Rroxscaffold_1G00031700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012991
Physical Location & Seq
Forward (+)
44954891 .. 44958105
3215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031700.1

Sequence Viewer

Length: 687 bp
ATGGACAATTTCAGCGCAGAAGATCTGTCAACGATCGGAGGCATCGCAACGGTGTCGCTTTTGCATTCCTTCATACCCACGCATTGGCTCCCTTTCTCCATCGTCGGCCGCGCCCAGAAATGGACTCTCTCCCGCACTCTCTTCGTCACTGCATTTGGAGCAGTTTTGCATGTAATATCCACTTCAATACTTGGTATAACAGCGGTCACCATGGCAAATACCATCGCTGGCGAGGAAACAGTTCATAAACTTGCCTCACTTTTGCTTGTATTTCTTGGCGGTGGTTACATTTTGTTGTTTTTAACTGGAAAAGGTGGTCACAGTCATTCACATAACCAACCCATGGAAAAAATGGCTGTTGCTGGGCTCGTCCTTGTTCCTGCCTTGTCTCCTTGTGCAACCACACTTCCAGTATTTCTTGCTGTCGGCAATTCATCTTCTATGATGGTGCTTGCTATCATAGTGCTGCTATTCAGCACCATAACAGTGATGACTTCTTTGGTTGCTCTCTCATTCTATGGTGCCAGCCAGCTCAAATTTCACTGGGTGGAGCGATATGACAAACTTCTTGTAGGATCTGTGCTCTGTTTGGTGGGAATTTTGACACTTATTTTTCATGATCATGATCATGATGGAGCAGGAGGATCCACTGGAGAGCATTTGCATAGGAAAATCATTGTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.35

Weight (kDa)

6.92

Isoelectric Point (pI)

22.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21070
fragaria_vesca FvH4_3g27140 FvH4_3g27140
malus_domestica MD11G1180800.v1.1
prunus_persica Prupe.6G153600_v2.0.a1
pyrus_communis pycom11g15600
rosa_chinensis RchiOBHm_Chr5g0049761 RchiOBHm_Chr5g0049771
rosa_laevigata RLG00000034645
rosa_multiflora Rmu_sc0008923.1_g000002 Rmu_sc0015943.1_g000004 Rmu_sc0027409.1_g000001
rosa_roxburghii Rroxscaffold_1G00031700
rosa_rugosa Rorug05G0251000
rosa_samantha Rh5AG327000 Rh5BG338100 Rh5DG350300
rosa_wichuraiana Rw5G030890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 521
AccB7I CCANNNNNTGG 2 cut(s) 84, 343
AccII CGCG 1 cut(s) 111
AciI CCGC 4 cut(s) 109, 133, 203, 279
AclWI GGATC 3 cut(s) 583, 639, 652
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 2 cut(s) 536, 597
AdeI CACNNNGTG 1 cut(s) 547
AfiI CCNNNNNNNGG 3 cut(s) 84, 120, 343
AgsI TTSAA 1 cut(s) 186
AluBI AGCT 1 cut(s) 532
AluI AGCT 1 cut(s) 532
Alw21I GWGCWC 1 cut(s) 585
Alw26I GTCTC 1 cut(s) 393
AlwI GGATC 3 cut(s) 583, 639, 652
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 466
ApoI RAATTY 2 cut(s) 536, 597
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 2 cut(s) 17, 113
AsuHPI GGTGA 1 cut(s) 199
BamHI GGATCC 1 cut(s) 644
BanI GGYRCC 1 cut(s) 521
BanII GRGCYC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 585
BbvI GCAGC 1 cut(s) 453
BccI CCATC 4 cut(s) 107, 230, 439, 626
BcgI CGANNNNNNTGC 4 cut(s) 36, 70, 124, 158
BclI TGATCA 2 cut(s) 619, 625
BcoDI GTCTC 1 cut(s) 393
BglII AGATCT 1 cut(s) 22
BisI GCNGC 2 cut(s) 109, 467
BlsI GCNGC 2 cut(s) 110, 468
BmiI GGNNCC 3 cut(s) 89, 523, 646
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 553
BpmI CTGGAG 1 cut(s) 672
BsaBI GATNNNNATC 1 cut(s) 624
BsaJI CCNNGG 2 cut(s) 210, 342
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 120, 343
Bse1I ACTGG 4 cut(s) 310, 410, 548, 655
Bse8I GATNNNNATC 1 cut(s) 624
BseDI CCNNGG 2 cut(s) 210, 342
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 3 cut(s) 84, 120, 343
BseNI ACTGG 4 cut(s) 310, 410, 548, 655
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 453
BseYI CCCAGC 1 cut(s) 362
Bsh1236I CGCG 1 cut(s) 111
Bsh1285I CGRYCG 2 cut(s) 36, 109
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 521
BsiEI CGRYCG 2 cut(s) 36, 109
BsiHKAI GWGCWC 1 cut(s) 585
BslI CCNNNNNNNGG 3 cut(s) 84, 120, 343
BsmAI GTCTC 1 cut(s) 393
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 369, 585
Bsp143I GATC 6 cut(s) 22, 33, 575, 619, 625, 644
Bsp19I CCATGG 2 cut(s) 210, 342
BspACI CCGC 4 cut(s) 109, 133, 203, 279
BspANI GGCC 1 cut(s) 108
BspFNI CGCG 1 cut(s) 111
BspHI TCATGA 3 cut(s) 616, 622, 628
BspLI GGNNCC 3 cut(s) 89, 523, 646
BspPI GGATC 3 cut(s) 583, 639, 652
BspT107I GGYRCC 1 cut(s) 521
BsrI ACTGG 4 cut(s) 310, 410, 548, 655
BssECI CCNNGG 2 cut(s) 210, 342
BssMI GATC 6 cut(s) 22, 33, 575, 619, 625, 644
BssT1I CCWWGG 2 cut(s) 210, 342
Bst4CI ACNGT 4 cut(s) 52, 241, 323, 487
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 4 cut(s) 229, 453, 526, 530
BstDSI CCRYGG 2 cut(s) 210, 342
BstEII GGTNACC 1 cut(s) 205
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 2 cut(s) 17, 113
BstKTI GATC 6 cut(s) 25, 36, 578, 622, 628, 647
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 6 cut(s) 22, 33, 575, 619, 625, 644
BstMCI CGRYCG 2 cut(s) 36, 109
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 173
BstPI GGTNACC 1 cut(s) 205
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 453
BstX2I RGATCY 3 cut(s) 22, 575, 644
BstYI RGATCY 3 cut(s) 22, 575, 644
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 2 cut(s) 210, 342
BtgZI GCGATG 2 cut(s) 28, 208
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 5 cut(s) 147, 492, 541, 648, 682
Cac8I GCNNGC 4 cut(s) 229, 453, 526, 530
CciI TCATGA 3 cut(s) 616, 622, 628
CfoI GCGC 2 cut(s) 17, 113
CviAII CATG 6 cut(s) 170, 211, 343, 617, 623, 629
CviJI RGCY 6 cut(s) 88, 108, 356, 367, 528, 532
CviKI_1 RGCY 6 cut(s) 88, 108, 356, 367, 528, 532
DpnI GATC 6 cut(s) 24, 35, 577, 621, 627, 646
DpnII GATC 6 cut(s) 22, 33, 575, 619, 625, 644
DraIII CACNNNGTG 1 cut(s) 547
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 210, 342
Eco24I GRGCYC 1 cut(s) 369
Eco52I CGGCCG 1 cut(s) 106
Eco91I GGTNACC 1 cut(s) 205
EcoO65I GGTNACC 1 cut(s) 205
EcoT14I CCWWGG 2 cut(s) 210, 342
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 2 cut(s) 210, 342
FaeI CATG 6 cut(s) 173, 214, 346, 620, 626, 632
FatI CATG 6 cut(s) 169, 210, 342, 616, 622, 628
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 2 cut(s) 619, 625
Fnu4HI GCNGC 2 cut(s) 109, 467
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 109, 467
GlaI GCGC 2 cut(s) 16, 112
GluI GCNGC 2 cut(s) 109, 467
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 1 cut(s) 108
HhaI GCGC 2 cut(s) 17, 113
Hin1II CATG 6 cut(s) 173, 214, 346, 620, 626, 632
Hin6I GCGC 2 cut(s) 15, 111
HinP1I GCGC 2 cut(s) 15, 111
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 1 cut(s) 124
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 30, 682
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 3 cut(s) 617, 623, 629
Hpy8I GTNNAC 2 cut(s) 30, 682
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 4 cut(s) 52, 241, 323, 487
HpyCH4V TGCA 5 cut(s) 64, 152, 169, 398, 664
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92II CATG 6 cut(s) 173, 214, 346, 620, 626, 632
HspAI GCGC 2 cut(s) 15, 111
Ksp22I TGATCA 2 cut(s) 619, 625
Kzo9I GATC 6 cut(s) 22, 33, 575, 619, 625, 644
LmnI GCTCC 4 cut(s) 93, 158, 550, 635
Lsp1109I GCAGC 1 cut(s) 453
LweI GCATC 1 cut(s) 51
MaeIII GTNAC 4 cut(s) 145, 205, 284, 317
MalI GATC 6 cut(s) 24, 35, 577, 621, 627, 646
MboI GATC 6 cut(s) 22, 33, 575, 619, 625, 644
MboII GAAGA 3 cut(s) 32, 133, 429
MflI RGATCY 3 cut(s) 22, 575, 644
MhlI GDGCHC 2 cut(s) 369, 585
MluCI AATT 4 cut(s) 7, 430, 536, 597
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 4 cut(s) 32, 226, 265, 635
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 3 cut(s) 485, 621, 627
MspA1I CMGCKG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 64
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 158
NcoI CCATGG 2 cut(s) 210, 342
NdeII GATC 6 cut(s) 22, 33, 575, 619, 625, 644
NlaIII CATG 6 cut(s) 173, 214, 346, 620, 626, 632
NlaIV GGNNCC 3 cut(s) 89, 523, 646
NmuCI GTSAC 3 cut(s) 145, 205, 317
NspI RCATGY 1 cut(s) 173
PagI TCATGA 3 cut(s) 616, 622, 628
PctI GAATGC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 240
PflMI CCANNNNNTGG 2 cut(s) 84, 343
PkrI GCNGC 2 cut(s) 110, 468
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 362
PspN4I GGNNCC 3 cut(s) 89, 523, 646
PsuI RGATCY 3 cut(s) 22, 575, 644
PvuI CGATCG 1 cut(s) 36
RseI CAYNNNNRTG 3 cut(s) 485, 621, 627
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 2 cut(s) 109, 467
Sau3AI GATC 6 cut(s) 22, 33, 575, 619, 625, 644
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 2 cut(s) 369, 585
SetI ASST 2 cut(s) 316, 534
SfaNI GCATC 1 cut(s) 51
SmiMI CAYNNNNRTG 3 cut(s) 485, 621, 627
Sse9I AATT 4 cut(s) 7, 430, 536, 597
SsiI CCGC 4 cut(s) 109, 133, 203, 279
StyI CCWWGG 2 cut(s) 210, 342
TaaI ACNGT 4 cut(s) 52, 241, 323, 487
TasI AATT 4 cut(s) 7, 430, 536, 597
TauI GCSGC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 4 cut(s) 154, 492, 548, 655
TseFI GTSAC 3 cut(s) 145, 205, 317
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 3 cut(s) 145, 205, 317
TspDTI ATGAA 4 cut(s) 61, 233, 423, 605
TspRI CASTG 4 cut(s) 154, 492, 548, 655
Van91I CCANNNNNTGG 2 cut(s) 84, 343
XapI RAATTY 2 cut(s) 536, 597
XceI RCATGY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.