Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013137

Physical Location & Seq

Genomic Coordinates Reverse (-)

6390599 .. 6393128

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1048000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCGAGCGCAGTGGACCCAGCAGGAGATCCGATCCCAACATCGGCAGTTCTGACGGCGGCAGCGAAGCACATTCAGTACAACTGCCAAGCGGAGAACGTGGCTTTTCTCAAGTGCAAGAAGAAGGACCCAAACCCGGAGAAGTGTCTCGACAAAGGTCGCCAAGTCACTCGATGCGTTCTTTCCCTGCTGAAAGATCTTCATCAGAAGTGCACGAAAGAGATGGATGCTTATGTTGGATGCATGTATTACAATACAAATGAATTCGAGTTATGTCGCAAAGAGCAAGAGGAATTCGAGAAAAAATGCCCATTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0009536 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

CHCH

Protein Analysis

107

Amino Acids

11.95

Weight (kDa)

7.51

Isoelectric Point (pI)

28.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHCH	PF06747	71 - 103	7e-08	CHCH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18800 AT5G18800
fragaria_vesca	FvH4_4g16930
malus_domestica	MD05G1041600.v1.1 MD10G1048000.v1.1 MD13G1175600.v1.1 MD16G1177400.v1.1
prunus_persica	Prupe.1G144300_v2.0.a1
pyrus_communis	pycom05g03430 pycom10g03400
rosa_chinensis	RchiOBHm_Chr4g0420511
rosa_laevigata	RLG00000007755
rosa_multiflora	Rmu_sc0002248.1_g000050
rosa_roxburghii	Rroxscaffold_5G00363130
rosa_rugosa	Rorug04G0164700 Rorug04G0164700
rosa_samantha	Rh4BG228800
rosa_wichuraiana	Rw4G019520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	59, 92
AclWI	GGATC	2 cut(s)	23, 28
AcsI	RAATTY	2 cut(s)	263, 293
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	43, 136
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	152
Alw44I	GTGCAC	1 cut(s)	211
AlwI	GGATC	2 cut(s)	23, 28
ApaLI	GTGCAC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	2 cut(s)	263, 293
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	16, 127
AsuC2I	CCSGG	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	16, 127
BaeGI	GKGCMC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	152
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	2 cut(s)	60, 63
BlsI	GCNGC	2 cut(s)	61, 64
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	2 cut(s)	16, 127
BmgT120I	GGNCC	2 cut(s)	16, 127
BmiI	GGNNCC	2 cut(s)	18, 129
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	3 cut(s)	164, 217, 230
BoxI	GACNNNNGTC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 136
Bse8I	GATNNNNATC	1 cut(s)	201
BseGI	GGATG	2 cut(s)	232, 245
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	43, 136
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	43, 136
BsmAI	GTCTC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	3 cut(s)	28, 33, 196
BspACI	CCGC	2 cut(s)	59, 92
BspLI	GGNNCC	2 cut(s)	18, 129
BspPI	GGATC	2 cut(s)	23, 28
BssMI	GATC	3 cut(s)	28, 33, 196
BstC8I	GCNNGC	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	232, 245
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	3 cut(s)	31, 36, 199
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	3 cut(s)	28, 33, 196
BstNSI	RCATGY	1 cut(s)	247
BstPAI	GACNNNNGTC	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	135
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	2 cut(s)	28, 196
BstYI	RGATCY	2 cut(s)	28, 196
BtsCI	GGATG	2 cut(s)	232, 245
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	16, 127
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	2 cut(s)	104, 317
CviKI_1	RGCY	2 cut(s)	104, 317
CviQI	GTAC	1 cut(s)	79
DpnI	GATC	3 cut(s)	30, 35, 198
DpnII	GATC	3 cut(s)	28, 33, 196
Eco47I	GGWCC	2 cut(s)	16, 127
EcoO109I	RGGNCCY	1 cut(s)	127
EcoRI	GAATTC	2 cut(s)	263, 293
EcoT22I	ATGCAT	1 cut(s)	245
FaeI	CATG	1 cut(s)	247
FaiI	YATR	3 cut(s)	234, 245, 274
FatI	CATG	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	60, 63
FokI	GGATG	2 cut(s)	239, 252
Fsp4HI	GCNGC	2 cut(s)	60, 63
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	60, 63
GsaI	CCCAGC	1 cut(s)	23
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	137
Hpy166II	GTNNAC	2 cut(s)	16, 213
Hpy188I	TCNGA	3 cut(s)	33, 54, 207
Hpy188III	TCNNGA	2 cut(s)	149, 298
Hpy8I	GTNNAC	2 cut(s)	16, 213
HpyAV	CCTTC	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	117, 213, 243
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	247
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	28, 33, 196
LpnPI	CCDG	4 cut(s)	9, 33, 150, 200
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	3 cut(s)	164, 217, 230
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	3 cut(s)	30, 35, 198
MboI	GATC	3 cut(s)	28, 33, 196
MboII	GAAGA	2 cut(s)	133, 191
MflI	RGATCY	2 cut(s)	28, 196
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	2 cut(s)	263, 293
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	1 cut(s)	283
Mph1103I	ATGCAT	1 cut(s)	245
MseI	TTAA	1 cut(s)	319
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	137
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	3 cut(s)	28, 33, 196
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	2 cut(s)	18, 129
NmuCI	GTSAC	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	245
NspI	RCATGY	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	61, 64
PpuMI	RGGWCCY	1 cut(s)	127
PshAI	GACNNNNGTC	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	18, 129
PspPI	GGNCC	2 cut(s)	16, 127
PspPPI	RGGWCCY	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	28, 196
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	319
SatI	GCNGC	2 cut(s)	60, 63
Sau3AI	GATC	3 cut(s)	28, 33, 196
Sau96I	GGNCC	2 cut(s)	16, 127
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	2 cut(s)	102, 160
SfaNI	GCATC	3 cut(s)	164, 217, 230
SinI	GGWCC	2 cut(s)	16, 127
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	263, 293
SsiI	CCGC	2 cut(s)	59, 92
StyD4I	CCNGG	1 cut(s)	135
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	4 cut(s)	150, 172, 267, 297
TasI	AATT	2 cut(s)	263, 293
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	319
Tru9I	TTAA	1 cut(s)	319
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	191, 276
TspRI	CASTG	1 cut(s)	18
VneI	GTGCAC	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	16, 127
XapI	RAATTY	2 cut(s)	263, 293
XceI	RCATGY	1 cut(s)	247
Zsp2I	ATGCAT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.