Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012256

Physical Location & Seq

Genomic Coordinates Reverse (-)

53625064 .. 53628384

Gene Structure 3321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32948

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTGGGGGCTTTATCTGTGATGGGTTCATCCGTGGTGGACTCACACACATGTCCGTGCTTGTGCTTGGATGCTCTGCCTACAACTGCCATGAATCTCAAGAGTGGAGGAGAACAGAGGAACTCAATGGCCAAGAAGCATTTAGTGAAACCAGGAGGGTCTTTGGAGTTGAGCAGTTCATTCATTGATTCAGGCCATGACAGGTGGCTCTCCATGAAAGCTCTTCCGGGTATGAGGAGGAAACGAAAGAATCGAAACTTCGTGATTGTTAATGAGCTTGCAGGCCAATATGAGGACAGCTTTGAGGATGTTAAGACGCAATTACTCAACTATTTTACATACAAGGCTGTGAGGACTGTCATGAACCAGCTTTATGAGATGAACCCAACACAATATAGGTGGTTGTATGACTTTGTTGTATCAAACAAGCCTGGAGATGGTAAGCGGTTCCTCCGCTCACTTGGGAAGGAGAGGCATGAACTTGCTGAGAGAGTAATGGTCACGCGGCTTCACCTCTATGGTAAATGGGTAAAGAAATGTAACCATGCTGAAATATATCAAGAAATCTCTAATGAGAACTTGGAGTTGATGCGTGAACGGCTTTTTGAGACTGTGATATGGCCCTCAGATGACTCAAACACAGAGAAGATTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0061077

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RcbX

Protein Analysis

218

Amino Acids

25.07

Weight (kDa)

8.97

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RbcX	PF02341	104 - 202	6e-19	RbcX protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0012256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19855 AT5G19855
fragaria_vesca	FvH4_3g28850
malus_domestica	MD03G1175000.v1.1 MD11G1193100.v1.1
prunus_persica	Prupe.4G249500_v2.0.a1 Prupe.4G249500_v2.0.a1
pyrus_communis	pycom03g13250 pycom11g16860
rosa_chinensis	RchiOBHm_Chr5g0052051
rosa_laevigata	RLG00000034846
rosa_multiflora	Rmu_ssc0000098.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027850
rosa_rugosa	Rorug05G0275200
rosa_samantha	Rh5AG347200 Rh5BG358100 Rh5CG383600 Rh5DG373600
rosa_wichuraiana	Rw5G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	456
AccII	CGCG	1 cut(s)	505
AciI	CCGC	3 cut(s)	445, 454, 505
AcoI	YGGCCR	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	292, 437
AflIII	ACRYGT	1 cut(s)	50
AjnI	CCWGG	2 cut(s)	151, 430
AluBI	AGCT	4 cut(s)	221, 277, 300, 370
AluI	AGCT	4 cut(s)	221, 277, 300, 370
Alw26I	GTCTC	1 cut(s)	602
AoxI	GGCC	4 cut(s)	129, 193, 283, 620
AspS9I	GGNCC	1 cut(s)	621
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	503
BalI	TGGCCA	1 cut(s)	131
BccI	CCATC	2 cut(s)	16, 431
BceAI	ACGGC	1 cut(s)	614
BciT130I	CCWGG	2 cut(s)	153, 432
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	602
BisI	GCNGC	1 cut(s)	506
BlsI	GCNGC	1 cut(s)	507
Bme1390I	CCNGG	3 cut(s)	153, 228, 432
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	1 cut(s)	449
BmrFI	CCNGG	3 cut(s)	153, 228, 432
BmsI	GCATC	2 cut(s)	61, 579
BpmI	CTGGAG	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 437
BseBI	CCWGG	2 cut(s)	153, 432
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	3 cut(s)	29, 76, 313
BseLI	CCNNNNNNNGG	2 cut(s)	292, 437
BseMII	CTCAG	2 cut(s)	477, 639
BseRI	GAGGAG	2 cut(s)	123, 250
Bsh1236I	CGCG	1 cut(s)	505
BshFI	GGCC	4 cut(s)	131, 195, 285, 622
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	292, 437
BsmAI	GTCTC	1 cut(s)	602
BsnI	GGCC	4 cut(s)	131, 195, 285, 622
BspACI	CCGC	3 cut(s)	445, 454, 505
BspANI	GGCC	4 cut(s)	131, 195, 285, 622
BspCNI	CTCAG	2 cut(s)	478, 638
BspFNI	CGCG	1 cut(s)	505
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	449
BspQI	GCTCTTC	1 cut(s)	228
BsrBI	CCGCTC	1 cut(s)	456
BssECI	CCNNGG	1 cut(s)	33
Bst2UI	CCWGG	2 cut(s)	153, 432
Bst4CI	ACNGT	2 cut(s)	358, 613
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	279, 283
BstDEI	CTNAG	2 cut(s)	486, 625
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	3 cut(s)	29, 76, 313
BstFNI	CGCG	1 cut(s)	505
BstMAI	GTCTC	1 cut(s)	602
BstMWI	GCNNNNNNNGC	1 cut(s)	598
BstNI	CCWGG	2 cut(s)	153, 432
BstNSI	RCATGY	1 cut(s)	54
BstSCI	CCNGG	3 cut(s)	151, 226, 430
BstUI	CGCG	1 cut(s)	505
BsuRI	GGCC	4 cut(s)	131, 195, 285, 622
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	29, 76, 313
Cac8I	GCNNGC	2 cut(s)	279, 283
CciI	TCATGA	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	621
CseI	GACGC	1 cut(s)	325
CspCI	CAANNNNNGTGG	2 cut(s)	380, 415
CviAII	CATG	7 cut(s)	51, 91, 197, 214, 361, 476, 545
DdeI	CTNAG	2 cut(s)	486, 625
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EcoRII	CCWGG	2 cut(s)	151, 430
FaeI	CATG	7 cut(s)	54, 94, 200, 217, 364, 479, 548
FatI	CATG	7 cut(s)	50, 90, 196, 213, 360, 475, 544
Fnu4HI	GCNGC	1 cut(s)	506
FokI	GGATG	3 cut(s)	16, 83, 320
Fsp4HI	GCNGC	1 cut(s)	506
GluI	GCNGC	1 cut(s)	506
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	4 cut(s)	131, 195, 285, 622
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	325
Hin1II	CATG	7 cut(s)	54, 94, 200, 217, 364, 479, 548
HinfI	GANTC	5 cut(s)	41, 94, 188, 250, 632
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	2 cut(s)	40, 596
Hpy188I	TCNGA	1 cut(s)	628
Hpy188III	TCNNGA	4 cut(s)	100, 262, 361, 560
Hpy8I	GTNNAC	2 cut(s)	40, 596
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	2 cut(s)	358, 613
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	598
HpyF3I	CTNAG	2 cut(s)	486, 625
Hsp92II	CATG	7 cut(s)	54, 94, 200, 217, 364, 479, 548
LguI	GCTCTTC	1 cut(s)	228
LpnPI	CCDG	9 cut(s)	138, 165, 177, 187, 240, 267, 380, 417, 444
LweI	GCATC	2 cut(s)	61, 579
MaeIII	GTNAC	2 cut(s)	499, 539
MbiI	CCGCTC	1 cut(s)	456
MboII	GAAGA	1 cut(s)	215
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	1 cut(s)	320
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	35, 626
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	2 cut(s)	270, 312
MslI	CAYNNNNRTG	3 cut(s)	49, 55, 516
Msp20I	TGGCCA	1 cut(s)	131
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	3 cut(s)	153, 228, 432
MvaI	CCWGG	2 cut(s)	153, 432
MvnI	CGCG	1 cut(s)	505
MwoI	GCNNNNNNNGC	1 cut(s)	598
NciI	CCSGG	1 cut(s)	228
NlaIII	CATG	7 cut(s)	54, 94, 200, 217, 364, 479, 548
NlaIV	GGNNCC	1 cut(s)	449
NmuCI	GTSAC	1 cut(s)	499
NspI	RCATGY	1 cut(s)	54
PagI	TCATGA	1 cut(s)	360
PciI	ACATGT	1 cut(s)	50
PciSI	GCTCTTC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	250
PfeI	GAWTC	3 cut(s)	94, 188, 250
PkrI	GCNGC	1 cut(s)	507
PleI	GAGTC	2 cut(s)	35, 626
PpsI	GAGTC	2 cut(s)	35, 626
PscI	ACATGT	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	151, 430
PspGI	CCWGG	2 cut(s)	151, 430
PspN4I	GGNNCC	1 cut(s)	449
PspPI	GGNCC	1 cut(s)	621
RseI	CAYNNNNRTG	3 cut(s)	49, 55, 516
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	270, 312
SatI	GCNGC	1 cut(s)	506
Sau96I	GGNCC	1 cut(s)	621
SchI	GAGTC	2 cut(s)	35, 626
ScrFI	CCNGG	3 cut(s)	153, 228, 432
SetI	ASST	7 cut(s)	206, 223, 279, 302, 372, 401, 516
SfaNI	GCATC	2 cut(s)	61, 579
SmiMI	CAYNNNNRTG	3 cut(s)	49, 55, 516
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	320
SsiI	CCGC	3 cut(s)	445, 454, 505
StyD4I	CCNGG	3 cut(s)	151, 226, 430
TaaI	ACNGT	2 cut(s)	358, 613
TaqI	TCGA	1 cut(s)	253
TasI	AATT	1 cut(s)	320
TauI	GCSGC	1 cut(s)	508
TfiI	GAWTC	3 cut(s)	94, 188, 250
Tru1I	TTAA	2 cut(s)	270, 312
Tru9I	TTAA	2 cut(s)	270, 312
TseFI	GTSAC	1 cut(s)	499
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	8 cut(s)	18, 107, 168, 172, 230, 377, 395, 492
TspGWI	ACGGA	2 cut(s)	22, 45
XceI	RCATGY	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.