Prupe.6G153600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012991
Physical Location & Seq
Reverse (-)
13358789 .. 13363452
4664 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G153600.1

Sequence Viewer

Length: 681 bp
ATGAACAATTTCAGCGCTGAAGATCTGTCAACCATCGGAGGAATCGCAACGGTGTCGCTTCTGCATTCCTTCATACCCACGCATTGGCTCCCCTTCTCCATCGTAGGCCGAGCCCAGAAATGGACTCTCTCCCGCACACTCTTCGTCACTGCATTTGGAGCAGTCTTGCATGTAATATCCACTTCAATACTCGGTATAACAGCAGTCACCATGGCAAATACCATAGCCGGCGAGGAAACAGTACATAAACTTGCTTCACTTCTGCTCGTAGTTCTTGGTGGCGGTTACATTTTGTTGTTCTTAACTGGAAAAGGCGGTCACAGTCATTCACACAACCAACCCATGGAAAAGATGGCTGTTGCAGGACTTGTACTCGTTCCTGCATTGTCTCCTTGTGCAACCACACTTCCGGTATTTCTTGCTGTTGGGAATTCATCTTCCATGATGGTGCTTGCTATCATAGTGCTGCTATTCAGCACCATAACCGTGATGACTTCACTGGTTGCACTGTCATTCTATGGTGCCAGTCAGCTCAAGTTTCACTGGGTGGAGCGGTACGACAAACTTCTTGTTGGGTCGGTGCTTTGTTTGGTAGGAATGTTGACACTTGTTTTTCATGATCATGATGGAGAGGGAGGTACCACTGGGGAGCATTTGCATAGGAAAATCATTGCCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

24.08

Weight (kDa)

7.22

Isoelectric Point (pI)

21.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21070
fragaria_vesca FvH4_3g27140 FvH4_3g27140
malus_domestica MD11G1180800.v1.1
prunus_persica Prupe.6G153600_v2.0.a1
pyrus_communis pycom11g15600
rosa_chinensis RchiOBHm_Chr5g0049761 RchiOBHm_Chr5g0049771
rosa_laevigata RLG00000034645
rosa_multiflora Rmu_sc0008923.1_g000002 Rmu_sc0015943.1_g000004 Rmu_sc0027409.1_g000001
rosa_roxburghii Rroxscaffold_1G00031700
rosa_rugosa Rorug05G0251000
rosa_samantha Rh5AG327000 Rh5BG338100 Rh5DG350300
rosa_wichuraiana Rw5G030890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 638
AccB1I GGYRCC 2 cut(s) 521, 638
AccB7I CCANNNNNTGG 2 cut(s) 84, 343
AccBSI CCGCTC 1 cut(s) 553
AciI CCGC 4 cut(s) 133, 282, 315, 553
AcsI RAATTY 1 cut(s) 430
AcuI CTGAAG 1 cut(s) 39
AdeI CACNNNGTG 1 cut(s) 547
AfaI GTAC 4 cut(s) 243, 372, 557, 640
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 3 cut(s) 84, 120, 343
AgsI TTSAA 1 cut(s) 186
AluBI AGCT 1 cut(s) 532
AluI AGCT 1 cut(s) 532
Alw26I GTCTC 1 cut(s) 393
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 466
ApoI RAATTY 1 cut(s) 430
Asp700I GAANNNNTTC 1 cut(s) 8
Asp718I GGTACC 1 cut(s) 638
AspLEI GCGC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 199
BanI GGYRCC 2 cut(s) 521, 638
BanII GRGCYC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 453
BccI CCATC 5 cut(s) 41, 107, 346, 439, 620
BcgI CGANNNNNNTGC 4 cut(s) 36, 70, 124, 158
BclI TGATCA 1 cut(s) 619
BcoDI GTCTC 1 cut(s) 393
BfoI RGCGCY 1 cut(s) 18
BglII AGATCT 1 cut(s) 22
BisI GCNGC 1 cut(s) 467
BlsI GCNGC 1 cut(s) 468
BmiI GGNNCC 3 cut(s) 89, 523, 640
BmrI ACTGGG 2 cut(s) 553, 654
BmuI ACTGGG 2 cut(s) 553, 654
BpuEI CTTGAG 1 cut(s) 518
BsaJI CCNNGG 2 cut(s) 210, 342
BsaWI WCCGGW 1 cut(s) 409
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 120, 343
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 5 cut(s) 310, 504, 525, 548, 649
Bse3DI GCAATG 1 cut(s) 669
BseDI CCNNGG 2 cut(s) 210, 342
BseLI CCNNNNNNNGG 3 cut(s) 84, 120, 343
BseMI GCAATG 1 cut(s) 669
BseNI ACTGG 5 cut(s) 310, 504, 525, 548, 649
BseXI GCAGC 1 cut(s) 453
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 2 cut(s) 521, 638
BsiSI CCGG 2 cut(s) 228, 410
BslI CCNNNNNNNGG 3 cut(s) 84, 120, 343
BsmAI GTCTC 1 cut(s) 393
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 22, 619
Bsp19I CCATGG 2 cut(s) 210, 342
BspACI CCGC 4 cut(s) 133, 282, 315, 553
BspANI GGCC 1 cut(s) 108
BspHI TCATGA 2 cut(s) 616, 622
BspLI GGNNCC 3 cut(s) 89, 523, 640
BspT107I GGYRCC 2 cut(s) 521, 638
BsrBI CCGCTC 1 cut(s) 553
BsrDI GCAATG 1 cut(s) 669
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 5 cut(s) 310, 504, 525, 548, 649
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 210, 342
BssMI GATC 2 cut(s) 22, 619
BssT1I CCWWGG 2 cut(s) 210, 342
Bst4CI ACNGT 5 cut(s) 52, 241, 323, 487, 510
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 229, 453
BstDSI CCRYGG 2 cut(s) 210, 342
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 2 cut(s) 25, 622
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 2 cut(s) 22, 619
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 453
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 2 cut(s) 210, 342
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 5 cut(s) 147, 497, 506, 541, 642
Cac8I GCNNGC 2 cut(s) 229, 453
CciI TCATGA 2 cut(s) 616, 622
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 227
Csp6I GTAC 4 cut(s) 242, 371, 556, 639
CviAII CATG 6 cut(s) 170, 211, 343, 442, 617, 623
CviJI RGCY 6 cut(s) 88, 108, 113, 227, 356, 532
CviKI_1 RGCY 6 cut(s) 88, 108, 113, 227, 356, 532
CviQI GTAC 4 cut(s) 242, 371, 556, 639
DpnI GATC 2 cut(s) 24, 621
DpnII GATC 2 cut(s) 22, 619
DraIII CACNNNGTG 1 cut(s) 547
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 210, 342
Eco24I GRGCYC 1 cut(s) 115
Eco47III AGCGCT 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 430
EcoT14I CCWWGG 2 cut(s) 210, 342
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 2 cut(s) 210, 342
FaeI CATG 6 cut(s) 173, 214, 346, 445, 620, 626
FatI CATG 6 cut(s) 169, 210, 342, 441, 616, 622
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 1 cut(s) 619
Fnu4HI GCNGC 1 cut(s) 467
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 467
GlaI GCGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 467
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 108
HapII CCGG 2 cut(s) 228, 410
HhaI GCGC 1 cut(s) 17
Hin1II CATG 6 cut(s) 173, 214, 346, 445, 620, 626
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 2 cut(s) 30, 603
HindII GTYRAC 2 cut(s) 30, 603
HinfI GANTC 2 cut(s) 42, 124
HpaII CCGG 2 cut(s) 228, 410
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 30, 603
Hpy188I TCNGA 2 cut(s) 38, 680
Hpy188III TCNNGA 2 cut(s) 617, 623
Hpy8I GTNNAC 2 cut(s) 30, 603
HpyAV CCTTC 2 cut(s) 79, 103
HpyCH4III ACNGT 5 cut(s) 52, 241, 323, 487, 510
HpyCH4V TGCA 8 cut(s) 64, 152, 169, 362, 383, 398, 506, 658
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92II CATG 6 cut(s) 173, 214, 346, 445, 620, 626
HspAI GCGC 1 cut(s) 15
KpnI GGTACC 1 cut(s) 642
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 2 cut(s) 22, 619
LmnI GCTCC 4 cut(s) 93, 158, 550, 649
Lsp1109I GCAGC 1 cut(s) 453
MaeIII GTNAC 4 cut(s) 145, 205, 284, 317
MalI GATC 2 cut(s) 24, 621
MbiI CCGCTC 1 cut(s) 553
MboI GATC 2 cut(s) 22, 619
MboII GAAGA 3 cut(s) 32, 133, 429
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 2 cut(s) 7, 430
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 4 cut(s) 32, 226, 625, 629
MroNI GCCGGC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 3 cut(s) 446, 485, 621
MspI CCGG 2 cut(s) 228, 410
Mva1269I GAATGC 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 158
NaeI GCCGGC 1 cut(s) 229
NcoI CCATGG 2 cut(s) 210, 342
NdeII GATC 2 cut(s) 22, 619
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 6 cut(s) 173, 214, 346, 445, 620, 626
NlaIV GGNNCC 3 cut(s) 89, 523, 640
NmeAIII GCCGAG 1 cut(s) 134
NmuCI GTSAC 3 cut(s) 145, 205, 317
NspI RCATGY 1 cut(s) 173
PagI TCATGA 2 cut(s) 616, 622
PctI GAATGC 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 42
PflMI CCANNNNNTGG 2 cut(s) 84, 343
PkrI GCNGC 1 cut(s) 468
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PspN4I GGNNCC 3 cut(s) 89, 523, 640
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 4 cut(s) 243, 372, 557, 640
RsaNI GTAC 4 cut(s) 242, 371, 556, 639
RseI CAYNNNNRTG 3 cut(s) 446, 485, 621
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 1 cut(s) 467
Sau3AI GATC 2 cut(s) 22, 619
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 1 cut(s) 115
SetI ASST 2 cut(s) 534, 640
SmiMI CAYNNNNRTG 3 cut(s) 446, 485, 621
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 2 cut(s) 7, 430
SsiI CCGC 4 cut(s) 133, 282, 315, 553
StyI CCWWGG 2 cut(s) 210, 342
TaaI ACNGT 5 cut(s) 52, 241, 323, 487, 510
TasI AATT 2 cut(s) 7, 430
TatI WGTACW 2 cut(s) 241, 370
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 5 cut(s) 154, 504, 513, 548, 649
TseFI GTSAC 3 cut(s) 145, 205, 317
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 3 cut(s) 145, 205, 317
TspDTI ATGAA 4 cut(s) 17, 61, 423, 605
TspRI CASTG 5 cut(s) 154, 504, 513, 548, 649
Van91I CCANNNNNTGG 2 cut(s) 84, 343
XapI RAATTY 1 cut(s) 430
XceI RCATGY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.