Rorug01G0473100

anion transporter 6

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
56409143 .. 56412216
3074 bp
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UTR
Exon/CDS
Intron
Rorug01G0473100.1

Sequence Viewer

Length: 585 bp
ATGTGGAAATTTTCTTTTGGTTCCTGGGACTGTGGTGCTCTGATTTGTGGCTTTGGTGGGTTTGGCGAGAGTGAGGATCGCAGATTCTATGCAAAAAAGTTTGAGGGTGATTTTCTTGCCGCTGTTCATTCTGCGAACAGTGTGCAGTTGAATTTTTCAAGTGGTTTGAACTCAGTGATGTCGACAAAGACTGCAAAAAGAAAGCTAAGGAGAATTTCTCAAGACAATAATGAAGATGGTCAAGATAATCAGACAGAAACACAAAGAATGTTTAATGATGAGAGTTTTGCTACTGTTTCAAATATGGACGCACATTGTCAGAGAAAATCACGAAGGTTGAAAAAAGCATGTCAACCGATGATGATGGAAGAGAACCAAATTCTGCACAACAGTGATGAAGATCGAAATACATGTGATCATCGTGATAAGCAAATTAGAAGTGATCAACAACATCGTGGTGCGATTGTAAATCAGATGTTCTTTGCTGATCGAAACTCAGATACTAATAGTACAACTGCTATGGGTGAATCTTCGCATTCAATCGGTCAAGCAATATATCAAAGAACTTTACAAGGTAATCTTTGA

Protein Analysis

194

Amino Acids

22.1

Weight (kDa)

7.0

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 182
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 84
AcsI RAATTY 4 cut(s) 8, 151, 213, 378
AfaI GTAC 1 cut(s) 511
AflIII ACRYGT 1 cut(s) 410
AgsI TTSAA 6 cut(s) 151, 159, 169, 300, 340, 540
AjnI CCWGG 1 cut(s) 23
AleI CACNNNNGTG 1 cut(s) 390
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw21I GWGCWC 1 cut(s) 40
AlwI GGATC 1 cut(s) 84
ApoI RAATTY 4 cut(s) 8, 151, 213, 378
AsuHPI GGTGA 2 cut(s) 119, 536
Bbv12I GWGCWC 1 cut(s) 40
BccI CCATC 2 cut(s) 230, 358
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciT130I CCWGG 1 cut(s) 25
BclI TGATCA 2 cut(s) 415, 442
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 25
BplI GAGNNNNNCTC 2 cut(s) 202, 234
Bpu10I CCTNAGC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 399
BsaJI CCNNGG 1 cut(s) 24
Bse8I GATNNNNATC 1 cut(s) 399
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 24
BseJI GATNNNNATC 1 cut(s) 399
BseMII CTCAG 2 cut(s) 186, 510
BsgI GTGCAG 2 cut(s) 164, 368
BsiHKAI GWGCWC 1 cut(s) 40
BslFI GGGAC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 5 cut(s) 76, 400, 415, 442, 487
BspACI CCGC 1 cut(s) 120
BspCNI CTCAG 2 cut(s) 185, 509
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 5 cut(s) 76, 400, 415, 442, 487
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 4 cut(s) 32, 140, 295, 392
Bst6I CTCTTC 1 cut(s) 363
BstDEI CTNAG 3 cut(s) 172, 206, 496
BstKTI GATC 5 cut(s) 79, 403, 418, 445, 490
BstMBI GATC 5 cut(s) 76, 400, 415, 442, 487
BstNI CCWGG 1 cut(s) 25
BstNSI RCATGY 2 cut(s) 351, 414
BstSCI CCNGG 1 cut(s) 23
BtsIMutI CAGTG 3 cut(s) 145, 180, 397
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 510
CviAII CATG 2 cut(s) 348, 411
CviJI RGCY 2 cut(s) 51, 205
CviKI_1 RGCY 2 cut(s) 51, 205
CviQI GTAC 1 cut(s) 510
DdeI CTNAG 3 cut(s) 172, 206, 496
DpnI GATC 5 cut(s) 78, 402, 417, 444, 489
DpnII GATC 5 cut(s) 76, 400, 415, 442, 487
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 23
FaeI CATG 2 cut(s) 351, 414
FaiI YATR 6 cut(s) 90, 305, 349, 412, 521, 556
FalI AAGNNNNNCTT 1 cut(s) 564
FaqI GGGAC 1 cut(s) 41
FatI CATG 2 cut(s) 347, 410
FbaI TGATCA 2 cut(s) 415, 442
FblI GTMKAC 1 cut(s) 182
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
HgaI GACGC 1 cut(s) 317
Hin1II CATG 2 cut(s) 351, 414
HincII GTYRAC 2 cut(s) 183, 353
HindII GTYRAC 2 cut(s) 183, 353
HinfI GANTC 2 cut(s) 84, 527
HphI GGTGA 2 cut(s) 119, 536
Hpy166II GTNNAC 2 cut(s) 183, 353
Hpy188I TCNGA 5 cut(s) 42, 252, 321, 474, 499
Hpy188III TCNNGA 4 cut(s) 221, 242, 330, 422
Hpy8I GTNNAC 2 cut(s) 183, 353
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 4 cut(s) 32, 140, 295, 392
HpyCH4V TGCA 4 cut(s) 92, 145, 194, 385
HpyF3I CTNAG 3 cut(s) 172, 206, 496
Hsp92II CATG 2 cut(s) 351, 414
Ksp22I TGATCA 2 cut(s) 415, 442
Kzo9I GATC 5 cut(s) 76, 400, 415, 442, 487
LpnPI CCDG 2 cut(s) 10, 37
MalI GATC 5 cut(s) 78, 402, 417, 444, 489
MboI GATC 5 cut(s) 76, 400, 415, 442, 487
MboII GAAGA 4 cut(s) 245, 380, 410, 522
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 5 cut(s) 8, 151, 213, 378, 432
MnlI CCTC 2 cut(s) 67, 97
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 2 cut(s) 390, 456
MspA1I CMGCKG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 25
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 1 cut(s) 25
NdeII GATC 5 cut(s) 76, 400, 415, 442, 487
NlaIII CATG 2 cut(s) 351, 414
NlaIV GGNNCC 1 cut(s) 22
NspI RCATGY 2 cut(s) 351, 414
OliI CACNNNNGTG 1 cut(s) 390
PciI ACATGT 1 cut(s) 410
PctI GAATGC 1 cut(s) 535
PfeI GAWTC 2 cut(s) 84, 527
PkrI GCNGC 1 cut(s) 121
PscI ACATGT 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 22
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
RseI CAYNNNNRTG 2 cut(s) 390, 456
SalI GTCGAC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 5 cut(s) 76, 400, 415, 442, 487
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 40
SetI ASST 3 cut(s) 207, 338, 577
SmiMI CAYNNNNRTG 2 cut(s) 390, 456
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 5 cut(s) 8, 151, 213, 378, 432
SsiI CCGC 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 23
TaaI ACNGT 4 cut(s) 32, 140, 295, 392
TaqI TCGA 3 cut(s) 182, 403, 490
TaqII GACCGA 1 cut(s) 533
TasI AATT 5 cut(s) 8, 151, 213, 378, 432
TatI WGTACW 1 cut(s) 509
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 2 cut(s) 84, 527
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 3 cut(s) 145, 180, 397
TspDTI ATGAA 3 cut(s) 116, 246, 411
TspRI CASTG 3 cut(s) 145, 180, 397
XapI RAATTY 4 cut(s) 8, 151, 213, 378
XceI RCATGY 2 cut(s) 351, 414
XmiI GTMKAC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.