AT5G19855

RbcX protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012256
Physical Location & Seq
Reverse (-)
6711943 .. 6713937
1995 bp
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UTR
Exon/CDS
Intron
AT5G19855.1

Sequence Viewer

Length: 612 bp
ATGGTGAGTGCTTGGTTTGTTGTTGGCTCACCGGTGATGGACTCTTCGAGCAGTCCATGTTTATGTCTGGATGCTCACACGACGGGTACCATCAGGAGGAAGAAGATCCTTGGCAAAGCAAGAAATCTGGAATTAGGAAGCTCTTTCACTGGCTCACGCATTGTTTTTAGGCTTTCTCCGAAGCGTGTATCGAGAATTGCGAATCGAAAGAGCAAAAAGCTCTTGATTGTGAATGAGGATGTTGCTGGTAATTACGACGATACCTTCGGTGATGTACAAAAGCAAATTGTTAATTATTTTACATACAAAGCTGTGAGGACGGTTCTTCATCAGCTGTACGAAATGAATCCTCCTCAATACACTTGGTTCTATAATCATATCATAACAAACAGACCGACGGATGGCAAACGTTTCCTCCGTGCCCTCGGCAAGGAGAGTCAGGAGCTTGCAGAAAGAGTGATGATCACGCGTCTTCACTTGTATGGCAAATGGATCAAGAAATGCGACCATGGGAAGATATACCAGGAAATATCGGATGAAAACTTGGCGTTGATGCGTGAACGCCTGATGGAGACCGTGATATGGCCTTCCGATGACACAAACTCAAGGTAA

Protein Analysis

203

Amino Acids

23.48

Weight (kDa)

9.68

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RbcX PF02341 91 - 192 1.8e-18 RbcX protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012256)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19855 AT5G19855
fragaria_vesca FvH4_3g28850
malus_domestica MD03G1175000.v1.1 MD11G1193100.v1.1
prunus_persica Prupe.4G249500_v2.0.a1 Prupe.4G249500_v2.0.a1
pyrus_communis pycom03g13250 pycom11g16860
rosa_chinensis RchiOBHm_Chr5g0052051
rosa_laevigata RLG00000034846
rosa_multiflora Rmu_ssc0000098.1_g000001
rosa_roxburghii Rroxscaffold_1G00027850
rosa_rugosa Rorug05G0275200
rosa_samantha Rh5AG347200 Rh5BG358100 Rh5CG383600 Rh5DG373600
rosa_wichuraiana Rw5G032810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 86
AccII CGCG 1 cut(s) 469
AclI AACGTT 1 cut(s) 409
AclWI GGATC 2 cut(s) 100, 500
AfaI GTAC 3 cut(s) 88, 276, 338
AfiI CCNNNNNNNGG 4 cut(s) 96, 401, 430, 582
AflIII ACRYGT 1 cut(s) 467
AgeI ACCGGT 1 cut(s) 31
AjnI CCWGG 1 cut(s) 522
AluBI AGCT 5 cut(s) 141, 220, 311, 334, 445
AluI AGCT 5 cut(s) 141, 220, 311, 334, 445
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 2 cut(s) 100, 500
AoxI GGCC 1 cut(s) 584
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AsiGI ACCGGT 1 cut(s) 31
Asp718I GGTACC 1 cut(s) 86
AsuHPI GGTGA 4 cut(s) 16, 21, 46, 281
BaeGI GKGCMC 1 cut(s) 424
BanI GGYRCC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 464
BccI CCATC 4 cut(s) 31, 98, 395, 562
BciT130I CCWGG 1 cut(s) 524
BclI TGATCA 1 cut(s) 462
BcoDI GTCTC 1 cut(s) 566
Bme1390I CCNGG 1 cut(s) 524
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 524
BmsI GCATC 2 cut(s) 61, 543
BpiI GAAGAC 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 589
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 3 cut(s) 109, 424, 508
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 4 cut(s) 96, 401, 430, 582
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 154
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 3 cut(s) 109, 424, 508
BseGI GGATG 4 cut(s) 76, 244, 406, 541
BseLI CCNNNNNNNGG 4 cut(s) 96, 401, 430, 582
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 342
BseSI GKGCMC 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 469
BshFI GGCC 1 cut(s) 586
BshNI GGYRCC 1 cut(s) 86
BshTI ACCGGT 1 cut(s) 31
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 4 cut(s) 96, 401, 430, 582
BsmAI GTCTC 1 cut(s) 566
BsnI GGCC 1 cut(s) 586
Bso31I GGTCTC 1 cut(s) 566
Bsp1286I GDGCHC 1 cut(s) 424
Bsp1407I TGTACA 1 cut(s) 274
Bsp143I GATC 3 cut(s) 105, 462, 492
Bsp19I CCATGG 1 cut(s) 508
BspANI GGCC 1 cut(s) 586
BspFNI CGCG 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 2 cut(s) 100, 500
BspT107I GGYRCC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 566
BsrFI RCCGGY 1 cut(s) 31
BsrGI TGTACA 1 cut(s) 274
BsrI ACTGG 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 3 cut(s) 109, 424, 508
BssMI GATC 3 cut(s) 105, 462, 492
BssT1I CCWWGG 2 cut(s) 109, 508
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 2 cut(s) 322, 577
Bst6I CTCTTC 1 cut(s) 49
BstAUI TGTACA 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 447
BstDSI CCRYGG 1 cut(s) 508
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 4 cut(s) 76, 244, 406, 541
BstFNI CGCG 1 cut(s) 469
BstKTI GATC 3 cut(s) 108, 465, 495
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 3 cut(s) 105, 462, 492
BstNI CCWGG 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 522
BstSLI GKGCMC 1 cut(s) 424
BstUI CGCG 1 cut(s) 469
BstV2I GAAGAC 1 cut(s) 464
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 1 cut(s) 586
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 4 cut(s) 76, 244, 406, 541
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 447
Cfr10I RCCGGY 1 cut(s) 31
CseI GACGC 1 cut(s) 458
Csp6I GTAC 3 cut(s) 87, 275, 337
CspAI ACCGGT 1 cut(s) 31
CviAII CATG 2 cut(s) 57, 509
CviJI RGCY 9 cut(s) 27, 141, 153, 172, 220, 311, 334, 445, 586
CviKI_1 RGCY 9 cut(s) 27, 141, 153, 172, 220, 311, 334, 445, 586
CviQI GTAC 3 cut(s) 87, 275, 337
DpnI GATC 3 cut(s) 107, 464, 494
DpnII GATC 3 cut(s) 105, 462, 492
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco130I CCWWGG 2 cut(s) 109, 508
Eco31I GGTCTC 1 cut(s) 566
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 522
EcoT14I CCWWGG 2 cut(s) 109, 508
ErhI CCWWGG 2 cut(s) 109, 508
FaeI CATG 2 cut(s) 60, 512
FatI CATG 2 cut(s) 56, 508
FbaI TGATCA 1 cut(s) 462
FokI GGATG 4 cut(s) 83, 251, 413, 548
HaeIII GGCC 1 cut(s) 586
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 458
Hin1II CATG 2 cut(s) 60, 512
HinfI GANTC 4 cut(s) 41, 202, 346, 436
HpaII CCGG 1 cut(s) 32
HphI GGTGA 4 cut(s) 16, 21, 46, 281
Hpy166II GTNNAC 1 cut(s) 560
Hpy188I TCNGA 3 cut(s) 180, 535, 592
Hpy188III TCNNGA 7 cut(s) 68, 94, 128, 192, 223, 440, 496
Hpy8I GTNNAC 1 cut(s) 560
Hpy99I CGWCG 3 cut(s) 85, 260, 400
HpyAV CCTTC 2 cut(s) 274, 597
HpyCH4III ACNGT 2 cut(s) 322, 577
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 1 cut(s) 449
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 2 cut(s) 60, 512
KpnI GGTACC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 462
Kzo9I GATC 3 cut(s) 105, 462, 492
LmnI GCTCC 1 cut(s) 442
LweI GCATC 2 cut(s) 61, 543
MaeII ACGT 1 cut(s) 409
MalI GATC 3 cut(s) 107, 464, 494
MboI GATC 3 cut(s) 105, 462, 492
MboII GAAGA 6 cut(s) 36, 112, 115, 317, 464, 526
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 5 cut(s) 131, 195, 250, 285, 292
MluI ACGCGT 1 cut(s) 467
MlyI GAGTC 2 cut(s) 35, 445
MnlI CCTC 7 cut(s) 90, 229, 309, 360, 363, 425, 434
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 2 cut(s) 61, 480
MspA1I CMGCKG 1 cut(s) 334
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 524
MvaI CCWGG 1 cut(s) 524
MvnI CGCG 1 cut(s) 469
NcoI CCATGG 1 cut(s) 508
NdeII GATC 3 cut(s) 105, 462, 492
NlaIII CATG 2 cut(s) 60, 512
NlaIV GGNNCC 1 cut(s) 88
NmeAIII GCCGAG 1 cut(s) 405
PcsI WCGNNNNNNNCGW 2 cut(s) 197, 415
PfeI GAWTC 2 cut(s) 202, 346
PinAI ACCGGT 1 cut(s) 31
PleI GAGTC 2 cut(s) 35, 444
PpsI GAGTC 2 cut(s) 35, 444
Psp1406I AACGTT 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 522
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 88
PsuI RGATCY 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 334
RsaI GTAC 3 cut(s) 88, 276, 338
RsaNI GTAC 3 cut(s) 87, 275, 337
RseI CAYNNNNRTG 2 cut(s) 61, 480
SaqAI TTAA 1 cut(s) 291
Sau3AI GATC 3 cut(s) 105, 462, 492
SchI GAGTC 2 cut(s) 35, 445
ScrFI CCNGG 1 cut(s) 524
SduI GDGCHC 1 cut(s) 424
SetI ASST 8 cut(s) 143, 222, 266, 313, 336, 412, 447, 611
SfaNI GCATC 2 cut(s) 61, 543
SgrAI CRCCGGYG 1 cut(s) 31
SmiMI CAYNNNNRTG 2 cut(s) 61, 480
SmlI CTYRAG 1 cut(s) 604
SmoI CTYRAG 1 cut(s) 604
Sse9I AATT 5 cut(s) 131, 195, 250, 285, 292
StyD4I CCNGG 1 cut(s) 522
StyI CCWWGG 2 cut(s) 109, 508
TaaI ACNGT 2 cut(s) 322, 577
TaiI ACGT 1 cut(s) 412
TaqI TCGA 3 cut(s) 47, 191, 205
TaqII GACCGA 1 cut(s) 409
TasI AATT 5 cut(s) 131, 195, 250, 285, 292
TatI WGTACW 1 cut(s) 274
TfiI GAWTC 2 cut(s) 202, 346
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 154
TspDTI ATGAA 3 cut(s) 317, 359, 552
TspGWI ACGGA 2 cut(s) 407, 413
TspRI CASTG 1 cut(s) 154
XagI CCTNNNNNAGG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.