pycom11g15600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012991
Physical Location & Seq
Reverse (-)
16352530 .. 16355469
2940 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g15600.2

Sequence Viewer

Length: 684 bp
ATGGAAAATTTCAGCGCCGAAGATCTGTCGACGATCGGAGGAATCGCAACCGTATCGCTTCTGCATTCCTTCATACCCACGCATTGGCTCCCGTTCTCCATCGTCGGCCGAGCCCAGAAATGGACTCTCTCCCGCACCCTCTTCGTCACTGCATTTGGAGCAGTCTTGCATGTAATATCCACTGCAATATTAGGTATAACAGCGGTCACAATGGCAAACACCATCGCCGGCGAGGAAACAGTACATAAACTTGCTTCACTTCTGCTTGTATTTCTCGGTGTCGGTTACATTTTGTTGTTTTTATCTGGAAAAGGCGGTCACAGTCATTCACACAACCAACCCATGGAAAAGATGGCTGTTGCTGGACTTGTCCTTGTTCCTGCATTGTCTCCTTGTGCAACTACACTTCCAGTATTTCTTGCTGTGGGGAATTCATCATCCATGCTGGTGCTTGCTATCATAGTGTTGCTATTCAGCACCATAACGGTGATGACTTCACTGGTGGCTCTGTCATTCTACGGTGCAAGCCAGCTCAAGTTTCACTGGGTGGAGCGATATGACAAACCTCTTGTAGGGTCGGTGCTTTGTATGGTAGGAATTCTGACGCTTATTTTCCATGACCATGATCATGATGGAGGAGGTAGCACTGGGGGGCATTTGCATAGGAAAATCAGTGGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.13

Weight (kDa)

7.24

Isoelectric Point (pI)

24.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21070
fragaria_vesca FvH4_3g27140 FvH4_3g27140
malus_domestica MD11G1180800.v1.1
prunus_persica Prupe.6G153600_v2.0.a1
pyrus_communis pycom11g15600
rosa_chinensis RchiOBHm_Chr5g0049761 RchiOBHm_Chr5g0049771
rosa_laevigata RLG00000034645
rosa_multiflora Rmu_sc0008923.1_g000002 Rmu_sc0015943.1_g000004 Rmu_sc0027409.1_g000001
rosa_roxburghii Rroxscaffold_1G00031700
rosa_rugosa Rorug05G0251000
rosa_samantha Rh5AG327000 Rh5BG338100 Rh5DG350300
rosa_wichuraiana Rw5G030890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 84, 343
AccI GTMKAC 1 cut(s) 29
AciI CCGC 3 cut(s) 133, 203, 315
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 3 cut(s) 7, 430, 597
AdeI CACNNNGTG 1 cut(s) 547
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 4 cut(s) 84, 120, 343, 572
AluBI AGCT 1 cut(s) 532
AluI AGCT 1 cut(s) 532
Alw26I GTCTC 1 cut(s) 393
AoxI GGCC 2 cut(s) 106, 676
ApoI RAATTY 3 cut(s) 7, 430, 597
AspLEI GCGC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 499
BanII GRGCYC 1 cut(s) 115
BccI CCATC 4 cut(s) 107, 230, 346, 626
BcgI CGANNNNNNTGC 4 cut(s) 36, 70, 124, 158
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 1 cut(s) 393
BfoI RGCGCY 1 cut(s) 18
BglII AGATCT 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 89
BmrI ACTGGG 2 cut(s) 553, 657
BmuI ACTGGG 2 cut(s) 553, 657
BpuEI CTTGAG 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 342
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 120, 343, 572
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 4 cut(s) 410, 504, 548, 652
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 1 cut(s) 437
BseLI CCNNNNNNNGG 4 cut(s) 84, 120, 343, 572
BseNI ACTGG 4 cut(s) 410, 504, 548, 652
BseRI GAGGAG 1 cut(s) 651
BseX3I CGGCCG 1 cut(s) 106
Bsh1285I CGRYCG 2 cut(s) 36, 109
BshFI GGCC 2 cut(s) 108, 678
BsiEI CGRYCG 2 cut(s) 36, 109
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 4 cut(s) 84, 120, 343, 572
BsmAI GTCTC 1 cut(s) 393
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 2 cut(s) 108, 678
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 3 cut(s) 22, 33, 625
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 3 cut(s) 133, 203, 315
BspANI GGCC 2 cut(s) 108, 678
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 4 cut(s) 410, 504, 548, 652
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 3 cut(s) 22, 33, 625
BssT1I CCWWGG 1 cut(s) 342
Bst4CI ACNGT 5 cut(s) 52, 241, 323, 487, 521
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 4 cut(s) 229, 453, 526, 530
BstDSI CCRYGG 1 cut(s) 342
BstENI CCTNNNNNAGG 1 cut(s) 570
BstF5I GGATG 1 cut(s) 437
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 3 cut(s) 25, 36, 628
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 3 cut(s) 22, 33, 625
BstMCI CGRYCG 2 cut(s) 36, 109
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 2 cut(s) 108, 678
BtgI CCRYGG 1 cut(s) 342
BtgZI GCGATG 1 cut(s) 208
BtsCI GGATG 1 cut(s) 437
BtsI GCAGTG 2 cut(s) 147, 180
BtsIMutI CAGTG 6 cut(s) 147, 180, 497, 541, 645, 679
Cac8I GCNNGC 4 cut(s) 229, 453, 526, 530
CciI TCATGA 1 cut(s) 628
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 227
CseI GACGC 1 cut(s) 613
Csp6I GTAC 1 cut(s) 242
CviAII CATG 6 cut(s) 170, 343, 442, 617, 623, 629
CviJI RGCY 8 cut(s) 88, 108, 113, 356, 506, 528, 532, 678
CviKI_1 RGCY 8 cut(s) 88, 108, 113, 356, 506, 528, 532, 678
CviQI GTAC 1 cut(s) 242
DpnI GATC 3 cut(s) 24, 35, 627
DpnII GATC 3 cut(s) 22, 33, 625
DraIII CACNNNGTG 1 cut(s) 547
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 115
Eco52I CGGCCG 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 570
EcoRI GAATTC 2 cut(s) 430, 597
EcoT14I CCWWGG 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 6 cut(s) 173, 346, 445, 620, 626, 632
FatI CATG 6 cut(s) 169, 342, 441, 616, 622, 628
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 1 cut(s) 625
FblI GTMKAC 1 cut(s) 29
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 1 cut(s) 115
GlaI GCGC 1 cut(s) 16
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 2 cut(s) 108, 678
HapII CCGG 1 cut(s) 228
HgaI GACGC 1 cut(s) 613
HhaI GCGC 1 cut(s) 17
Hin1II CATG 6 cut(s) 173, 346, 445, 620, 626, 632
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 42, 124
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 499
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 2 cut(s) 38, 603
Hpy188III TCNNGA 2 cut(s) 306, 629
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 2 cut(s) 34, 107
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 5 cut(s) 52, 241, 323, 487, 521
HpyCH4V TGCA 8 cut(s) 64, 152, 169, 185, 383, 398, 524, 661
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92II CATG 6 cut(s) 173, 346, 445, 620, 626, 632
HspAI GCGC 1 cut(s) 15
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 3 cut(s) 22, 33, 625
LmnI GCTCC 3 cut(s) 93, 158, 550
MaeIII GTNAC 4 cut(s) 145, 205, 284, 317
MalI GATC 3 cut(s) 24, 35, 627
MboI GATC 3 cut(s) 22, 33, 625
MboII GAAGA 2 cut(s) 32, 133
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 3 cut(s) 7, 430, 597
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 6 cut(s) 32, 149, 226, 576, 629, 632
MreI CGCCGGCG 1 cut(s) 227
MroNI GCCGGC 1 cut(s) 227
MslI CAYNNNNRTG 4 cut(s) 446, 485, 621, 627
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 158
NaeI GCCGGC 1 cut(s) 229
NcoI CCATGG 1 cut(s) 342
NdeII GATC 3 cut(s) 22, 33, 625
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 6 cut(s) 173, 346, 445, 620, 626, 632
NlaIV GGNNCC 1 cut(s) 89
NmeAIII GCCGAG 1 cut(s) 134
NmuCI GTSAC 3 cut(s) 145, 205, 317
NspI RCATGY 1 cut(s) 173
PagI TCATGA 1 cut(s) 628
PctI GAATGC 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 42
PflMI CCANNNNNTGG 2 cut(s) 84, 343
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 22
PvuI CGATCG 1 cut(s) 36
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 4 cut(s) 446, 485, 621, 627
SalI GTCGAC 1 cut(s) 28
Sau3AI GATC 3 cut(s) 22, 33, 625
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 1 cut(s) 115
SetI ASST 4 cut(s) 196, 534, 568, 643
SgrAI CRCCGGYG 1 cut(s) 227
SmiMI CAYNNNNRTG 4 cut(s) 446, 485, 621, 627
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 3 cut(s) 7, 430, 597
SsiI CCGC 3 cut(s) 133, 203, 315
SspI AATATT 1 cut(s) 189
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 5 cut(s) 52, 241, 323, 487, 521
TaqI TCGA 1 cut(s) 29
TasI AATT 3 cut(s) 7, 430, 597
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 1 cut(s) 42
TscAI CASTG 6 cut(s) 154, 187, 504, 548, 652, 679
TseFI GTSAC 3 cut(s) 145, 205, 317
Tsp45I GTSAC 3 cut(s) 145, 205, 317
TspDTI ATGAA 2 cut(s) 61, 423
TspRI CASTG 6 cut(s) 154, 187, 504, 548, 652, 679
Van91I CCANNNNNTGG 2 cut(s) 84, 343
XagI CCTNNNNNAGG 1 cut(s) 570
XapI RAATTY 3 cut(s) 7, 430, 597
XceI RCATGY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 2 cut(s) 349, 629
XmiI GTMKAC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.