AT5G20380

Transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
6887636 .. 6892571
4936 bp
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UTR
Exon/CDS
Intron
AT5G20380.2

Sequence Viewer

Length: 1554 bp
ATGGCGAGACTTACCTTGAGACCCCACAATCACTTCTTCTCATCTCCTATCTACGCACATAAACAACCTTTCCTCTCCGTATACACCATCTTCCCCCACCACCACCAAAATCCTCTTATCAAATCAAGGGTTAAGTGCTCCGCCAGTGGTACTGAACGAGTCAGAGAGAGTAAGAAGCTTCCTCCAAAGGATCCTATCGAAGACCCTAAACCCCAGCTTCCGATTCCTGAAGTTCTCAGTACGGAAACGGGTTTTGAACAGAATTGGCCTCCATGGAAAAATATACCTCAGAGATATAAGCTTATCGGCGCTACTTCTCTCGCCTTTGTTATCTGCAATATGGACAAGGTGAACTTGAGTATTGCTATAATACCAATGTCACACCAGTTTGGATGGAGCTCATCTGTGGCTGGGTTGGTCCAGTCTTCCTTCTTTTGGGGTTATGCCTTGAGCCAGTTGCCTGGAGGTTGGCTTTCCAAGATTTTTGGCGGAAGAAAAGTGCTTGAGATTGGTGTCTTTACATGGTCTTTCGCTACAGCTCTTGTTCCACTACTTGCTGGATTTATGCCCGGTTTGATCTTTTCTCGAATTTTGGTGGGAATAGGAGAAGGTGTTTCCCCATCGGCTGCGACAGACCTTATTGCCAGGACAATACCTGTTAAGGAGCGCTCAAGAGCGGTAGGCTTTGTTTTTGGAGGACTGAGTTTGGGGAGTGTAATGGGGCTTCTCTTGGCTCCTCCCATCATCGAAACCTTTAATTGGGAATCTGTCTTTTACTTGTTTGGTCTCCTTGGTGTTGGCTGGTTCGTCGGGTTTCAGTTTCTTAATGAAGAAGAAGTTTCATATAAAGGTAATGAGATCTCTACTTCGCATAAATCAGAAAACGCTACAAAGGAAGAGTTGGGGAGCTCATTGAAGGAGATTCCATGGAAGTCATTTTTCCAAAGCCCGGCTGTTTGGGCAATGATATACACTCACTTTTGTGGAAGTTGGGGTCACTATACCTGTTTATCTTGGCTACCAACTTATTTCAGTGAGGCTCTGAGTCTAAATTTGACAGAAGCTGCTTGGGTTTCCATCCTTCCTCCACTGGCTTCGATTGTCGTGACAAGTCTTGCTTCACAATTTGCTGATTACTTAATTACAAATGGAGTTGATACTACCACGGTCCGAAAGATTTGTCAAACGATTGCGTTTGTGGCACCAGCGATCTGCATGACACTTTCATCTGTGGACATTGGATTGCCACCATGGGAAATTGTAGGAATTTTGACAGCAGGCTTGGCCCTATCAAGTTTTGCTTTATCAGGACTTTATTGTACTCATCAGGACATTTCACCCGAATATGCAAGCATACTCCTGGGTATTACAAACACAGTCGGGGCAGTACCTGGAATTGTAGGAGTGGCCCTAACTGGTTTTCTCCTAGACTCGACCCATTCCTGGACTATGTCTCTATTCGTGCCATCAATATTCTTCTACTTGACGGGGACGGTTGTATGGTTGGCATTTGCAAGCAGTGAGCCTCAGACGTTCAGAAAGGAAGACTCATAA

Protein Analysis

517

Amino Acids

56.68

Weight (kDa)

6.64

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 158 - 520 6.4e-51 Major Facilitator Superfamily
Sugar_tr PF00083 185 - 431 3.8e-06 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1201
AccBSI CCGCTC 1 cut(s) 677
AccI GTMKAC 1 cut(s) 81
AciI CCGC 3 cut(s) 141, 489, 677
AclWI GGATC 2 cut(s) 185, 198
AcsI RAATTY 3 cut(s) 588, 1051, 1266
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 4 cut(s) 151, 241, 1321, 1389
AfeI AGCGCT 1 cut(s) 668
AfiI CCNNNNNNNGG 4 cut(s) 435, 759, 949, 1443
AgsI TTSAA 2 cut(s) 257, 916
AjnI CCWGG 5 cut(s) 460, 644, 1359, 1390, 1442
AleI CACNNNNGTG 1 cut(s) 981
AluBI AGCT 7 cut(s) 178, 217, 301, 399, 539, 909, 1064
AluI AGCT 7 cut(s) 178, 217, 301, 399, 539, 909, 1064
Alw21I GWGCWC 3 cut(s) 140, 401, 911
Alw26I GTCTC 3 cut(s) 13, 791, 1458
AlwI GGATC 2 cut(s) 185, 198
AlwNI CAGNNNCTG 2 cut(s) 1064, 1391
Aor51HI AGCGCT 1 cut(s) 668
AoxI GGCC 3 cut(s) 266, 1284, 1407
ApeKI GCWGC 2 cut(s) 626, 1064
ApoI RAATTY 3 cut(s) 588, 1051, 1266
ArsI GACNNNNNNTTYG 2 cut(s) 1165, 1197
AspLEI GCGC 2 cut(s) 311, 669
AspS9I GGNCC 4 cut(s) 418, 1168, 1285, 1408
AsuC2I CCSGG 2 cut(s) 570, 950
AsuHPI GGTGA 2 cut(s) 361, 1329
AvaII GGWCC 2 cut(s) 418, 1168
BamHI GGATCC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 1201
BanII GRGCYC 2 cut(s) 401, 911
BarI GAAGNNNNNNTAC 2 cut(s) 708, 740
BbsI GAAGAC 2 cut(s) 207, 417
Bbv12I GWGCWC 3 cut(s) 140, 401, 911
BbvI GCAGC 2 cut(s) 613, 1051
BccI CCATC 6 cut(s) 95, 387, 628, 749, 1085, 1474
BciT130I CCWGG 5 cut(s) 462, 646, 1361, 1392, 1444
BcnI CCSGG 2 cut(s) 570, 950
BcoDI GTCTC 3 cut(s) 13, 791, 1458
BfaI CTAG 1 cut(s) 1427
BfmI CTRYAG 1 cut(s) 534
BfoI RGCGCY 2 cut(s) 312, 670
BglII AGATCT 1 cut(s) 858
BisI GCNGC 2 cut(s) 627, 1065
BlsI GCNGC 2 cut(s) 628, 1066
Bme1390I CCNGG 7 cut(s) 462, 570, 646, 950, 1361, 1392, 1444
Bme18I GGWCC 2 cut(s) 418, 1168
BmgT120I GGNCC 4 cut(s) 418, 1168, 1285, 1408
BmiI GGNNCC 3 cut(s) 192, 735, 1203
BmrFI CCNGG 7 cut(s) 462, 570, 646, 950, 1361, 1392, 1444
BpiI GAAGAC 2 cut(s) 207, 417
BpmI CTGGAG 1 cut(s) 483
BpuEI CTTGAG 5 cut(s) 37, 376, 469, 524, 655
BpuMI CCSGG 2 cut(s) 570, 950
BsaI GGTCTC 2 cut(s) 13, 791
BsaJI CCNNGG 6 cut(s) 272, 790, 926, 1164, 1250, 1360
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 4 cut(s) 435, 759, 949, 1443
Bse1I ACTGG 6 cut(s) 144, 385, 421, 454, 1095, 1420
Bse3DI GCAATG 1 cut(s) 969
BseBI CCWGG 5 cut(s) 462, 646, 1361, 1392, 1444
BseDI CCNNGG 6 cut(s) 272, 790, 926, 1164, 1250, 1360
BseGI GGATG 2 cut(s) 398, 1077
BseLI CCNNNNNNNGG 4 cut(s) 435, 759, 949, 1443
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 5 cut(s) 250, 302, 692, 1034, 1541
BseNI ACTGG 6 cut(s) 144, 385, 421, 454, 1095, 1420
BseRI GAGGAG 1 cut(s) 726
BseXI GCAGC 2 cut(s) 613, 1051
BseYI CCCAGC 2 cut(s) 213, 410
BshFI GGCC 3 cut(s) 268, 1286, 1409
BshNI GGYRCC 1 cut(s) 1201
BsiHKAI GWGCWC 3 cut(s) 140, 401, 911
BsiSI CCGG 2 cut(s) 570, 950
BslFI GGGAC 1 cut(s) 1504
BslI CCNNNNNNNGG 4 cut(s) 435, 759, 949, 1443
BsmAI GTCTC 3 cut(s) 13, 791, 1458
BsmFI GGGAC 1 cut(s) 1504
BsnI GGCC 3 cut(s) 268, 1286, 1409
Bso31I GGTCTC 2 cut(s) 13, 791
Bsp1286I GDGCHC 3 cut(s) 140, 401, 911
Bsp143I GATC 4 cut(s) 190, 576, 858, 1209
Bsp19I CCATGG 3 cut(s) 272, 926, 1250
BspACI CCGC 3 cut(s) 141, 489, 677
BspANI GGCC 3 cut(s) 268, 1286, 1409
BspCNI CTCAG 5 cut(s) 249, 301, 693, 1035, 1540
BspLI GGNNCC 3 cut(s) 192, 735, 1203
BspPI GGATC 2 cut(s) 185, 198
BspT107I GGYRCC 1 cut(s) 1201
BspTNI GGTCTC 2 cut(s) 13, 791
BsrBI CCGCTC 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 969
BsrI ACTGG 6 cut(s) 144, 385, 421, 454, 1095, 1420
BssECI CCNNGG 6 cut(s) 272, 790, 926, 1164, 1250, 1360
BssMI GATC 4 cut(s) 190, 576, 858, 1209
BssNAI GTATAC 1 cut(s) 82
BssT1I CCWWGG 4 cut(s) 272, 790, 926, 1250
Bst1107I GTATAC 1 cut(s) 82
Bst2UI CCWGG 5 cut(s) 462, 646, 1361, 1392, 1444
Bst4CI ACNGT 3 cut(s) 1168, 1378, 1495
Bst6I CTCTTC 1 cut(s) 891
BstC8I GCNNGC 3 cut(s) 1279, 1351, 1516
BstDEI CTNAG 5 cut(s) 236, 288, 701, 1043, 1527
BstDSI CCRYGG 4 cut(s) 272, 926, 1164, 1250
BstF5I GGATG 2 cut(s) 398, 1077
BstH2I RGCGCY 2 cut(s) 312, 670
BstHHI GCGC 2 cut(s) 311, 669
BstKTI GATC 4 cut(s) 193, 579, 861, 1212
BstMAI GTCTC 3 cut(s) 13, 791, 1458
BstMBI GATC 4 cut(s) 190, 576, 858, 1209
BstMWI GCNNNNNNNGC 3 cut(s) 959, 1199, 1283
BstNI CCWGG 5 cut(s) 462, 646, 1361, 1392, 1444
BstSCI CCNGG 7 cut(s) 460, 568, 644, 948, 1359, 1390, 1442
BstSFI CTRYAG 1 cut(s) 534
BstV1I GCAGC 2 cut(s) 613, 1051
BstV2I GAAGAC 2 cut(s) 207, 417
BstX2I RGATCY 2 cut(s) 190, 858
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 2 cut(s) 190, 858
BstZ17I GTATAC 1 cut(s) 82
BsuRI GGCC 3 cut(s) 268, 1286, 1409
BtgI CCRYGG 4 cut(s) 272, 926, 1164, 1250
BtsCI GGATG 2 cut(s) 398, 1077
BtsI GCAGTG 1 cut(s) 1525
BtsIMutI CAGTG 4 cut(s) 151, 1039, 1088, 1525
Cac8I GCNNGC 3 cut(s) 1279, 1351, 1516
CaiI CAGNNNCTG 2 cut(s) 1064, 1391
CfoI GCGC 2 cut(s) 311, 669
Cfr13I GGNCC 4 cut(s) 418, 1168, 1285, 1408
CpoI CGGWCCG 1 cut(s) 1168
Csp6I GTAC 4 cut(s) 150, 240, 1320, 1388
CspI CGGWCCG 1 cut(s) 1168
CviAII CATG 5 cut(s) 273, 522, 927, 1216, 1251
CviQI GTAC 4 cut(s) 150, 240, 1320, 1388
DdeI CTNAG 5 cut(s) 236, 288, 701, 1043, 1527
DpnI GATC 4 cut(s) 192, 578, 860, 1211
DpnII GATC 4 cut(s) 190, 576, 858, 1209
Eam1104I CTCTTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 891
EciI GGCGGA 2 cut(s) 130, 504
Ecl136II GAGCTC 2 cut(s) 399, 909
Eco130I CCWWGG 4 cut(s) 272, 790, 926, 1250
Eco24I GRGCYC 2 cut(s) 401, 911
Eco31I GGTCTC 2 cut(s) 13, 791
Eco47I GGWCC 2 cut(s) 418, 1168
Eco47III AGCGCT 1 cut(s) 668
Eco53kI GAGCTC 2 cut(s) 399, 909
Eco57I CTGAAG 1 cut(s) 249
EcoICRI GAGCTC 2 cut(s) 399, 909
EcoRII CCWGG 5 cut(s) 460, 644, 1359, 1390, 1442
EcoT14I CCWWGG 4 cut(s) 272, 790, 926, 1250
EcoT38I GRGCYC 2 cut(s) 401, 911
ErhI CCWWGG 4 cut(s) 272, 790, 926, 1250
FaeI CATG 5 cut(s) 276, 525, 930, 1219, 1254
FalI AAGNNNNNCTT 6 cut(s) 338, 370, 1102, 1134, 1285, 1317
FaqI GGGAC 1 cut(s) 1504
FatI CATG 5 cut(s) 272, 521, 926, 1215, 1250
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 627, 1065
FokI GGATG 2 cut(s) 405, 1064
FriOI GRGCYC 2 cut(s) 401, 911
Fsp4HI GCNGC 2 cut(s) 627, 1065
FspBI CTAG 1 cut(s) 1427
GlaI GCGC 2 cut(s) 310, 668
GluI GCNGC 2 cut(s) 627, 1065
GsaI CCCAGC 2 cut(s) 217, 414
GsuI CTGGAG 1 cut(s) 483
HaeII RGCGCY 2 cut(s) 312, 670
HaeIII GGCC 3 cut(s) 268, 1286, 1409
HapII CCGG 2 cut(s) 570, 950
HhaI GCGC 2 cut(s) 311, 669
Hin1II CATG 5 cut(s) 276, 525, 930, 1219, 1254
Hin6I GCGC 2 cut(s) 309, 667
HinP1I GCGC 2 cut(s) 309, 667
HindIII AAGCTT 2 cut(s) 176, 299
HinfI GANTC 7 cut(s) 159, 223, 764, 922, 1045, 1430, 1547
HpaII CCGG 2 cut(s) 570, 950
HphI GGTGA 2 cut(s) 361, 1329
Hpy166II GTNNAC 3 cut(s) 82, 352, 1234
Hpy188I TCNGA 8 cut(s) 164, 222, 291, 880, 1044, 1172, 1530, 1538
Hpy188III TCNNGA 6 cut(s) 227, 585, 672, 1105, 1308, 1328
Hpy8I GTNNAC 3 cut(s) 82, 352, 1234
Hpy99I CGWCG 1 cut(s) 812
HpyAV CCTTC 4 cut(s) 439, 602, 910, 1091
HpyCH4III ACNGT 3 cut(s) 1168, 1378, 1495
HpyCH4IV ACGT 1 cut(s) 1532
HpyCH4V TGCA 4 cut(s) 336, 1215, 1349, 1514
HpyF10VI GCNNNNNNNGC 3 cut(s) 959, 1199, 1283
HpyF3I CTNAG 5 cut(s) 236, 288, 701, 1043, 1527
HpySE526I ACGT 1 cut(s) 1532
Hsp92II CATG 5 cut(s) 276, 525, 930, 1219, 1254
HspAI GCGC 2 cut(s) 309, 667
Kzo9I GATC 4 cut(s) 190, 576, 858, 1209
LmnI GCTCC 5 cut(s) 143, 396, 664, 739, 906
Lsp1109I GCAGC 2 cut(s) 613, 1051
MaeI CTAG 1 cut(s) 1427
MaeII ACGT 1 cut(s) 1532
MaeIII GTNAC 3 cut(s) 378, 995, 1105
MalI GATC 4 cut(s) 192, 578, 860, 1211
MbiI CCGCTC 1 cut(s) 677
MboI GATC 4 cut(s) 190, 576, 858, 1209
MboII GAAGA 9 cut(s) 28, 82, 212, 417, 504, 842, 845, 908, 1468
MflI RGATCY 2 cut(s) 190, 858
MhlI GDGCHC 3 cut(s) 140, 401, 911
MluCI AATT 9 cut(s) 262, 588, 757, 1051, 1124, 1140, 1257, 1266, 1395
MlyI GAGTC 4 cut(s) 168, 1054, 1424, 1541
MseI TTAA 5 cut(s) 132, 660, 756, 825, 1139
MslI CAYNNNNRTG 1 cut(s) 981
MspI CCGG 2 cut(s) 570, 950
MspR9I CCNGG 7 cut(s) 462, 570, 646, 950, 1361, 1392, 1444
MvaI CCWGG 5 cut(s) 462, 646, 1361, 1392, 1444
MwoI GCNNNNNNNGC 3 cut(s) 959, 1199, 1283
NciI CCSGG 2 cut(s) 570, 950
NcoI CCATGG 3 cut(s) 272, 926, 1250
NdeII GATC 4 cut(s) 190, 576, 858, 1209
NlaIII CATG 5 cut(s) 276, 525, 930, 1219, 1254
NlaIV GGNNCC 3 cut(s) 192, 735, 1203
NmuCI GTSAC 3 cut(s) 378, 995, 1105
OliI CACNNNNGTG 1 cut(s) 981
PfeI GAWTC 3 cut(s) 223, 764, 922
PflFI GACNNNGTC 1 cut(s) 1450
PfoI TCCNGGA 1 cut(s) 1442
PkrI GCNGC 2 cut(s) 628, 1066
PleI GAGTC 4 cut(s) 167, 1053, 1424, 1541
PpsI GAGTC 4 cut(s) 167, 1053, 1424, 1541
Psp124BI GAGCTC 2 cut(s) 401, 911
Psp6I CCWGG 5 cut(s) 460, 644, 1359, 1390, 1442
PspFI CCCAGC 2 cut(s) 213, 410
PspGI CCWGG 5 cut(s) 460, 644, 1359, 1390, 1442
PspN4I GGNNCC 3 cut(s) 192, 735, 1203
PspPI GGNCC 4 cut(s) 418, 1168, 1285, 1408
PstNI CAGNNNCTG 2 cut(s) 1064, 1391
PsuI RGATCY 2 cut(s) 190, 858
PsyI GACNNNGTC 1 cut(s) 1450
RsaI GTAC 4 cut(s) 151, 241, 1321, 1389
RsaNI GTAC 4 cut(s) 150, 240, 1320, 1388
RseI CAYNNNNRTG 1 cut(s) 981
Rsr2I CGGWCCG 1 cut(s) 1168
RsrII CGGWCCG 1 cut(s) 1168
SacI GAGCTC 2 cut(s) 401, 911
SaqAI TTAA 5 cut(s) 132, 660, 756, 825, 1139
SatI GCNGC 2 cut(s) 627, 1065
Sau3AI GATC 4 cut(s) 190, 576, 858, 1209
Sau96I GGNCC 4 cut(s) 418, 1168, 1285, 1408
SchI GAGTC 4 cut(s) 168, 1054, 1424, 1541
ScrFI CCNGG 7 cut(s) 462, 570, 646, 950, 1361, 1392, 1444
SduI GDGCHC 3 cut(s) 140, 401, 911
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 2 cut(s) 418, 1168
SmiMI CAYNNNNRTG 1 cut(s) 981
SmlI CTYRAG 5 cut(s) 16, 355, 448, 503, 670
SmoI CTYRAG 5 cut(s) 16, 355, 448, 503, 670
Sse9I AATT 9 cut(s) 262, 588, 757, 1051, 1124, 1140, 1257, 1266, 1395
SsiI CCGC 3 cut(s) 141, 489, 677
SspI AATATT 1 cut(s) 1473
SspMI CTAG 1 cut(s) 1427
SstI GAGCTC 2 cut(s) 401, 911
StyD4I CCNGG 7 cut(s) 460, 568, 644, 948, 1359, 1390, 1442
StyI CCWWGG 4 cut(s) 272, 790, 926, 1250
TaaI ACNGT 3 cut(s) 1168, 1378, 1495
TaiI ACGT 1 cut(s) 1535
TaqI TCGA 5 cut(s) 198, 586, 747, 1097, 1433
TasI AATT 9 cut(s) 262, 588, 757, 1051, 1124, 1140, 1257, 1266, 1395
TatI WGTACW 1 cut(s) 1319
TfiI GAWTC 3 cut(s) 223, 764, 922
Tru1I TTAA 5 cut(s) 132, 660, 756, 825, 1139
Tru9I TTAA 5 cut(s) 132, 660, 756, 825, 1139
TscAI CASTG 4 cut(s) 151, 1039, 1095, 1525
TseFI GTSAC 3 cut(s) 378, 995, 1105
TseI GCWGC 2 cut(s) 626, 1064
Tsp45I GTSAC 3 cut(s) 378, 995, 1105
TspDTI ATGAA 3 cut(s) 831, 843, 1215
TspGWI ACGGA 2 cut(s) 67, 257
TspRI CASTG 4 cut(s) 151, 1039, 1095, 1525
Tth111I GACNNNGTC 1 cut(s) 1450
VpaK11BI GGWCC 2 cut(s) 418, 1168
XapI RAATTY 3 cut(s) 588, 1051, 1266
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 1 cut(s) 1427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.