Rmu_sc0000792.1_g000022

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000792.1
OG0017193
Physical Location & Seq
Forward (+)
113384 .. 113857
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000792.1_g000022.1.cds

Sequence Viewer

Length: 474 bp
atgacgaaatttctcctcttcttcctcgctctcatcgtcctcgtttctctctcctcccaaaccgccgacccgaaaacccaaaacccgacccggaccgcatcgccggcccacaccgagctgacacgctacggcttcccaatcgggctcctcccttctccggtcaaaaactacaccgtcaaccccctcaccggcgacttcgtcgtcgacctcggcgacgcgtgcaagatcacgctcccgccggacaactacttggccacgtattccaagaaagtcaccggcaaaatcaaccacggccggatcgccgaaatcaacggcatcagcgtccgggccttctaccagtggtggtcgatcaccggaatcaggtccagcggcgagaatttggtgtttgaggtcggcatggtgacggcgaggtacccctctaagaacttcaatgatagtccggcttgcgagggccgacgccactccgcttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

157

Amino Acids

17.25

Weight (kDa)

9.36

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19590 AT5G19590
fragaria_vesca FvH4_1g05270
malus_domestica MD02G1056100.v1.1 MD15G1188900.v1.1
prunus_persica Prupe.7G227700_v2.0.a1 Prupe.7G227700_v2.0.a1
pyrus_communis pycom02g04510
rosa_chinensis RchiOBHm_Chr2g0090991
rosa_laevigata RLG00000016164
rosa_multiflora Rmu_sc0000792.1_g000022 Rmu_sc0003305.1_g000003
rosa_wichuraiana Rw2G005170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
Acc65I GGTACC 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 411
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 218
AciI CCGC 5 cut(s) 63, 96, 236, 369, 465
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 2 cut(s) 252, 292
AcsI RAATTY 2 cut(s) 8, 376
AcyI GRCGYC 1 cut(s) 457
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 3 cut(s) 157, 188, 360
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 1 cut(s) 430
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
AlwI GGATC 1 cut(s) 305
AoxI GGCC 5 cut(s) 105, 252, 292, 327, 451
ApoI RAATTY 2 cut(s) 8, 376
Asp718I GGTACC 1 cut(s) 411
AspS9I GGNCC 5 cut(s) 93, 106, 327, 363, 451
AsuC2I CCSGG 2 cut(s) 91, 326
AsuHPI GGTGA 4 cut(s) 178, 265, 343, 412
AvaII GGWCC 2 cut(s) 93, 363
BalI TGGCCA 1 cut(s) 254
BanI GGYRCC 1 cut(s) 411
BanII GRGCYC 1 cut(s) 147
BceAI ACGGC 4 cut(s) 145, 307, 328, 420
BcnI CCSGG 2 cut(s) 91, 326
BisI GCNGC 1 cut(s) 370
BlsI GCNGC 1 cut(s) 371
Bme1390I CCNGG 2 cut(s) 91, 326
Bme18I GGWCC 2 cut(s) 93, 363
BmgT120I GGNCC 5 cut(s) 93, 106, 327, 363, 451
BmiI GGNNCC 2 cut(s) 146, 413
BmrFI CCNGG 2 cut(s) 91, 326
BmsI GCATC 2 cut(s) 107, 324
BpuMI CCSGG 2 cut(s) 91, 326
BsaAI YACGTR 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 457
BsaJI CCNNGG 2 cut(s) 208, 289
BsaWI WCCGGW 2 cut(s) 157, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 188, 360
Bse118I RCCGGY 3 cut(s) 103, 188, 275
Bse1I ACTGG 1 cut(s) 337
BseDI CCNNGG 2 cut(s) 208, 289
BseLI CCNNNNNNNGG 3 cut(s) 157, 188, 360
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 3 cut(s) 5, 43, 137
BseX3I CGGCCG 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 5 cut(s) 107, 254, 294, 329, 453
BshNI GGYRCC 1 cut(s) 411
BsiEI CGRYCG 1 cut(s) 295
BslI CCNNNNNNNGG 3 cut(s) 157, 188, 360
BsnI GGCC 5 cut(s) 107, 254, 294, 329, 453
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 3 cut(s) 225, 297, 348
BspACI CCGC 5 cut(s) 63, 96, 236, 369, 465
BspANI GGCC 5 cut(s) 107, 254, 294, 329, 453
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 2 cut(s) 146, 413
BspPI GGATC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 411
BsrFI RCCGGY 3 cut(s) 103, 188, 275
BsrI ACTGG 1 cut(s) 337
BssAI RCCGGY 3 cut(s) 103, 188, 275
BssECI CCNNGG 2 cut(s) 208, 289
BssMI GATC 3 cut(s) 225, 297, 348
BssNI GRCGYC 1 cut(s) 457
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 457
BstBAI YACGTR 1 cut(s) 258
BstC8I GCNNGC 3 cut(s) 105, 220, 445
BstDEI CTNAG 1 cut(s) 420
BstDSI CCRYGG 1 cut(s) 289
BstFNI CGCG 1 cut(s) 218
BstKTI GATC 3 cut(s) 228, 300, 351
BstMBI GATC 3 cut(s) 225, 297, 348
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 104, 219
BstSCI CCNGG 2 cut(s) 89, 324
BstUI CGCG 1 cut(s) 218
BstZI CGGCCG 1 cut(s) 292
BsuRI GGCC 5 cut(s) 107, 254, 294, 329, 453
BtgI CCRYGG 1 cut(s) 289
BtgZI GCGATG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 344
Cac8I GCNNGC 3 cut(s) 105, 220, 445
Cfr10I RCCGGY 3 cut(s) 103, 188, 275
Cfr13I GGNCC 5 cut(s) 93, 106, 327, 363, 451
CpoI CGGWCCG 1 cut(s) 93
CseI GACGC 3 cut(s) 224, 310, 465
Csp6I GTAC 1 cut(s) 412
CspI CGGWCCG 1 cut(s) 93
CviAII CATG 1 cut(s) 397
CviJI RGCY 9 cut(s) 107, 118, 132, 145, 254, 294, 329, 443, 453
CviKI_1 RGCY 9 cut(s) 107, 118, 132, 145, 254, 294, 329, 443, 453
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 1 cut(s) 420
DpnI GATC 3 cut(s) 227, 299, 350
DpnII GATC 3 cut(s) 225, 297, 348
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 2 cut(s) 252, 292
EagI CGGCCG 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
EclXI CGGCCG 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 93, 363
Eco52I CGGCCG 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 147
FaeI CATG 1 cut(s) 400
FaiI YATR 1 cut(s) 398
FatI CATG 1 cut(s) 396
FauI CCCGC 1 cut(s) 243
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 370
GluI GCNGC 1 cut(s) 370
HaeIII GGCC 5 cut(s) 107, 254, 294, 329, 453
HgaI GACGC 3 cut(s) 224, 310, 465
Hin1I GRCGYC 1 cut(s) 457
Hin1II CATG 1 cut(s) 400
HincII GTYRAC 2 cut(s) 178, 205
HindII GTYRAC 2 cut(s) 178, 205
HinfI GANTC 1 cut(s) 357
HphI GGTGA 4 cut(s) 178, 265, 343, 412
Hpy166II GTNNAC 2 cut(s) 178, 205
Hpy8I GTNNAC 2 cut(s) 178, 205
Hpy99I CGWCG 4 cut(s) 203, 206, 218, 459
HpyAV CCTTC 2 cut(s) 162, 340
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 219
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 1 cut(s) 257
Hsp92I GRCGYC 1 cut(s) 457
Hsp92II CATG 1 cut(s) 400
KpnI GGTACC 1 cut(s) 415
KroI GCCGGC 1 cut(s) 103
KroNI GCCGGC 1 cut(s) 105
Kzo9I GATC 3 cut(s) 225, 297, 348
LmnI GCTCC 2 cut(s) 150, 237
LweI GCATC 2 cut(s) 107, 324
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 2 cut(s) 271, 400
MalI GATC 3 cut(s) 227, 299, 350
MboI GATC 3 cut(s) 225, 297, 348
MboII GAAGA 2 cut(s) 10, 13
MhlI GDGCHC 1 cut(s) 147
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 2 cut(s) 8, 376
MluI ACGCGT 1 cut(s) 216
MluNI TGGCCA 1 cut(s) 254
Mox20I TGGCCA 1 cut(s) 254
MroNI GCCGGC 1 cut(s) 103
MscI TGGCCA 1 cut(s) 254
MseI TTAA 1 cut(s) 472
Msp20I TGGCCA 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 369
MspR9I CCNGG 2 cut(s) 91, 326
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 104, 219
NaeI GCCGGC 1 cut(s) 105
NciI CCSGG 2 cut(s) 91, 326
NdeII GATC 3 cut(s) 225, 297, 348
NgoMIV GCCGGC 1 cut(s) 103
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 2 cut(s) 146, 413
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 271, 400
PcsI WCGNNNNNNNCGW 3 cut(s) 33, 210, 318
PdiI GCCGGC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 357
PflFI GACNNNGTC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 371
Ppu21I YACGTR 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 146, 413
PspPI GGNCC 5 cut(s) 93, 106, 327, 363, 451
PsyI GACNNNGTC 1 cut(s) 197
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
Rsr2I CGGWCCG 1 cut(s) 93
RsrII CGGWCCG 1 cut(s) 93
SalI GTCGAC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 472
SatI GCNGC 1 cut(s) 370
Sau3AI GATC 3 cut(s) 225, 297, 348
Sau96I GGNCC 5 cut(s) 93, 106, 327, 363, 451
ScrFI CCNGG 2 cut(s) 91, 326
SduI GDGCHC 1 cut(s) 147
SetI ASST 6 cut(s) 120, 210, 260, 365, 393, 413
SfaNI GCATC 2 cut(s) 107, 324
SgrAI CRCCGGYG 1 cut(s) 188
SinI GGWCC 2 cut(s) 93, 363
Sse9I AATT 2 cut(s) 8, 376
SsiI CCGC 5 cut(s) 63, 96, 236, 369, 465
StyD4I CCNGG 2 cut(s) 89, 324
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 260
TaqI TCGA 2 cut(s) 204, 347
TasI AATT 2 cut(s) 8, 376
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 1 cut(s) 357
Tru1I TTAA 1 cut(s) 472
Tru9I TTAA 1 cut(s) 472
TscAI CASTG 1 cut(s) 344
TseFI GTSAC 2 cut(s) 271, 400
Tsp45I GTSAC 2 cut(s) 271, 400
TspRI CASTG 1 cut(s) 344
Tth111I GACNNNGTC 1 cut(s) 197
VpaK11BI GGWCC 2 cut(s) 93, 363
XapI RAATTY 2 cut(s) 8, 376
XmiI GTMKAC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.