Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012256

Physical Location & Seq

Genomic Coordinates Reverse (-)

16671768 .. 16675615

Gene Structure 3848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G249500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTAGGGGCTTTGTCTGTGGTGGGTTCGTCAGTCGTGGACTCGCATACTTCTCCATGCTTGTGTTTGGATGCACTGCCTACAACTGCTATGAATCTCAAGAGTGGAGGAGAATTGGTTTTGCAAAGGAATTCAATGGCCAAGAAGCGTTTGGTGAAACCGGGTTCCTTGGAATTGAGCAGTTCATTTATTGATTCTGGGCATGACATGCGGCTCTCAATGAAAGCTCTTCCGGGTATTATTGTCAATAAGAGTATGAGGAAAAGAAAGAATAGGGGTTTCGTGATTGTTAATGAACTTGGCGGGCAATATGAAGACAGTTTTGAGGATGTTAAGGCGCAAATGCTCAACTATTTTACGTACAAGGCTGTGAGGACTGTTATGAGCCAGCTCTATGAGATGAACCCAACACAATATAGATGGTTTTATGACTTTGTTGCAACACACAAGCCTGGAGATGGGAAGCGATTCATCCGTACCCTCGGGAAGGAGAGGCATGAACTTGCTGAGAGAGTAATGGTCACACGACTTCACCTCTATGGTAAATGGGTCAAGAAATGCAATCATGCTGAAATATATCAACAAATCTCTGATCAGAACTTGGAGTTGATGCGTGAACGGCTTATCGAGACTGTGATATGGCCCTCTGATGACAACACGGAGAAGATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0061077

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RcbX

Protein Analysis

225

Amino Acids

25.58

Weight (kDa)

9.28

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19855 AT5G19855
fragaria_vesca	FvH4_3g28850
malus_domestica	MD03G1175000.v1.1 MD11G1193100.v1.1
prunus_persica	Prupe.4G249500_v2.0.a1 Prupe.4G249500_v2.0.a1
pyrus_communis	pycom03g13250 pycom11g16860
rosa_chinensis	RchiOBHm_Chr5g0052051
rosa_laevigata	RLG00000034846
rosa_multiflora	Rmu_ssc0000098.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027850
rosa_rugosa	Rorug05G0275200
rosa_samantha	Rh5AG347200 Rh5BG358100 Rh5CG383600 Rh5DG373600
rosa_wichuraiana	Rw5G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	211, 303
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	2 cut(s)	362, 478
AfiI	CCNNNNNNNGG	2 cut(s)	458, 487
AgsI	TTSAA	1 cut(s)	135
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	2 cut(s)	227, 391
AluI	AGCT	2 cut(s)	227, 391
Alw26I	GTCTC	1 cut(s)	623
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	2 cut(s)	138, 641
ApoI	RAATTY	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	642
AsuC2I	CCSGG	2 cut(s)	162, 234
AsuHPI	GGTGA	2 cut(s)	166, 524
AvaI	CYCGRG	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	321
BccI	CCATC	2 cut(s)	414, 452
BceAI	ACGGC	1 cut(s)	635
BciT130I	CCWGG	1 cut(s)	453
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	2 cut(s)	162, 234
BcoDI	GTCTC	1 cut(s)	623
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	3 cut(s)	162, 234, 453
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	642
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	3 cut(s)	162, 234, 453
BmsI	GCATC	2 cut(s)	61, 600
BpiI	GAAGAC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	2 cut(s)	162, 234
BsaAI	YACGTR	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	168, 481
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 487
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	168, 481
BseGI	GGATG	3 cut(s)	76, 334, 471
BseLI	CCNNNNNNNGG	2 cut(s)	458, 487
BseMII	CTCAG	1 cut(s)	498
BseRI	GAGGAG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	140, 643
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	161, 233
BslI	CCNNNNNNNGG	2 cut(s)	458, 487
BsmAI	GTCTC	1 cut(s)	623
BsnI	GGCC	2 cut(s)	140, 643
BsoBI	CYCGRG	1 cut(s)	482
Bsp143I	GATC	1 cut(s)	592
BspACI	CCGC	2 cut(s)	211, 303
BspANI	GGCC	2 cut(s)	140, 643
BspCNI	CTCAG	1 cut(s)	499
BspLI	GGNNCC	1 cut(s)	166
BspQI	GCTCTTC	1 cut(s)	234
BssECI	CCNNGG	2 cut(s)	168, 481
BssMI	GATC	1 cut(s)	592
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	3 cut(s)	320, 379, 634
Bst6I	CTCTTC	1 cut(s)	234
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	305, 389
BstDEI	CTNAG	1 cut(s)	507
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	3 cut(s)	76, 334, 471
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	1 cut(s)	595
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	1 cut(s)	592
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 619
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	3 cut(s)	160, 232, 451
BstSNI	TACGTA	1 cut(s)	360
BstV2I	GAAGAC	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	140, 643
BtsCI	GGATG	3 cut(s)	76, 334, 471
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	2 cut(s)	305, 389
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	642
Csp6I	GTAC	2 cut(s)	361, 477
CviAII	CATG	5 cut(s)	57, 203, 208, 497, 566
CviQI	GTAC	2 cut(s)	361, 477
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	1 cut(s)	594
DpnII	GATC	1 cut(s)	592
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco105I	TACGTA	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	482
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoRI	GAATTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	5 cut(s)	60, 206, 211, 500, 569
FatI	CATG	5 cut(s)	56, 202, 207, 496, 565
FauI	CCCGC	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	3 cut(s)	83, 341, 458
Fsp4HI	GCNGC	1 cut(s)	212
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	140, 643
HapII	CCGG	2 cut(s)	161, 233
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	5 cut(s)	60, 206, 211, 500, 569
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HinfI	GANTC	4 cut(s)	41, 94, 194, 468
HpaII	CCGG	2 cut(s)	161, 233
HphI	GGTGA	2 cut(s)	166, 524
Hpy166II	GTNNAC	2 cut(s)	40, 617
Hpy188I	TCNGA	3 cut(s)	592, 597, 649
Hpy188III	TCNNGA	5 cut(s)	100, 283, 484, 553, 628
Hpy8I	GTNNAC	2 cut(s)	40, 617
HpyAV	CCTTC	1 cut(s)	481
HpyCH4III	ACNGT	3 cut(s)	320, 379, 634
HpyCH4IV	ACGT	1 cut(s)	359
HpyCH4V	TGCA	4 cut(s)	74, 124, 440, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 619
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	1 cut(s)	359
Hsp92II	CATG	5 cut(s)	60, 206, 211, 500, 569
HspAI	GCGC	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	1 cut(s)	592
LguI	GCTCTTC	1 cut(s)	234
LpnPI	CCDG	6 cut(s)	174, 183, 246, 401, 438, 465
LweI	GCATC	2 cut(s)	61, 600
MaeII	ACGT	1 cut(s)	359
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	1 cut(s)	594
MboI	GATC	1 cut(s)	592
MboII	GAAGA	2 cut(s)	221, 326
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	3 cut(s)	113, 130, 173
MluNI	TGGCCA	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	8 cut(s)	101, 252, 319, 366, 486, 491, 545, 655
Mox20I	TGGCCA	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	2 cut(s)	291, 333
MslI	CAYNNNNRTG	2 cut(s)	61, 537
Msp20I	TGGCCA	1 cut(s)	140
MspI	CCGG	2 cut(s)	161, 233
MspR9I	CCNGG	3 cut(s)	162, 234, 453
MvaI	CCWGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	208, 619
NciI	CCSGG	2 cut(s)	162, 234
NdeII	GATC	1 cut(s)	592
NlaIII	CATG	5 cut(s)	60, 206, 211, 500, 569
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	520
NspI	RCATGY	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	3 cut(s)	94, 194, 468
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	642
RsaI	GTAC	2 cut(s)	362, 478
RsaNI	GTAC	2 cut(s)	361, 477
RseI	CAYNNNNRTG	2 cut(s)	61, 537
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	291, 333
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	1 cut(s)	592
Sau96I	GGNCC	1 cut(s)	642
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	3 cut(s)	162, 234, 453
SetI	ASST	4 cut(s)	229, 362, 393, 537
SfaNI	GCATC	2 cut(s)	61, 600
SmiMI	CAYNNNNRTG	2 cut(s)	61, 537
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SnaBI	TACGTA	1 cut(s)	360
Sse9I	AATT	3 cut(s)	113, 130, 173
SsiI	CCGC	2 cut(s)	211, 303
StyD4I	CCNGG	3 cut(s)	160, 232, 451
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	320, 379, 634
TaiI	ACGT	1 cut(s)	362
TaqI	TCGA	1 cut(s)	627
TasI	AATT	3 cut(s)	113, 130, 173
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	3 cut(s)	94, 194, 468
Tru1I	TTAA	2 cut(s)	291, 333
Tru9I	TTAA	2 cut(s)	291, 333
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	520
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	8 cut(s)	107, 174, 236, 309, 327, 416, 460, 513
TspGWI	ACGGA	2 cut(s)	464, 674
TspRI	CASTG	1 cut(s)	81
XagI	CCTNNNNNAGG	1 cut(s)	485
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.