Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014099

Physical Location & Seq

Genomic Coordinates Forward (+)

7222179 .. 7223639

Gene Structure 1461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G21430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCTTCCTTATCGACGATAACTCAACCATCTTTAGTCCACATTCCCGGTGAATCAGTCCTCCATCACGTACCAAGCACGTGCTCTTTCCCATGGAAGCCAACTATCAACACGAAGCGGATTATCTGTTCGCCGGCTAGGAACTCCAGCGAAGTATCGGCGGAGGCAGAAACCGAAGGTGGATCTAGCACCGCCGTTGATGAAGCACCGAAAGAGTCTCCATCTTTAATATCCGCTCTCAACGTCGAACGCGCGCTACGTGGCCTTCCAATTACAGATGTTGATCATTATGGACGGCTTGGGATTTTCAGAAATTGTTCTTATGATCAGGTTACAATTGGTTACAAAGAAAGAGTTAAAGAGTTGAAGGAACAAGGACTAGATGAAGAACAACTCAAGACCAAGATGGATCTTATCAAAGAGTCATATACGATATTGTCGACCGTGGAAGAGAGAAGAATGTACGATTGGAGTCTAGCAAGAAGCGAAAAAGCAGAACGGTACGTGTGGCCATTTGAGGTTGACATCATGGAACCATCCAGGGAAGAGCCACCTCCTCAGGAACCGGAAGATGTAGGACCAACGAGGATTTTGGGATACTTCATTGGAGCATGGCTTGTCCTTGGTGTTGCTCTTTCGGTTGCGTTCAATCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0010598 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

218

Amino Acids

24.44

Weight (kDa)

5.07

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21430 AT5G21430
fragaria_vesca	FvH4_2g31130
malus_domestica	MD15G1051600.v1.1
prunus_persica	Prupe.1G405600_v2.0.a1 Prupe.1G405600_v2.0.a1
pyrus_communis	pycom15g04940
rosa_chinensis	RchiOBHm_Chr6g0311651
rosa_laevigata	RLG00000010384
rosa_multiflora	Rmu_sc0002888.1_g000007
rosa_roxburghii	Rroxscaffold_7G00157410
rosa_rugosa	Rorug06G0390300
rosa_samantha	Rh6AG505600 Rh6BG516400 Rh6CG522300 Rh6DG508100
rosa_wichuraiana	Rw6G044010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	440
AccII	CGCG	2 cut(s)	252, 254
AciI	CCGC	4 cut(s)	118, 161, 192, 234
AclWI	GGATC	2 cut(s)	190, 417
AcoI	YGGCCR	1 cut(s)	509
AcvI	CACGTG	1 cut(s)	81
AfaI	GTAC	3 cut(s)	72, 464, 503
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	2 cut(s)	367, 649
AjnI	CCWGG	1 cut(s)	539
AjuI	GAANNNNNNNTTGG	2 cut(s)	451, 483
AloI	GAACNNNNNNTCC	2 cut(s)	112, 144
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	190, 417
AoxI	GGCC	2 cut(s)	262, 509
Asp700I	GAANNNNTTC	1 cut(s)	316
AspLEI	GCGC	2 cut(s)	254, 256
AspS9I	GGNCC	1 cut(s)	578
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	578
AxyI	CCTNAGG	1 cut(s)	558
BalI	TGGCCA	1 cut(s)	511
BbrPI	CACGTG	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	86
BccI	CCATC	5 cut(s)	37, 72, 229, 400, 544
BceAI	ACGGC	2 cut(s)	179, 311
BciT130I	CCWGG	1 cut(s)	541
BciVI	GTATCC	1 cut(s)	590
BclI	TGATCA	2 cut(s)	283, 325
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	4 cut(s)	138, 186, 380, 476
BfuI	GTATCC	1 cut(s)	590
Bme1390I	CCNGG	2 cut(s)	48, 541
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	534, 564
BmrFI	CCNGG	2 cut(s)	48, 541
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	48
BsaAI	YACGTR	4 cut(s)	70, 81, 260, 505
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	4 cut(s)	92, 444, 540, 622
BsaWI	WCCGGW	1 cut(s)	565
Bse118I	RCCGGY	1 cut(s)	133
Bse21I	CCTNAGG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	541
BseDI	CCNNGG	4 cut(s)	92, 444, 540, 622
BseGI	GGATG	1 cut(s)	536
BseJI	GATNNNNATC	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	572
BsePI	GCGCGC	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	546
Bsh1236I	CGCG	2 cut(s)	252, 254
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	2 cut(s)	264, 511
BsiEI	CGRYCG	1 cut(s)	444
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	3 cut(s)	48, 134, 566
BsmAI	GTCTC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	264, 511
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	182, 283, 325, 409
Bsp19I	CCATGG	1 cut(s)	92
BspACI	CCGC	4 cut(s)	118, 161, 192, 234
BspANI	GGCC	2 cut(s)	264, 511
BspCNI	CTCAG	1 cut(s)	571
BspFNI	CGCG	2 cut(s)	252, 254
BspLI	GGNNCC	2 cut(s)	534, 564
BspPI	GGATC	2 cut(s)	190, 417
BspQI	GCTCTTC	1 cut(s)	540
BsrBI	CCGCTC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	4 cut(s)	92, 444, 540, 622
BssHII	GCGCGC	1 cut(s)	252
BssMI	GATC	4 cut(s)	182, 283, 325, 409
BssT1I	CCWWGG	2 cut(s)	92, 622
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	2 cut(s)	445, 501
Bst6I	CTCTTC	2 cut(s)	444, 540
BstBAI	YACGTR	4 cut(s)	70, 81, 260, 505
BstC8I	GCNNGC	2 cut(s)	135, 254
BstDEI	CTNAG	1 cut(s)	558
BstDSI	CCRYGG	2 cut(s)	92, 444
BstF5I	GGATG	1 cut(s)	536
BstFNI	CGCG	2 cut(s)	252, 254
BstHHI	GCGC	2 cut(s)	254, 256
BstKTI	GATC	4 cut(s)	185, 286, 328, 412
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	4 cut(s)	182, 283, 325, 409
BstMCI	CGRYCG	1 cut(s)	444
BstNI	CCWGG	1 cut(s)	541
BstSCI	CCNGG	2 cut(s)	46, 539
BstUI	CGCG	2 cut(s)	252, 254
BstX2I	RGATCY	2 cut(s)	182, 409
BstYI	RGATCY	2 cut(s)	182, 409
Bsu36I	CCTNAGG	1 cut(s)	558
BsuI	GTATCC	1 cut(s)	590
BsuRI	GGCC	2 cut(s)	264, 511
BtgI	CCRYGG	2 cut(s)	92, 444
BtsCI	GGATG	1 cut(s)	536
Cac8I	GCNNGC	2 cut(s)	135, 254
CfoI	GCGC	2 cut(s)	254, 256
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	578
Csp6I	GTAC	3 cut(s)	71, 463, 502
CviAII	CATG	3 cut(s)	93, 529, 612
CviJI	RGCY	8 cut(s)	5, 100, 137, 264, 298, 511, 550, 616
CviKI_1	RGCY	8 cut(s)	5, 100, 137, 264, 298, 511, 550, 616
CviQI	GTAC	3 cut(s)	71, 463, 502
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	4 cut(s)	184, 285, 327, 411
DpnII	GATC	4 cut(s)	182, 283, 325, 409
EaeI	YGGCCR	1 cut(s)	509
Eam1104I	CTCTTC	2 cut(s)	444, 540
EarI	CTCTTC	2 cut(s)	444, 540
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	92, 622
Eco47I	GGWCC	1 cut(s)	578
Eco72I	CACGTG	1 cut(s)	81
Eco81I	CCTNAGG	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	539
EcoT14I	CCWWGG	2 cut(s)	92, 622
ErhI	CCWWGG	2 cut(s)	92, 622
FaeI	CATG	3 cut(s)	96, 532, 615
FaiI	YATR	7 cut(s)	94, 291, 324, 427, 429, 530, 613
FatI	CATG	3 cut(s)	92, 528, 611
FbaI	TGATCA	2 cut(s)	283, 325
FblI	GTMKAC	1 cut(s)	440
FokI	GGATG	1 cut(s)	523
FspBI	CTAG	4 cut(s)	138, 186, 380, 476
GlaI	GCGC	2 cut(s)	253, 255
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	264, 511
HapII	CCGG	3 cut(s)	48, 134, 566
HhaI	GCGC	2 cut(s)	254, 256
Hin1II	CATG	3 cut(s)	96, 532, 615
Hin6I	GCGC	2 cut(s)	252, 254
HinP1I	GCGC	2 cut(s)	252, 254
HincII	GTYRAC	2 cut(s)	441, 523
HindII	GTYRAC	2 cut(s)	441, 523
HinfI	GANTC	4 cut(s)	53, 215, 422, 472
HpaII	CCGG	3 cut(s)	48, 134, 566
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	3 cut(s)	40, 441, 523
Hpy188I	TCNGA	1 cut(s)	311
Hpy188III	TCNNGA	2 cut(s)	397, 560
Hpy8I	GTNNAC	3 cut(s)	40, 441, 523
Hpy99I	CGWCG	2 cut(s)	19, 248
HpyAV	CCTTC	3 cut(s)	170, 275, 361
HpyCH4III	ACNGT	2 cut(s)	445, 501
HpyCH4IV	ACGT	5 cut(s)	69, 80, 243, 259, 504
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	5 cut(s)	69, 80, 243, 259, 504
Hsp92II	CATG	3 cut(s)	96, 532, 615
HspAI	GCGC	2 cut(s)	252, 254
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Ksp22I	TGATCA	2 cut(s)	283, 325
Kzo9I	GATC	4 cut(s)	182, 283, 325, 409
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	1 cut(s)	608
LpnPI	CCDG	8 cut(s)	61, 147, 160, 314, 526, 545, 553, 579
MaeI	CTAG	4 cut(s)	138, 186, 380, 476
MaeII	ACGT	5 cut(s)	69, 80, 243, 259, 504
MaeIII	GTNAC	2 cut(s)	331, 341
MalI	GATC	4 cut(s)	184, 285, 327, 411
MbiI	CCGCTC	1 cut(s)	236
MboI	GATC	4 cut(s)	182, 283, 325, 409
MboII	GAAGA	5 cut(s)	398, 461, 468, 557, 581
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	2 cut(s)	182, 409
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	511
MluCI	AATT	3 cut(s)	270, 313, 336
MluNI	TGGCCA	1 cut(s)	511
MlyI	GAGTC	3 cut(s)	224, 431, 481
MnlI	CCTC	6 cut(s)	71, 157, 511, 564, 567, 579
Mox20I	TGGCCA	1 cut(s)	511
MroNI	GCCGGC	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	316
MscI	TGGCCA	1 cut(s)	511
MseI	TTAA	2 cut(s)	227, 357
Msp20I	TGGCCA	1 cut(s)	511
MspI	CCGG	3 cut(s)	48, 134, 566
MspR9I	CCNGG	2 cut(s)	48, 541
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	541
MvnI	CGCG	2 cut(s)	252, 254
NaeI	GCCGGC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	4 cut(s)	182, 283, 325, 409
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	3 cut(s)	96, 532, 615
NlaIV	GGNNCC	2 cut(s)	534, 564
PauI	GCGCGC	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	2 cut(s)	256, 437
PdiI	GCCGGC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	53
PleI	GAGTC	3 cut(s)	223, 430, 480
PmaCI	CACGTG	1 cut(s)	81
PmlI	CACGTG	1 cut(s)	81
PpsI	GAGTC	3 cut(s)	223, 430, 480
Ppu21I	YACGTR	4 cut(s)	70, 81, 260, 505
Psp6I	CCWGG	1 cut(s)	539
PspCI	CACGTG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	2 cut(s)	534, 564
PspPI	GGNCC	1 cut(s)	578
PsrI	GAACNNNNNNTAC	2 cut(s)	240, 272
PsuI	RGATCY	2 cut(s)	182, 409
PteI	GCGCGC	1 cut(s)	252
RsaI	GTAC	3 cut(s)	72, 464, 503
RsaNI	GTAC	3 cut(s)	71, 463, 502
SalI	GTCGAC	1 cut(s)	439
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	2 cut(s)	227, 357
Sau3AI	GATC	4 cut(s)	182, 283, 325, 409
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	3 cut(s)	224, 431, 481
ScrFI	CCNGG	2 cut(s)	48, 541
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	9 cut(s)	72, 83, 181, 246, 262, 333, 507, 522, 556
SinI	GGWCC	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	3 cut(s)	270, 313, 336
SsiI	CCGC	4 cut(s)	118, 161, 192, 234
SspMI	CTAG	4 cut(s)	138, 186, 380, 476
StyD4I	CCNGG	2 cut(s)	46, 539
StyI	CCWWGG	2 cut(s)	92, 622
TaaI	ACNGT	2 cut(s)	445, 501
TaiI	ACGT	5 cut(s)	72, 83, 246, 262, 507
TaqI	TCGA	3 cut(s)	14, 246, 440
TasI	AATT	3 cut(s)	270, 313, 336
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	2 cut(s)	227, 357
Tru9I	TTAA	2 cut(s)	227, 357
TspDTI	ATGAA	3 cut(s)	216, 399, 592
VpaK11BI	GGWCC	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	4 cut(s)	138, 186, 380, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.