Rmu_sc0008923.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008923.1
OG0012991
Physical Location & Seq
Forward (+)
4229 .. 5974
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008923.1_g000002.1.cds

Sequence Viewer

Length: 483 bp
atggacaatttcagcgcagaagatctgtcaacgatcggaggcatcgcaacggtgtcgcttttgcattccttcatacccacgcattggctccctttctccatcgtcggccgcgcccagaaatggactctctcccgcactctcttcgtcactgcatttggagcagttttgcatgtaatatccacttcaatacttggtataacagcggtcaccatggcaaataccatcgctggcgaggaaacagttcataaacttgcctcacttttgctcgtatttcttggcggtggttacattgtgttgtttttaactggaaaaggtggtcacagtcattcacataaccaacccatggaaaaaatggctgttgctgggctcgtccttgttcctgccttgtctccttgtgcaaccacacttccggtatttcttgctgtcggcaattcatcttctatgatggtgcttgctatcatagtgctgctattcaggtattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

16.93

Weight (kDa)

8.01

Isoelectric Point (pI)

25.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21070
fragaria_vesca FvH4_3g27140 FvH4_3g27140
malus_domestica MD11G1180800.v1.1
prunus_persica Prupe.6G153600_v2.0.a1
pyrus_communis pycom11g15600
rosa_chinensis RchiOBHm_Chr5g0049761 RchiOBHm_Chr5g0049771
rosa_laevigata RLG00000034645
rosa_multiflora Rmu_sc0008923.1_g000002 Rmu_sc0015943.1_g000004 Rmu_sc0027409.1_g000001
rosa_roxburghii Rroxscaffold_1G00031700
rosa_rugosa Rorug05G0251000
rosa_samantha Rh5AG327000 Rh5BG338100 Rh5DG350300
rosa_wichuraiana Rw5G030890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 84, 343
AccII CGCG 1 cut(s) 111
AciI CCGC 4 cut(s) 109, 133, 203, 279
AcoI YGGCCR 1 cut(s) 106
AfiI CCNNNNNNNGG 3 cut(s) 84, 120, 343
AgsI TTSAA 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 393
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 466
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 2 cut(s) 17, 113
AsuHPI GGTGA 1 cut(s) 199
BanII GRGCYC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 453
BccI CCATC 3 cut(s) 107, 230, 439
BcgI CGANNNNNNTGC 4 cut(s) 36, 70, 124, 158
BcoDI GTCTC 1 cut(s) 393
BglII AGATCT 1 cut(s) 22
BisI GCNGC 2 cut(s) 109, 467
BlsI GCNGC 2 cut(s) 110, 468
BmiI GGNNCC 1 cut(s) 89
BmsI GCATC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 210, 342
BsaWI WCCGGW 1 cut(s) 409
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 120, 343
Bse1I ACTGG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 210, 342
BseLI CCNNNNNNNGG 3 cut(s) 84, 120, 343
BseNI ACTGG 1 cut(s) 310
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 453
BseYI CCCAGC 1 cut(s) 362
Bsh1236I CGCG 1 cut(s) 111
Bsh1285I CGRYCG 2 cut(s) 36, 109
BshFI GGCC 1 cut(s) 108
BsiEI CGRYCG 2 cut(s) 36, 109
BsiSI CCGG 1 cut(s) 410
BslI CCNNNNNNNGG 3 cut(s) 84, 120, 343
BsmAI GTCTC 1 cut(s) 393
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 2 cut(s) 22, 33
Bsp19I CCATGG 2 cut(s) 210, 342
BspACI CCGC 4 cut(s) 109, 133, 203, 279
BspANI GGCC 1 cut(s) 108
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 89
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 210, 342
BssMI GATC 2 cut(s) 22, 33
BssT1I CCWWGG 2 cut(s) 210, 342
Bst4CI ACNGT 3 cut(s) 52, 241, 323
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 229, 453
BstDSI CCRYGG 2 cut(s) 210, 342
BstEII GGTNACC 1 cut(s) 205
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 2 cut(s) 17, 113
BstKTI GATC 2 cut(s) 25, 36
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 2 cut(s) 22, 33
BstMCI CGRYCG 2 cut(s) 36, 109
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 173
BstPI GGTNACC 1 cut(s) 205
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 453
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 2 cut(s) 210, 342
BtgZI GCGATG 2 cut(s) 28, 208
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 229, 453
CfoI GCGC 2 cut(s) 17, 113
CviAII CATG 3 cut(s) 170, 211, 343
CviJI RGCY 4 cut(s) 88, 108, 356, 367
CviKI_1 RGCY 4 cut(s) 88, 108, 356, 367
DpnI GATC 2 cut(s) 24, 35
DpnII GATC 2 cut(s) 22, 33
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 210, 342
Eco24I GRGCYC 1 cut(s) 369
Eco52I CGGCCG 1 cut(s) 106
Eco91I GGTNACC 1 cut(s) 205
EcoO65I GGTNACC 1 cut(s) 205
EcoT14I CCWWGG 2 cut(s) 210, 342
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 2 cut(s) 210, 342
FaeI CATG 3 cut(s) 173, 214, 346
FaiI YATR 9 cut(s) 74, 171, 197, 212, 246, 333, 344, 443, 461
FatI CATG 3 cut(s) 169, 210, 342
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 2 cut(s) 109, 467
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 109, 467
GlaI GCGC 2 cut(s) 16, 112
GluI GCNGC 2 cut(s) 109, 467
GsaI CCCAGC 1 cut(s) 366
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 410
HhaI GCGC 2 cut(s) 17, 113
Hin1II CATG 3 cut(s) 173, 214, 346
Hin6I GCGC 2 cut(s) 15, 111
HinP1I GCGC 2 cut(s) 15, 111
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 1 cut(s) 124
HpaII CCGG 1 cut(s) 410
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 3 cut(s) 52, 241, 323
HpyCH4V TGCA 4 cut(s) 64, 152, 169, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92II CATG 3 cut(s) 173, 214, 346
HspAI GCGC 2 cut(s) 15, 111
Kzo9I GATC 2 cut(s) 22, 33
LmnI GCTCC 2 cut(s) 93, 158
LpnPI CCDG 7 cut(s) 128, 213, 291, 348, 393, 423, 460
Lsp1109I GCAGC 1 cut(s) 453
LweI GCATC 1 cut(s) 51
MaeIII GTNAC 4 cut(s) 145, 205, 284, 317
MalI GATC 2 cut(s) 24, 35
MboI GATC 2 cut(s) 22, 33
MboII GAAGA 3 cut(s) 32, 133, 429
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 2 cut(s) 7, 430
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 3 cut(s) 32, 226, 265
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 2 cut(s) 302, 481
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 64
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 158
NcoI CCATGG 2 cut(s) 210, 342
NdeII GATC 2 cut(s) 22, 33
NlaIII CATG 3 cut(s) 173, 214, 346
NlaIV GGNNCC 1 cut(s) 89
NmuCI GTSAC 3 cut(s) 145, 205, 317
NspI RCATGY 1 cut(s) 173
PctI GAATGC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 240
PflMI CCANNNNNTGG 2 cut(s) 84, 343
PkrI GCNGC 2 cut(s) 110, 468
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 362
PspN4I GGNNCC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 22
PvuI CGATCG 1 cut(s) 36
SaqAI TTAA 2 cut(s) 302, 481
SatI GCNGC 2 cut(s) 109, 467
Sau3AI GATC 2 cut(s) 22, 33
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 1 cut(s) 369
SetI ASST 2 cut(s) 316, 479
SfaNI GCATC 1 cut(s) 51
Sse9I AATT 2 cut(s) 7, 430
SsiI CCGC 4 cut(s) 109, 133, 203, 279
StyI CCWWGG 2 cut(s) 210, 342
TaaI ACNGT 3 cut(s) 52, 241, 323
TasI AATT 2 cut(s) 7, 430
TauI GCSGC 1 cut(s) 111
Tru1I TTAA 2 cut(s) 302, 481
Tru9I TTAA 2 cut(s) 302, 481
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 3 cut(s) 145, 205, 317
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 3 cut(s) 145, 205, 317
TspDTI ATGAA 3 cut(s) 61, 233, 423
TspRI CASTG 1 cut(s) 154
Van91I CCANNNNNTGG 2 cut(s) 84, 343
XceI RCATGY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.