Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003367.1

Orthogroup ID

OG0009581

Physical Location & Seq

Genomic Coordinates Reverse (-)

25518 .. 31564

Gene Structure 6047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003367.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

atggccaaactcactctccgagcagaaagctcctaccttttttcccacaccacctccacctcccactcccagccctcttctttcacctcagcaccgaaacgccgtcgtttgctgagcttcccttcgaagcacagcttgaaattcagagtcttttgcagcattaaggagaaggagagcatcaagagggtcaatgggatccccgccggcgataaggtccaccgggtcgggtcgggttcggattctgaaggcgagtcgggtctggaaagtgggtctggggctgtggggtttgatttggactggcctccgtggaagaacatacctcagagatataagctcattggcacaacttcattggcctttgttatctgtaacatggataaggtgaacttgagtattgctataattcccatgtcgcatcagtttggttggagttcgtcagtggctggattggttcagtcgtcctttttttgggggtatgctttgagtcaattgcctgggggctggcttgccaagatatttggtgggagaaaagttcttgagattggagtattaacttggtcattggctacagcacttgttcctttcgttgctggatttactcctggtttaattgtgtcaagaattttggtagggattggagaaggtgtttccccgtctgctgcaactgaccttattgccagaacaatacctttggaagagcgctcacgagccgtagcagttgtctttggtggtttgagcgtaggaagtgttgcagggtttcttctggctcctccccttatccaaaatcttggctggggatctgtcttttacatattttcccttttggggataggttggtatgtgggttttcagtttcttgaaggacaagcctcatgggttggatcccgttcagacatgaagacagcgcagcaaacttctccaaaagagttggctgactcgttgaaggatgtaccgtggaaggcatttttccgaagtgaagctgtttgggcaatgatatatgctcatttttgtggaagctggggtcattatacttgcctcgcatggcttcctacctattttagtgaggagctgaacctgaatttgaccgaagcggcgtgggtttctatccttcctccgttggcgtcaatatttgtgactagcgttgcatcccaaattgctgataacttgatttctagtggagttcaaaccactacggtccgaaaactttgccaaacaattgcctttttgtctcctgcagcttgtatgactctttcttctcttgatctaggattgccccattgggaagttgtgggaattctcactggtggtttagccctttcgagctttgcaatttcaggactttattgtacccatcaagatatatcacccgaatatgcaagcatacttttgggtattaccaatactgttggggcgctacctggagtagtaggcgttgccctcactggctatctacttgattcaactcattcatggagtatgtcattgttccttccatcaatattattctacctgactggtacaattgtttggttggtgtttgccagcagtaagcctcaaacctttacaaagggagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

525

Amino Acids

56.49

Weight (kDa)

8.57

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20380 AT5G20380
fragaria_vesca	FvH4_1g02110 FvH4_1g02110 FvH4_1g02110 FvH4_1g02110
malus_domestica	MD02G1019200.v1.1 MD15G1162900.v1.1
prunus_persica	Prupe.7G251900_v2.0.a1 Prupe.7G251900_v2.0.a1
pyrus_communis	pycom02g01710 pycom15g14650
rosa_chinensis	RchiOBHm_Chr2g0087161
rosa_laevigata	RLG00000015838
rosa_multiflora	Rmu_sc0003367.1_g000006
rosa_roxburghii	Rroxscaffold_2G00153830
rosa_rugosa	Rorug01G0473100
rosa_samantha	Rh2AG026200 Rh2BG026100 Rh2CG026700 Rh2DG026500
rosa_wichuraiana	Rw2G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	201, 1091
AclWI	GGATC	5 cut(s)	190, 203, 805, 876, 889
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	140, 621, 1078, 1293
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	1121
AfaI	GTAC	3 cut(s)	951, 1348, 1519
AfeI	AGCGCT	1 cut(s)	701
AfiI	CCNNNNNNNGG	2 cut(s)	468, 825
AgsI	TTSAA	5 cut(s)	139, 860, 943, 1184, 1461
AjnI	CCWGG	3 cut(s)	493, 601, 1417
AluBI	AGCT	9 cut(s)	30, 117, 135, 334, 980, 1017, 1069, 1238, 1323
AluI	AGCT	9 cut(s)	30, 117, 135, 334, 980, 1017, 1069, 1238, 1323
Alw26I	GTCTC	1 cut(s)	1233
AlwI	GGATC	5 cut(s)	190, 203, 805, 876, 889
AlwNI	CAGNNNCTG	1 cut(s)	443
Aor51HI	AGCGCT	1 cut(s)	701
AoxI	GGCC	3 cut(s)	3, 299, 354
ApeKI	GCWGC	4 cut(s)	156, 659, 907, 1235
ApoI	RAATTY	4 cut(s)	140, 621, 1078, 1293
AspLEI	GCGC	3 cut(s)	702, 907, 1414
AspS9I	GGNCC	2 cut(s)	214, 1195
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	76, 394, 1356
AsuII	TTCGAA	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	214, 1195
BaeI	ACNNNNGTAYC	2 cut(s)	1509, 1542
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	195, 881
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	905
BbvCI	CCTCAGC	1 cut(s)	88
BbvI	GCAGC	4 cut(s)	168, 646, 919, 1247
BccI	CCATC	2 cut(s)	1359, 1501
BceAI	ACGGC	2 cut(s)	87, 695
BcgI	CGANNNNNNTGC	2 cut(s)	1188, 1222
BciT130I	CCWGG	3 cut(s)	495, 603, 1419
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	1233
BfaI	CTAG	3 cut(s)	1137, 1173, 1265
BfmI	CTRYAG	2 cut(s)	567, 1233
BfoI	RGCGCY	2 cut(s)	703, 1415
BisI	GCNGC	5 cut(s)	157, 660, 908, 1092, 1236
BlpI	GCTNAGC	1 cut(s)	113
BlsI	GCNGC	5 cut(s)	158, 661, 909, 1093, 1237
Bme1390I	CCNGG	4 cut(s)	221, 495, 603, 1419
Bme18I	GGWCC	2 cut(s)	214, 1195
BmgT120I	GGNCC	2 cut(s)	214, 1195
BmiI	GGNNCC	3 cut(s)	197, 768, 883
BmrFI	CCNGG	4 cut(s)	221, 495, 603, 1419
BmsI	GCATC	3 cut(s)	186, 424, 1154
BpiI	GAAGAC	1 cut(s)	905
BpmI	CTGGAG	1 cut(s)	1440
Bpu10I	CCTNAGC	1 cut(s)	88
Bpu1102I	GCTNAGC	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	409, 557
BpuMI	CCSGG	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	1121
BsaJI	CCNNGG	3 cut(s)	305, 494, 953
BsaXI	ACNNNNNCTCC	5 cut(s)	30, 38, 68, 630, 660
Bsc4I	CCNNNNNNNGG	2 cut(s)	468, 825
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	4 cut(s)	302, 1306, 1447, 1519
Bse3DI	GCAATG	1 cut(s)	996
BseBI	CCWGG	3 cut(s)	495, 603, 1419
BseDI	CCNNGG	3 cut(s)	305, 494, 953
BseGI	GGATG	2 cut(s)	952, 1145
BseLI	CCNNNNNNNGG	2 cut(s)	468, 825
BseMI	GCAATG	1 cut(s)	996
BseMII	CTCAG	3 cut(s)	102, 104, 335
BseNI	ACTGG	4 cut(s)	302, 1306, 1447, 1519
BseRI	GAGGAG	2 cut(s)	759, 1079
BseXI	GCAGC	4 cut(s)	168, 646, 919, 1247
BseYI	CCCAGC	3 cut(s)	69, 792, 1017
BshFI	GGCC	3 cut(s)	5, 301, 356
BsiSI	CCGG	2 cut(s)	204, 220
BslI	CCNNNNNNNGG	2 cut(s)	468, 825
BsmAI	GTCTC	1 cut(s)	1233
BsnI	GGCC	3 cut(s)	5, 301, 356
Bsp119I	TTCGAA	1 cut(s)	125
Bsp143I	GATC	4 cut(s)	195, 797, 881, 1261
Bsp1720I	GCTNAGC	1 cut(s)	113
BspACI	CCGC	2 cut(s)	201, 1091
BspANI	GGCC	3 cut(s)	5, 301, 356
BspCNI	CTCAG	3 cut(s)	101, 105, 334
BspLI	GGNNCC	3 cut(s)	197, 768, 883
BspMAI	CTGCAG	1 cut(s)	1237
BspPI	GGATC	5 cut(s)	190, 203, 805, 876, 889
BspQI	GCTCTTC	1 cut(s)	690
BspT104I	TTCGAA	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	996
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	4 cut(s)	302, 1306, 1447, 1519
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	305, 494, 953
BssMI	GATC	4 cut(s)	195, 797, 881, 1261
BssNI	GRCGYC	1 cut(s)	1121
BssSI	CACGAG	1 cut(s)	705
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	3 cut(s)	495, 603, 1419
Bst4CI	ACNGT	3 cut(s)	954, 1195, 1405
Bst6I	CTCTTC	2 cut(s)	82, 690
BstACI	GRCGYC	1 cut(s)	1121
BstBI	TTCGAA	1 cut(s)	125
BstC8I	GCNNGC	5 cut(s)	205, 503, 507, 1378, 1543
BstDEI	CTNAG	3 cut(s)	88, 113, 321
BstDSI	CCRYGG	2 cut(s)	305, 953
BstF5I	GGATG	2 cut(s)	952, 1145
BstH2I	RGCGCY	2 cut(s)	703, 1415
BstHHI	GCGC	3 cut(s)	702, 907, 1414
BstKTI	GATC	4 cut(s)	198, 800, 884, 1264
BstMAI	GTCTC	1 cut(s)	1233
BstMBI	GATC	4 cut(s)	195, 797, 881, 1261
BstMWI	GCNNNNNNNGC	1 cut(s)	986
BstNI	CCWGG	3 cut(s)	495, 603, 1419
BstSCI	CCNGG	4 cut(s)	219, 493, 601, 1417
BstSFI	CTRYAG	2 cut(s)	567, 1233
BstV1I	GCAGC	4 cut(s)	168, 646, 919, 1247
BstV2I	GAAGAC	1 cut(s)	905
BstX2I	RGATCY	3 cut(s)	195, 797, 881
BstXI	CCANNNNNNTGG	1 cut(s)	788
BstYI	RGATCY	3 cut(s)	195, 797, 881
BsuRI	GGCC	3 cut(s)	5, 301, 356
BtgI	CCRYGG	2 cut(s)	305, 953
BtsCI	GGATG	2 cut(s)	952, 1145
BtsIMutI	CAGTG	3 cut(s)	444, 1299, 1440
Cac8I	GCNNGC	5 cut(s)	205, 503, 507, 1378, 1543
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	3 cut(s)	702, 907, 1414
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	214, 1195
CpoI	CGGWCCG	1 cut(s)	1195
CseI	GACGC	1 cut(s)	1110
Csp6I	GTAC	3 cut(s)	950, 1347, 1518
CspI	CGGWCCG	1 cut(s)	1195
CviAII	CATG	6 cut(s)	373, 409, 873, 895, 1041, 1470
CviQI	GTAC	3 cut(s)	950, 1347, 1518
DdeI	CTNAG	3 cut(s)	88, 113, 321
DpnI	GATC	4 cut(s)	197, 799, 883, 1263
DpnII	GATC	4 cut(s)	195, 797, 881, 1261
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	82, 690
EarI	CTCTTC	2 cut(s)	82, 690
Eco47I	GGWCC	2 cut(s)	214, 1195
Eco47III	AGCGCT	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	264
EcoRI	GAATTC	1 cut(s)	1293
EcoRII	CCWGG	3 cut(s)	493, 601, 1417
FaeI	CATG	6 cut(s)	376, 412, 876, 898, 1044, 1473
FalI	AAGNNNNNCTT	4 cut(s)	119, 151, 371, 403
FatI	CATG	6 cut(s)	372, 408, 872, 894, 1040, 1469
FauI	CCCGC	1 cut(s)	208
Fnu4HI	GCNGC	5 cut(s)	157, 660, 908, 1092, 1236
FokI	GGATG	2 cut(s)	959, 1132
Fsp4HI	GCNGC	5 cut(s)	157, 660, 908, 1092, 1236
FspBI	CTAG	3 cut(s)	1137, 1173, 1265
GlaI	GCGC	3 cut(s)	701, 906, 1413
GluI	GCNGC	5 cut(s)	157, 660, 908, 1092, 1236
GsaI	CCCAGC	3 cut(s)	73, 796, 1021
GsuI	CTGGAG	1 cut(s)	1440
HaeII	RGCGCY	2 cut(s)	703, 1415
HaeIII	GGCC	3 cut(s)	5, 301, 356
HapII	CCGG	2 cut(s)	204, 220
HgaI	GACGC	1 cut(s)	1110
HhaI	GCGC	3 cut(s)	702, 907, 1414
Hin1I	GRCGYC	1 cut(s)	1121
Hin1II	CATG	6 cut(s)	376, 412, 876, 898, 1044, 1473
Hin6I	GCGC	3 cut(s)	700, 905, 1412
HinP1I	GCGC	3 cut(s)	700, 905, 1412
HinfI	GANTC	7 cut(s)	147, 239, 251, 484, 935, 1246, 1457
HpaII	CCGG	2 cut(s)	204, 220
HphI	GGTGA	3 cut(s)	76, 394, 1356
Hpy166II	GTNNAC	2 cut(s)	217, 385
Hpy188I	TCNGA	8 cut(s)	20, 146, 238, 244, 324, 892, 971, 1199
Hpy188III	TCNNGA	9 cut(s)	181, 260, 536, 618, 705, 857, 1259, 1335, 1355
Hpy8I	GTNNAC	2 cut(s)	217, 385
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	9 cut(s)	132, 163, 239, 635, 854, 937, 952, 1118, 1499
HpyCH4III	ACNGT	3 cut(s)	954, 1195, 1405
HpyCH4V	TGCA	7 cut(s)	156, 662, 752, 1145, 1235, 1328, 1376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	986
HpyF3I	CTNAG	3 cut(s)	88, 113, 321
Hsp92I	GRCGYC	1 cut(s)	1121
Hsp92II	CATG	6 cut(s)	376, 412, 876, 898, 1044, 1473
HspAI	GCGC	3 cut(s)	700, 905, 1412
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	195, 797, 881, 1261
LguI	GCTCTTC	1 cut(s)	690
LmnI	GCTCC	3 cut(s)	35, 772, 1066
Lsp1109I	GCAGC	4 cut(s)	168, 646, 919, 1247
LweI	GCATC	3 cut(s)	186, 424, 1154
MaeI	CTAG	3 cut(s)	1137, 1173, 1265
MaeIII	GTNAC	2 cut(s)	368, 1132
MalI	GATC	4 cut(s)	197, 799, 883, 1263
MboI	GATC	4 cut(s)	195, 797, 881, 1261
MboII	GAAGA	6 cut(s)	69, 322, 707, 752, 910, 1245
MfeI	CAATTG	3 cut(s)	488, 1215, 1521
MflI	RGATCY	3 cut(s)	195, 797, 881
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	156, 260, 493, 929, 1240
MmeI	TCCRAC	2 cut(s)	407, 859
Mox20I	TGGCCA	1 cut(s)	5
MreI	CGCCGGCG	1 cut(s)	203
MroNI	GCCGGC	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	162, 551, 608
MslI	CAYNNNNRTG	1 cut(s)	1008
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	204, 220
MspR9I	CCNGG	4 cut(s)	221, 495, 603, 1419
MunI	CAATTG	3 cut(s)	488, 1215, 1521
MvaI	CCWGG	3 cut(s)	495, 603, 1419
MwoI	GCNNNNNNNGC	1 cut(s)	986
NaeI	GCCGGC	1 cut(s)	205
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	4 cut(s)	195, 797, 881, 1261
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	6 cut(s)	376, 412, 876, 898, 1044, 1473
NlaIV	GGNNCC	3 cut(s)	197, 768, 883
NmuCI	GTSAC	1 cut(s)	1132
NspV	TTCGAA	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	690
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	239, 1457
PkrI	GCNGC	5 cut(s)	158, 661, 909, 1093, 1237
PleI	GAGTC	5 cut(s)	155, 259, 492, 929, 1240
PpsI	GAGTC	5 cut(s)	155, 259, 492, 929, 1240
Psp6I	CCWGG	3 cut(s)	493, 601, 1417
PspFI	CCCAGC	3 cut(s)	69, 792, 1017
PspGI	CCWGG	3 cut(s)	493, 601, 1417
PspN4I	GGNNCC	3 cut(s)	197, 768, 883
PspPI	GGNCC	2 cut(s)	214, 1195
PstI	CTGCAG	1 cut(s)	1237
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	3 cut(s)	195, 797, 881
RsaI	GTAC	3 cut(s)	951, 1348, 1519
RsaNI	GTAC	3 cut(s)	950, 1347, 1518
RseI	CAYNNNNRTG	1 cut(s)	1008
Rsr2I	CGGWCCG	1 cut(s)	1195
RsrII	CGGWCCG	1 cut(s)	1195
SapI	GCTCTTC	1 cut(s)	690
SaqAI	TTAA	3 cut(s)	162, 551, 608
SatI	GCNGC	5 cut(s)	157, 660, 908, 1092, 1236
Sau3AI	GATC	4 cut(s)	195, 797, 881, 1261
Sau96I	GGNCC	2 cut(s)	214, 1195
SchI	GAGTC	5 cut(s)	156, 260, 493, 929, 1240
ScrFI	CCNGG	4 cut(s)	221, 495, 603, 1419
SfaNI	GCATC	3 cut(s)	186, 424, 1154
SfcI	CTRYAG	2 cut(s)	567, 1233
SfuI	TTCGAA	1 cut(s)	125
SgrAI	CRCCGGYG	1 cut(s)	203
SinI	GGWCC	2 cut(s)	214, 1195
SmiMI	CAYNNNNRTG	1 cut(s)	1008
SmlI	CTYRAG	2 cut(s)	388, 536
SmoI	CTYRAG	2 cut(s)	388, 536
SsiI	CCGC	2 cut(s)	201, 1091
SspI	AATATT	2 cut(s)	1128, 1500
SspMI	CTAG	3 cut(s)	1137, 1173, 1265
StyD4I	CCNGG	4 cut(s)	219, 493, 601, 1417
TaaI	ACNGT	3 cut(s)	954, 1195, 1405
TaqI	TCGA	2 cut(s)	125, 1319
TaqII	GACCGA	1 cut(s)	1100
TauI	GCSGC	1 cut(s)	1094
TfiI	GAWTC	2 cut(s)	239, 1457
Tru1I	TTAA	3 cut(s)	162, 551, 608
Tru9I	TTAA	3 cut(s)	162, 551, 608
TscAI	CASTG	3 cut(s)	444, 1306, 1447
TseFI	GTSAC	1 cut(s)	1132
TseI	GCWGC	4 cut(s)	156, 659, 907, 1235
Tsp45I	GTSAC	1 cut(s)	1132
TspDTI	ATGAA	3 cut(s)	339, 911, 1458
TspGWI	ACGGA	2 cut(s)	294, 1104
TspRI	CASTG	3 cut(s)	444, 1306, 1447
VpaK11BI	GGWCC	2 cut(s)	214, 1195
XapI	RAATTY	4 cut(s)	140, 621, 1078, 1293
XspI	CTAG	3 cut(s)	1137, 1173, 1265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.