LpnPI	CCDG	5 cut(s)	9, 19, 95, 150, 200
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	3 cut(s)	164, 217, 230
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	3 cut(s)	30, 129, 198
MboI	GATC	3 cut(s)	28, 127, 196
MboII	GAAGA	2 cut(s)	133, 191
MflI	RGATCY	3 cut(s)	28, 127, 196
MhlI	GDGCHC	1 cut(s)	215
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	263, 269, 293
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	1 cut(s)	201
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	316
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	17, 183
NdeII	GATC	3 cut(s)	28, 127, 196
NlaIII	CATG	2 cut(s)	247, 321
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	245
NspI	RCATGY	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	22, 61
PshAI	GACNNNNGTC	1 cut(s)	156
PsuI	RGATCY	3 cut(s)	28, 127, 196
RseI	CAYNNNNRTG	1 cut(s)	316
SatI	GCNGC	2 cut(s)	21, 60
Sau3AI	GATC	3 cut(s)	28, 127, 196
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	3 cut(s)	102, 160, 212
SfaNI	GCATC	3 cut(s)	164, 217, 230
SmiMI	CAYNNNNRTG	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	263, 269, 293
SsiI	CCGC	1 cut(s)	59
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	150, 172, 297
TasI	AATT	3 cut(s)	263, 269, 293
TauI	GCSGC	1 cut(s)	62
TscAI	CASTG	2 cut(s)	18, 89
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	3 cut(s)	191, 276, 306
TspRI	CASTG	2 cut(s)	18, 89
VneI	GTGCAC	1 cut(s)	211
XapI	RAATTY	2 cut(s)	263, 293
XceI	RCATGY	1 cut(s)	247
Zsp2I	ATGCAT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.