MD11G1180800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012991
Physical Location & Seq
Reverse (-)
22141124 .. 22144784
3661 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1180800.v1.1.491

Sequence Viewer

Length: 690 bp
ATGGAAAATTTCAGCGCCGAAGATCTGTCGACGATCGGAGGAATCGCAACCGTGTCGCTTCTGCATTCCTTCATACCCACGCATTGGCTCCCGTTCTCCATCGTCGGCCGAGCCCAGAAATGGACTCTCTCCCGCACCCTCTTCGTCACTGCATTTGGAGCAGTCTTGCATGTAATATCCACTGCAATATTAGGTATAACAGCGGTCACAATGGCAAACACCATCGCTGGCGAGGAAACAGTACATAAACTTGCTTCACTTCTGCTAGTATTTCTCGGTGGCGGTTACATTTTGTTGTTTTTATCTGGAAAAGGCGGTCACAGTCATTCACACAACCAACCCATGGAAAAGATGGCTGTTGCTGGACTTGTCCTTGTTCCTGCATTGTCTCCTTGTGCAACTACACTTCCAGTATTTCTTGCTGTGGGGAATTCATCATCCATGCTGGTGCTTGCAATCATAGTGCTGCTATTCAGCACCATAACGGTGATGACTTCACTGGTGGCTCTGTCATTCTACGGTGCAAGCCAGCTCAAGTTTCACTGGGTGGAGCGATATGACAAACTTCTTGTAGGGTCGGTGCTTTGTATGGTAGGAATTCTGACGTTTATTTTCCATGATCATGATCATGATCATGATGGAGGAGGTAGCACTGGGGGGCATTTGCATAGGAAAATCATCGGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

24.41

Weight (kDa)

6.92

Isoelectric Point (pI)

26.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21070
fragaria_vesca FvH4_3g27140 FvH4_3g27140
malus_domestica MD11G1180800.v1.1
prunus_persica Prupe.6G153600_v2.0.a1
pyrus_communis pycom11g15600
rosa_chinensis RchiOBHm_Chr5g0049761 RchiOBHm_Chr5g0049771
rosa_laevigata RLG00000034645
rosa_multiflora Rmu_sc0008923.1_g000002 Rmu_sc0015943.1_g000004 Rmu_sc0027409.1_g000001
rosa_roxburghii Rroxscaffold_1G00031700
rosa_rugosa Rorug05G0251000
rosa_samantha Rh5AG327000 Rh5BG338100 Rh5DG350300
rosa_wichuraiana Rw5G030890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 84, 343
AccI GTMKAC 1 cut(s) 29
AciI CCGC 4 cut(s) 133, 203, 282, 315
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 3 cut(s) 7, 430, 597
AdeI CACNNNGTG 1 cut(s) 547
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 3 cut(s) 84, 120, 343
AluBI AGCT 1 cut(s) 532
AluI AGCT 1 cut(s) 532
Alw26I GTCTC 1 cut(s) 393
AoxI GGCC 2 cut(s) 106, 682
ApeKI GCWGC 1 cut(s) 466
ApoI RAATTY 3 cut(s) 7, 430, 597
AspLEI GCGC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 499
BanII GRGCYC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 453
BccI CCATC 4 cut(s) 107, 230, 346, 632
BcgI CGANNNNNNTGC 4 cut(s) 36, 70, 124, 158
BclI TGATCA 3 cut(s) 619, 625, 631
BcoDI GTCTC 1 cut(s) 393
BfaI CTAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 18
BglII AGATCT 1 cut(s) 22
BisI GCNGC 1 cut(s) 467
BlsI GCNGC 1 cut(s) 468
BmiI GGNNCC 1 cut(s) 89
BmrI ACTGGG 2 cut(s) 553, 663
BmuI ACTGGG 2 cut(s) 553, 663
BpuEI CTTGAG 1 cut(s) 518
BsaBI GATNNNNATC 2 cut(s) 624, 630
BsaJI CCNNGG 1 cut(s) 342
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 120, 343
Bse1I ACTGG 4 cut(s) 410, 504, 548, 658
Bse8I GATNNNNATC 2 cut(s) 624, 630
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 1 cut(s) 437
BseJI GATNNNNATC 2 cut(s) 624, 630
BseLI CCNNNNNNNGG 3 cut(s) 84, 120, 343
BseNI ACTGG 4 cut(s) 410, 504, 548, 658
BseRI GAGGAG 1 cut(s) 657
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 453
Bsh1285I CGRYCG 2 cut(s) 36, 109
BshFI GGCC 2 cut(s) 108, 684
BsiEI CGRYCG 2 cut(s) 36, 109
BslI CCNNNNNNNGG 3 cut(s) 84, 120, 343
BsmAI GTCTC 1 cut(s) 393
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 2 cut(s) 108, 684
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 5 cut(s) 22, 33, 619, 625, 631
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 4 cut(s) 133, 203, 282, 315
BspANI GGCC 2 cut(s) 108, 684
BspHI TCATGA 3 cut(s) 622, 628, 634
BspLI GGNNCC 1 cut(s) 89
BsrI ACTGG 4 cut(s) 410, 504, 548, 658
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 5 cut(s) 22, 33, 619, 625, 631
BssT1I CCWWGG 1 cut(s) 342
Bst4CI ACNGT 5 cut(s) 52, 241, 323, 487, 521
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 4 cut(s) 229, 453, 526, 530
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 437
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 5 cut(s) 25, 36, 622, 628, 634
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 5 cut(s) 22, 33, 619, 625, 631
BstMCI CGRYCG 2 cut(s) 36, 109
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 453
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 2 cut(s) 108, 684
BtgI CCRYGG 1 cut(s) 342
BtgZI GCGATG 1 cut(s) 208
BtsCI GGATG 1 cut(s) 437
BtsI GCAGTG 2 cut(s) 147, 180
BtsIMutI CAGTG 5 cut(s) 147, 180, 497, 541, 651
Cac8I GCNNGC 4 cut(s) 229, 453, 526, 530
CciI TCATGA 3 cut(s) 622, 628, 634
CfoI GCGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 242
CviAII CATG 7 cut(s) 170, 343, 442, 617, 623, 629, 635
CviJI RGCY 8 cut(s) 88, 108, 113, 356, 506, 528, 532, 684
CviKI_1 RGCY 8 cut(s) 88, 108, 113, 356, 506, 528, 532, 684
CviQI GTAC 1 cut(s) 242
DpnI GATC 5 cut(s) 24, 35, 621, 627, 633
DpnII GATC 5 cut(s) 22, 33, 619, 625, 631
DraIII CACNNNGTG 1 cut(s) 547
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 115
Eco52I CGGCCG 1 cut(s) 106
EcoRI GAATTC 2 cut(s) 430, 597
EcoT14I CCWWGG 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 7 cut(s) 173, 346, 445, 620, 626, 632, 638
FatI CATG 7 cut(s) 169, 342, 441, 616, 622, 628, 634
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 3 cut(s) 619, 625, 631
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 467
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 467
FspBI CTAG 1 cut(s) 266
GlaI GCGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 467
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 2 cut(s) 108, 684
HhaI GCGC 1 cut(s) 17
Hin1II CATG 7 cut(s) 173, 346, 445, 620, 626, 632, 638
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 42, 124
HphI GGTGA 1 cut(s) 499
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 2 cut(s) 38, 603
Hpy188III TCNNGA 4 cut(s) 306, 623, 629, 635
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 2 cut(s) 34, 107
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 5 cut(s) 52, 241, 323, 487, 521
HpyCH4IV ACGT 1 cut(s) 605
HpyCH4V TGCA 9 cut(s) 64, 152, 169, 185, 383, 398, 455, 524, 667
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 605
Hsp92II CATG 7 cut(s) 173, 346, 445, 620, 626, 632, 638
HspAI GCGC 1 cut(s) 15
Ksp22I TGATCA 3 cut(s) 619, 625, 631
Kzo9I GATC 5 cut(s) 22, 33, 619, 625, 631
LmnI GCTCC 3 cut(s) 93, 158, 550
Lsp1109I GCAGC 1 cut(s) 453
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 605
MaeIII GTNAC 4 cut(s) 145, 205, 284, 317
MalI GATC 5 cut(s) 24, 35, 621, 627, 633
MboI GATC 5 cut(s) 22, 33, 619, 625, 631
MboII GAAGA 2 cut(s) 32, 133
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 3 cut(s) 7, 430, 597
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 5 cut(s) 32, 149, 226, 635, 638
MslI CAYNNNNRTG 5 cut(s) 446, 485, 621, 627, 633
MspA1I CMGCKG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 158
NcoI CCATGG 1 cut(s) 342
NdeII GATC 5 cut(s) 22, 33, 619, 625, 631
NlaIII CATG 7 cut(s) 173, 346, 445, 620, 626, 632, 638
NlaIV GGNNCC 1 cut(s) 89
NmeAIII GCCGAG 1 cut(s) 134
NmuCI GTSAC 3 cut(s) 145, 205, 317
NspI RCATGY 1 cut(s) 173
PagI TCATGA 3 cut(s) 622, 628, 634
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 42
PflMI CCANNNNNTGG 2 cut(s) 84, 343
PkrI GCNGC 1 cut(s) 468
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 22
PvuI CGATCG 1 cut(s) 36
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 5 cut(s) 446, 485, 621, 627, 633
SalI GTCGAC 1 cut(s) 28
SatI GCNGC 1 cut(s) 467
Sau3AI GATC 5 cut(s) 22, 33, 619, 625, 631
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 1 cut(s) 115
SetI ASST 4 cut(s) 196, 534, 608, 649
SmiMI CAYNNNNRTG 5 cut(s) 446, 485, 621, 627, 633
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 3 cut(s) 7, 430, 597
SsiI CCGC 4 cut(s) 133, 203, 282, 315
SspI AATATT 1 cut(s) 189
SspMI CTAG 1 cut(s) 266
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 5 cut(s) 52, 241, 323, 487, 521
TaiI ACGT 1 cut(s) 608
TaqI TCGA 1 cut(s) 29
TasI AATT 3 cut(s) 7, 430, 597
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 1 cut(s) 42
TscAI CASTG 5 cut(s) 154, 187, 504, 548, 658
TseFI GTSAC 3 cut(s) 145, 205, 317
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 3 cut(s) 145, 205, 317
TspDTI ATGAA 2 cut(s) 61, 423
TspRI CASTG 5 cut(s) 154, 187, 504, 548, 658
Van91I CCANNNNNTGG 2 cut(s) 84, 343
XapI RAATTY 3 cut(s) 7, 430, 597
XceI RCATGY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 29
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.