AT5G21070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012991
Physical Location & Seq
Forward (+)
7156063 .. 7157889
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G21070.1

Sequence Viewer

Length: 678 bp
ATGGATACTTTCACGGCGGAGGATCTGTCGACGATCGGCGGAATAGCGACAGTATCGCTCCTTCACTCGTTTATTCCGACGCATTGGCTACCTTTCTCCATCGTCGGACGTGCGCAGAAATGGACGCTTTCGAGAACACTCCTCGTCACTGCATTTGGAGCAGTCCTACATGTTATATCCACTTCTCTCCTTGGTATAACAGCAATCACAATGGCGAATACCATCGCTGGTGAAGAGACTGTTCACAAACTTGCTTCCCTTTTGCTTGTATTTCTCGGTGGAAGCTATGTTTTGCTGTTTTTGGCTGGTAAAGGTGGTCACACTCATTCTCATAACCAACCCATGGAGAAAATGGCTGTTGCTGGACTTGTCCTTGTTCCTGCATTATCTCCTTGTGCAACAACTCTCCCGGTTTTCCTCGCTGTTGGAAATTCCAAGTCCATGATGGTTCTCGCCATCATAGTTCTGCTCTTCAGCACCATATTGGTTATGACATCGCTGGTTGCTCTATCGTTCTATGGTGCAAGCCAGCTCAAGTTTCACTGGGTGGAGCGGTACGACAAACTACTGGTTGGTTCAGTCCTGTGTTTGGTAGGTATCTTAACCCTTCTCTTCCATGATCATGACCATGGCGGTCATGAAGCACATCAACTCCACAGGAAAATCATTACTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

24.21

Weight (kDa)

7.94

Isoelectric Point (pI)

21.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21070
fragaria_vesca FvH4_3g27140 FvH4_3g27140
malus_domestica MD11G1180800.v1.1
prunus_persica Prupe.6G153600_v2.0.a1
pyrus_communis pycom11g15600
rosa_chinensis RchiOBHm_Chr5g0049761 RchiOBHm_Chr5g0049771
rosa_laevigata RLG00000034645
rosa_multiflora Rmu_sc0008923.1_g000002 Rmu_sc0015943.1_g000004 Rmu_sc0027409.1_g000001
rosa_roxburghii Rroxscaffold_1G00031700
rosa_rugosa Rorug05G0251000
rosa_samantha Rh5AG327000 Rh5BG338100 Rh5DG350300
rosa_wichuraiana Rw5G030890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 114
AccB7I CCANNNNNTGG 1 cut(s) 343
AccBSI CCGCTC 1 cut(s) 553
AccI GTMKAC 1 cut(s) 29
AciI CCGC 4 cut(s) 17, 39, 553, 633
AclWI GGATC 1 cut(s) 30
AcsI RAATTY 1 cut(s) 430
AcuI CTGAAG 1 cut(s) 457
AdeI CACNNNGTG 1 cut(s) 547
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 2 cut(s) 343, 589
AflIII ACRYGT 1 cut(s) 169
AjiI CACGTC 1 cut(s) 110
AluBI AGCT 2 cut(s) 285, 532
AluI AGCT 2 cut(s) 285, 532
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 430
AspLEI GCGC 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 242
BarI GAAGNNNNNNTAC 2 cut(s) 45, 77
BccI CCATC 4 cut(s) 107, 230, 439, 464
BceAI ACGGC 1 cut(s) 30
BclI TGATCA 1 cut(s) 619
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 1 cut(s) 230
Bme1390I CCNGG 1 cut(s) 410
BmgBI CACGTC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 410
BmrI ACTGGG 1 cut(s) 553
BmuI ACTGGG 1 cut(s) 553
BpuEI CTTGAG 1 cut(s) 518
BpuMI CCSGG 1 cut(s) 410
BsaJI CCNNGG 3 cut(s) 190, 342, 628
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 636, 666
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 589
Bse1I ACTGG 2 cut(s) 548, 573
BseDI CCNNGG 3 cut(s) 190, 342, 628
BseLI CCNNNNNNNGG 2 cut(s) 343, 589
BseNI ACTGG 2 cut(s) 548, 573
BseRI GAGGAG 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 343, 589
BsmAI GTCTC 1 cut(s) 230
Bsp143I GATC 3 cut(s) 22, 33, 619
Bsp19I CCATGG 2 cut(s) 342, 628
BspACI CCGC 4 cut(s) 17, 39, 553, 633
BspHI TCATGA 2 cut(s) 622, 637
BspPI GGATC 1 cut(s) 30
BspQI GCTCTTC 1 cut(s) 476
BsrBI CCGCTC 1 cut(s) 553
BsrI ACTGG 2 cut(s) 548, 573
BssECI CCNNGG 3 cut(s) 190, 342, 628
BssMI GATC 3 cut(s) 22, 33, 619
BssT1I CCWWGG 3 cut(s) 190, 342, 628
Bst4CI ACNGT 2 cut(s) 52, 241
Bst6I CTCTTC 3 cut(s) 228, 476, 617
BstC8I GCNNGC 2 cut(s) 526, 530
BstDSI CCRYGG 2 cut(s) 342, 628
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 3 cut(s) 25, 36, 622
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 3 cut(s) 22, 33, 619
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BtgI CCRYGG 2 cut(s) 342, 628
BtgZI GCGATG 2 cut(s) 208, 480
BtrI CACGTC 1 cut(s) 110
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 147, 541
Cac8I GCNNGC 2 cut(s) 526, 530
CciI TCATGA 2 cut(s) 622, 637
CfoI GCGC 1 cut(s) 115
CseI GACGC 2 cut(s) 88, 133
Csp6I GTAC 1 cut(s) 556
CviAII CATG 7 cut(s) 170, 343, 442, 617, 623, 629, 638
CviJI RGCY 6 cut(s) 88, 285, 305, 356, 528, 532
CviKI_1 RGCY 6 cut(s) 88, 285, 305, 356, 528, 532
CviQI GTAC 1 cut(s) 556
DpnI GATC 3 cut(s) 24, 35, 621
DpnII GATC 3 cut(s) 22, 33, 619
DraIII CACNNNGTG 1 cut(s) 547
Eam1104I CTCTTC 3 cut(s) 228, 476, 617
EarI CTCTTC 3 cut(s) 228, 476, 617
EciI GGCGGA 2 cut(s) 32, 54
Eco130I CCWWGG 3 cut(s) 190, 342, 628
Eco57I CTGAAG 1 cut(s) 457
EcoT14I CCWWGG 3 cut(s) 190, 342, 628
ErhI CCWWGG 3 cut(s) 190, 342, 628
FaeI CATG 7 cut(s) 173, 346, 445, 620, 626, 632, 641
FatI CATG 7 cut(s) 169, 342, 441, 616, 622, 628, 637
FbaI TGATCA 1 cut(s) 619
FblI GTMKAC 1 cut(s) 29
FspI TGCGCA 1 cut(s) 114
GlaI GCGC 1 cut(s) 114
HapII CCGG 1 cut(s) 410
HgaI GACGC 2 cut(s) 88, 133
HhaI GCGC 1 cut(s) 115
Hin1II CATG 7 cut(s) 173, 346, 445, 620, 626, 632, 641
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HpaII CCGG 1 cut(s) 410
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 2 cut(s) 30, 244
Hpy188I TCNGA 2 cut(s) 78, 107
Hpy188III TCNNGA 3 cut(s) 132, 623, 638
Hpy8I GTNNAC 2 cut(s) 30, 244
Hpy99I CGWCG 3 cut(s) 34, 82, 107
HpyAV CCTTC 2 cut(s) 71, 617
HpyCH4III ACNGT 2 cut(s) 52, 241
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 4 cut(s) 152, 383, 398, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 7 cut(s) 173, 346, 445, 620, 626, 632, 641
HspAI GCGC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 3 cut(s) 22, 33, 619
LguI GCTCTTC 1 cut(s) 476
LmnI GCTCC 3 cut(s) 63, 158, 550
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 2 cut(s) 145, 317
MalI GATC 3 cut(s) 24, 35, 621
MbiI CCGCTC 1 cut(s) 553
MboI GATC 3 cut(s) 22, 33, 619
MboII GAAGA 3 cut(s) 245, 463, 604
MflI RGATCY 1 cut(s) 22
MluCI AATT 1 cut(s) 430
MmeI TCCRAC 3 cut(s) 85, 101, 406
MnlI CCTC 3 cut(s) 13, 152, 428
MseI TTAA 1 cut(s) 602
MslI CAYNNNNRTG 2 cut(s) 621, 627
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 158
NciI CCSGG 1 cut(s) 410
NcoI CCATGG 2 cut(s) 342, 628
NdeII GATC 3 cut(s) 22, 33, 619
NlaIII CATG 7 cut(s) 173, 346, 445, 620, 626, 632, 641
NmuCI GTSAC 2 cut(s) 145, 317
NsbI TGCGCA 1 cut(s) 114
NspI RCATGY 1 cut(s) 173
PagI TCATGA 2 cut(s) 622, 637
PciI ACATGT 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 476
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 343
Ple19I CGATCG 1 cut(s) 36
PscI ACATGT 1 cut(s) 169
PsuI RGATCY 1 cut(s) 22
PvuI CGATCG 1 cut(s) 36
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 2 cut(s) 621, 627
SalI GTCGAC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 476
SaqAI TTAA 1 cut(s) 602
Sau3AI GATC 3 cut(s) 22, 33, 619
ScrFI CCNGG 1 cut(s) 410
SetI ASST 6 cut(s) 94, 112, 287, 316, 534, 598
SmiMI CAYNNNNRTG 2 cut(s) 621, 627
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 1 cut(s) 430
SsiI CCGC 4 cut(s) 17, 39, 553, 633
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 3 cut(s) 190, 342, 628
TaaI ACNGT 2 cut(s) 52, 241
TaiI ACGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 29, 131
TasI AATT 1 cut(s) 430
Tru1I TTAA 1 cut(s) 602
Tru9I TTAA 1 cut(s) 602
TscAI CASTG 2 cut(s) 154, 548
TseFI GTSAC 2 cut(s) 145, 317
Tsp45I GTSAC 2 cut(s) 145, 317
TspDTI ATGAA 1 cut(s) 654
TspRI CASTG 2 cut(s) 154, 548
Van91I CCANNNNNTGG 1 cut(s) 343
XapI RAATTY 1 cut(s) 430
XceI RCATGY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 2 cut(s) 349, 442
XmiI GTMKAC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.