AT5G19590

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017193
Physical Location & Seq
Reverse (-)
6610428 .. 6612162
1735 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19590.2

Sequence Viewer

Length: 456 bp
ATGAAGATTTCTCTCTTCCTCCTCTCTATCCTCATTCTCTTACCCATCTCCCTACAAGATCCTACTCCTGAAGTCAAGAAACCAACTCGTGCACACGCAGAGCTCACGAATCATGGATTCCCAATTGGACTCCTACCTTTATCTGTCAAAGATTACTTCCTCAACCAAACCTCCGGCGACTTCTCTCTTTTCCTCAACGGAGCATGCAAAATCACGCTTCCACCTGATAACTACATCGCTACTTATTCTAACAAAGTAACGGGTCGGATCTCTCAGGGTAAGATCGCGGAGCTCCAAGGGATTCGGGTTCGGGCGTTTTTCAAGTCGTGGTCTATTACTGGGATTCGATCTTCTGGAGATAATCTTGTCTTTGAGGTTGCTGGGATAACTGCTAAATACCCTTCGAAGAATTTCGATGAGAGTCTTGATTGTGAAGGGAAACGATCTTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

151

Amino Acids

16.59

Weight (kDa)

9.14

Isoelectric Point (pI)

32.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 32 - 138 1.1e-24 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19590 AT5G19590
fragaria_vesca FvH4_1g05270
malus_domestica MD02G1056100.v1.1 MD15G1188900.v1.1
prunus_persica Prupe.7G227700_v2.0.a1 Prupe.7G227700_v2.0.a1
pyrus_communis pycom02g04510
rosa_chinensis RchiOBHm_Chr2g0090991
rosa_laevigata RLG00000016164
rosa_multiflora Rmu_sc0000792.1_g000022 Rmu_sc0003305.1_g000003
rosa_wichuraiana Rw2G005170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 287
AciI CCGC 1 cut(s) 287
AclWI GGATC 2 cut(s) 53, 275
AcsI RAATTY 1 cut(s) 409
AcuI CTGAAG 1 cut(s) 90
AgsI TTSAA 1 cut(s) 322
AluBI AGCT 2 cut(s) 103, 292
AluI AGCT 2 cut(s) 103, 292
Alw21I GWGCWC 3 cut(s) 94, 105, 294
Alw44I GTGCAC 1 cut(s) 90
AlwI GGATC 2 cut(s) 53, 275
ApaLI GTGCAC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 409
Asp700I GAANNNNTTC 1 cut(s) 410
AsuII TTCGAA 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 94
BanII GRGCYC 2 cut(s) 105, 294
BauI CACGAG 1 cut(s) 87
Bbv12I GWGCWC 3 cut(s) 94, 105, 294
BccI CCATC 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 348
BmuI ACTGGG 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bse1I ACTGG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 380
Bsh1236I CGCG 1 cut(s) 287
BsiHKAI GWGCWC 3 cut(s) 94, 105, 294
BsiSI CCGG 1 cut(s) 174
Bsp119I TTCGAA 1 cut(s) 404
Bsp1286I GDGCHC 3 cut(s) 94, 105, 294
Bsp143I GATC 5 cut(s) 58, 267, 282, 347, 443
BspACI CCGC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 1 cut(s) 287
BspPI GGATC 2 cut(s) 53, 275
BspT104I TTCGAA 1 cut(s) 404
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 5 cut(s) 58, 267, 282, 347, 443
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 295
Bst2BI CACGAG 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 287
BstKTI GATC 5 cut(s) 61, 270, 285, 350, 446
BstMBI GATC 5 cut(s) 58, 267, 282, 347, 443
BstNSI RCATGY 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 94
BstUI CGCG 1 cut(s) 287
BstX2I RGATCY 2 cut(s) 58, 267
BstYI RGATCY 2 cut(s) 58, 267
BtgZI GCGATG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 205
CviAII CATG 2 cut(s) 113, 204
CviJI RGCY 2 cut(s) 103, 292
CviKI_1 RGCY 2 cut(s) 103, 292
DdeI CTNAG 1 cut(s) 273
DpnI GATC 5 cut(s) 60, 269, 284, 349, 445
DpnII GATC 5 cut(s) 58, 267, 282, 347, 443
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 103, 292
Eco130I CCWWGG 1 cut(s) 295
Eco24I GRGCYC 2 cut(s) 105, 294
Eco53kI GAGCTC 2 cut(s) 103, 292
Eco57I CTGAAG 1 cut(s) 90
EcoICRI GAGCTC 2 cut(s) 103, 292
EcoT14I CCWWGG 1 cut(s) 295
EcoT38I GRGCYC 2 cut(s) 105, 294
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 2 cut(s) 116, 207
FaiI YATR 2 cut(s) 114, 205
FatI CATG 2 cut(s) 112, 203
FriOI GRGCYC 2 cut(s) 105, 294
GsaI CCCAGC 1 cut(s) 384
GsuI CTGGAG 1 cut(s) 375
HapII CCGG 1 cut(s) 174
Hin1II CATG 2 cut(s) 116, 207
HinfI GANTC 6 cut(s) 109, 117, 129, 301, 343, 421
HpaII CCGG 1 cut(s) 174
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 6 cut(s) 68, 76, 106, 354, 425, 453
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 411, 428
HpyCH4V TGCA 2 cut(s) 92, 207
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 2 cut(s) 116, 207
Kzo9I GATC 5 cut(s) 58, 267, 282, 347, 443
LmnI GCTCC 3 cut(s) 200, 289, 297
LpnPI CCDG 7 cut(s) 81, 187, 237, 260, 324, 339, 366
MaeIII GTNAC 1 cut(s) 256
MalI GATC 5 cut(s) 60, 269, 284, 349, 445
MboI GATC 5 cut(s) 58, 267, 282, 347, 443
MboII GAAGA 6 cut(s) 7, 16, 342, 418, 438, 441
MfeI CAATTG 1 cut(s) 123
MflI RGATCY 2 cut(s) 58, 267
MhlI GDGCHC 3 cut(s) 94, 105, 294
MluCI AATT 2 cut(s) 123, 409
MlyI GAGTC 2 cut(s) 123, 430
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 7 cut(s) 29, 32, 41, 170, 181, 203, 367
MroXI GAANNNNTTC 1 cut(s) 410
MspI CCGG 1 cut(s) 174
MunI CAATTG 1 cut(s) 123
MvnI CGCG 1 cut(s) 287
NdeII GATC 5 cut(s) 58, 267, 282, 347, 443
NlaIII CATG 2 cut(s) 116, 207
NspI RCATGY 1 cut(s) 207
NspV TTCGAA 1 cut(s) 404
PaeI GCATGC 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 410
PfeI GAWTC 4 cut(s) 109, 117, 301, 343
PleI GAGTC 2 cut(s) 123, 429
PpsI GAGTC 2 cut(s) 123, 429
Psp124BI GAGCTC 2 cut(s) 105, 294
PspFI CCCAGC 1 cut(s) 380
PsuI RGATCY 2 cut(s) 58, 267
SacI GAGCTC 2 cut(s) 105, 294
Sau3AI GATC 5 cut(s) 58, 267, 282, 347, 443
SchI GAGTC 2 cut(s) 123, 430
SduI GDGCHC 3 cut(s) 94, 105, 294
SetI ASST 6 cut(s) 105, 139, 173, 226, 294, 378
SfuI TTCGAA 1 cut(s) 404
SphI GCATGC 1 cut(s) 207
Sse9I AATT 2 cut(s) 123, 409
SsiI CCGC 1 cut(s) 287
SstI GAGCTC 2 cut(s) 105, 294
StyI CCWWGG 1 cut(s) 295
TaqI TCGA 3 cut(s) 346, 404, 414
TasI AATT 2 cut(s) 123, 409
TfiI GAWTC 4 cut(s) 109, 117, 301, 343
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 213
VneI GTGCAC 1 cut(s) 90
XapI RAATTY 1 cut(s) 409
XceI RCATGY 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.