Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012256

Physical Location & Seq

Genomic Coordinates Reverse (-)

31084830 .. 31085541

Gene Structure 712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0275200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCCCCTGATGAAGAACCTCACATTTAACATAATATCCTCTCTACTTTTTGGGCTTGAACGAGGAACTCGCAGAGATGAATTCGTGGAGTGTTTCCAAAAAATGATGCAAGGATTGTGGTCAGTGCCGGTTAACTTGCCCTTCACGTGTTACAACAGCGGCCTCAAGGCAAGCAAGAGGGTTCAAAACATGCTCAAACAACTTATACGCGAAAAGAGGGTACAGCTTGAGCAAAAAAGGGTTTCTCCACAACAAGACCTCATCACTTGCTTCCTTAGCATCCGAAATGATGAAGGTAAAGAAGAATTAACGGAATTGGAGATGGTGCACAATGTCATGGTAGTCATGGTTGCAGGACATGACACTTCATCTGTTCTGATTACGTTCCTTTTGCTGCTTCTCGCTAATGAACCAGCTGTTTATGCTGCCCTTCTTCAAGAGCAGGAAGAAATTGCTAGAAGCAAATCGGCAGGAGAGTTTCTAACATGGGAAGGCCTTGCCAAAATGAAATACACATGGAAAGTAGCACTGGAAACTCTGAGGATGACTCCTCATGTCTTTGGTGGCTCTAGGACTGCTGTCAAAGATGTGGATTCCACATTCCTAAAGGGTGGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0061077

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RcbX

Protein Analysis

206

Amino Acids

23.43

Weight (kDa)

8.74

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 197	4.8e-29	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19855 AT5G19855
fragaria_vesca	FvH4_3g28850
malus_domestica	MD03G1175000.v1.1 MD11G1193100.v1.1
prunus_persica	Prupe.4G249500_v2.0.a1 Prupe.4G249500_v2.0.a1
pyrus_communis	pycom03g13250 pycom11g16860
rosa_chinensis	RchiOBHm_Chr5g0052051
rosa_laevigata	RLG00000034846
rosa_multiflora	Rmu_ssc0000098.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027850
rosa_rugosa	Rorug05G0275200
rosa_samantha	Rh5AG347200 Rh5BG358100 Rh5CG383600 Rh5DG373600
rosa_wichuraiana	Rw5G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	210
AciI	CCGC	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	80
AcvI	CACGTG	1 cut(s)	147
AfaI	GTAC	1 cut(s)	222
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	59, 185, 437
AluBI	AGCT	2 cut(s)	226, 416
AluI	AGCT	2 cut(s)	226, 416
Alw21I	GWGCWC	1 cut(s)	330
Alw44I	GTGCAC	1 cut(s)	326
AoxI	GGCC	2 cut(s)	160, 493
ApaLI	GTGCAC	1 cut(s)	326
ApeKI	GCWGC	2 cut(s)	394, 425
ApoI	RAATTY	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	330
BbrPI	CACGTG	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	381, 412
BccI	CCATC	1 cut(s)	316
BfaI	CTAG	2 cut(s)	456, 570
BisI	GCNGC	3 cut(s)	160, 395, 426
BlsI	GCNGC	3 cut(s)	161, 396, 427
BmsI	GCATC	2 cut(s)	96, 288
BoxI	GACNNNNGTC	1 cut(s)	578
BplI	GAGNNNNNCTC	2 cut(s)	532, 564
Bpu10I	CCTNAGC	1 cut(s)	275
BpuEI	CTTGAG	2 cut(s)	149, 248
BsaAI	YACGTR	1 cut(s)	147
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	534
BseGI	GGATG	2 cut(s)	279, 549
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	540
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	381, 412
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	162, 495
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	128
BsnI	GGCC	2 cut(s)	162, 495
Bsp1286I	GDGCHC	1 cut(s)	330
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	2 cut(s)	162, 495
BspCNI	CTCAG	1 cut(s)	531
BspFNI	CGCG	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	534
BssAI	RCCGGY	1 cut(s)	127
BstBAI	YACGTR	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	275, 539
BstF5I	GGATG	2 cut(s)	279, 549
BstFNI	CGCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 422
BstNSI	RCATGY	1 cut(s)	193
BstPAI	GACNNNNGTC	1 cut(s)	578
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	381, 412
BsuRI	GGCC	2 cut(s)	162, 495
BtsCI	GGATG	2 cut(s)	279, 549
BtsIMutI	CAGTG	2 cut(s)	129, 527
Cac8I	GCNNGC	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	221
CspCI	CAANNNNNGTGG	2 cut(s)	98, 133
CviAII	CATG	7 cut(s)	190, 337, 346, 359, 486, 516, 554
CviJI	RGCY	6 cut(s)	55, 162, 226, 416, 495, 567
CviKI_1	RGCY	6 cut(s)	55, 162, 226, 416, 495, 567
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	275, 539
Eco147I	AGGCCT	1 cut(s)	495
Eco72I	CACGTG	1 cut(s)	147
EcoRI	GAATTC	1 cut(s)	80
FaeI	CATG	7 cut(s)	193, 340, 349, 362, 489, 519, 557
FatI	CATG	7 cut(s)	189, 336, 345, 358, 485, 515, 553
Fnu4HI	GCNGC	3 cut(s)	160, 395, 426
FokI	GGATG	2 cut(s)	266, 556
Fsp4HI	GCNGC	3 cut(s)	160, 395, 426
FspBI	CTAG	2 cut(s)	456, 570
GluI	GCNGC	3 cut(s)	160, 395, 426
HaeIII	GGCC	2 cut(s)	162, 495
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	7 cut(s)	193, 340, 349, 362, 489, 519, 557
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	547, 593
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	128
Hpy166II	GTNNAC	2 cut(s)	133, 328
Hpy188I	TCNGA	3 cut(s)	284, 378, 540
Hpy188III	TCNNGA	1 cut(s)	437
Hpy8I	GTNNAC	2 cut(s)	133, 328
HpyAV	CCTTC	4 cut(s)	151, 287, 440, 485
HpyCH4IV	ACGT	2 cut(s)	146, 383
HpyCH4V	TGCA	3 cut(s)	109, 328, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 422
HpyF3I	CTNAG	2 cut(s)	275, 539
HpySE526I	ACGT	2 cut(s)	146, 383
Hsp92II	CATG	7 cut(s)	193, 340, 349, 362, 489, 519, 557
KspAI	GTTAAC	1 cut(s)	133
LpnPI	CCDG	7 cut(s)	20, 141, 339, 426, 428, 456, 515
Lsp1109I	GCAGC	2 cut(s)	381, 412
LweI	GCATC	2 cut(s)	96, 288
MaeI	CTAG	2 cut(s)	456, 570
MaeII	ACGT	2 cut(s)	146, 383
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	4 cut(s)	25, 314, 425, 458
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	4 cut(s)	80, 305, 314, 450
MlyI	GAGTC	1 cut(s)	541
MnlI	CCTC	9 cut(s)	29, 49, 56, 171, 173, 210, 269, 534, 561
MseI	TTAA	3 cut(s)	27, 132, 308
MspA1I	CMGCKG	2 cut(s)	159, 416
MspI	CCGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	276, 422
NlaIII	CATG	7 cut(s)	193, 340, 349, 362, 489, 519, 557
NspI	RCATGY	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	593
PkrI	GCNGC	3 cut(s)	161, 396, 427
PleI	GAGTC	1 cut(s)	541
PmaCI	CACGTG	1 cut(s)	147
PmlI	CACGTG	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	541
Ppu21I	YACGTR	1 cut(s)	147
PshAI	GACNNNNGTC	1 cut(s)	578
PspCI	CACGTG	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	3 cut(s)	27, 132, 308
SatI	GCNGC	3 cut(s)	160, 395, 426
SchI	GAGTC	1 cut(s)	541
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	7 cut(s)	21, 149, 228, 261, 298, 386, 418
SfaNI	GCATC	2 cut(s)	96, 288
SmlI	CTYRAG	2 cut(s)	164, 227
SmoI	CTYRAG	2 cut(s)	164, 227
Sse9I	AATT	4 cut(s)	80, 305, 314, 450
SseBI	AGGCCT	1 cut(s)	495
SsiI	CCGC	1 cut(s)	159
SspMI	CTAG	2 cut(s)	456, 570
StuI	AGGCCT	1 cut(s)	495
TaiI	ACGT	2 cut(s)	149, 386
TasI	AATT	4 cut(s)	80, 305, 314, 450
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	3 cut(s)	27, 132, 308
Tru9I	TTAA	3 cut(s)	27, 132, 308
TscAI	CASTG	2 cut(s)	129, 534
TseI	GCWGC	2 cut(s)	394, 425
TspDTI	ATGAA	6 cut(s)	26, 93, 306, 357, 423, 521
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	2 cut(s)	129, 534
VneI	GTGCAC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	80
XceI	RCATGY	1 cut(s)	193
XspI	CTAG	2 cut(s)	456, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.