MD15G1051600.v1.1

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014099
Physical Location & Seq
Reverse (-)
3557520 .. 3559648
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1051600.v1.1.491

Sequence Viewer

Length: 669 bp
ATGGCTATGTCGTCTTCCACCTCTACAATATATACTGCCCAGAAAAGCTTTCATATTACTAATCCTACTCCAAAGATTGGCTGTGCATTTTCGAATTCCATAAGTTTTGCGTCTAAACCGCGCAGGCTTTGCATTATTAGGAGCTCCGGCGATGCACCGGCAGAGACTGTTACCACCGAAGCCGATACAGGAAGCTCCATTGAAGTTCCGAAAGAACCGCCTTCTCTGATCTCTGCTCTCAACGTCGAACGGGCCCTTCGTGGCATACCAATTACAGATGTTGATCACTATGGCAGGCTTGGACTTCAAAGAGGATGCTCCTACGATGAGGTTTCAGTTGCATACAAAGCCAACCTTGACAAGCTAATGAGCCAGGGGTTAGAAGAAGAGGAGCTAAACAAGAATTTGGAACCTTTAAAAGAGTCGTACACAATCTTGTCATCGGGGGATGAACGCAGATTGTATGACTGGAGCCTGGCCAGGAGCGCAAACCCAGACGGGTACATTTGGCCTTATGAGGTTGAGAAAACCAGGGCGGCAGAAGGAACTCCGCCGCCAGTGGGGGAACCAGAGGATCCAGGGCCGACGAGGTTGGTGGGGTACTTCATATTGGGATGGTTGATATTGTCCATCGTATTATCCATCGCCCTTAACCGATCGAGCCCTTAA

Protein Analysis

223

Amino Acids

24.25

Weight (kDa)

5.09

Isoelectric Point (pI)

54.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014099)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21430 AT5G21430
fragaria_vesca FvH4_2g31130
malus_domestica MD15G1051600.v1.1
prunus_persica Prupe.1G405600_v2.0.a1 Prupe.1G405600_v2.0.a1
pyrus_communis pycom15g04940
rosa_chinensis RchiOBHm_Chr6g0311651
rosa_laevigata RLG00000010384
rosa_multiflora Rmu_sc0002888.1_g000007
rosa_roxburghii Rroxscaffold_7G00157410
rosa_rugosa Rorug06G0390300
rosa_samantha Rh6AG505600 Rh6BG516400 Rh6CG522300 Rh6DG508100
rosa_wichuraiana Rw6G044010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 77
AccII CGCG 1 cut(s) 121
AciI CCGC 5 cut(s) 119, 218, 536, 551, 554
AclWI GGATC 2 cut(s) 569, 582
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 2 cut(s) 94, 403
AfaI GTAC 3 cut(s) 428, 503, 602
AfiI CCNNNNNNNGG 2 cut(s) 77, 560
AgsI TTSAA 2 cut(s) 203, 308
AjnI CCWGG 5 cut(s) 372, 474, 479, 530, 577
AluBI AGCT 5 cut(s) 48, 144, 195, 364, 394
AluI AGCT 5 cut(s) 48, 144, 195, 364, 394
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 2 cut(s) 569, 582
AlwNI CAGNNNCTG 1 cut(s) 167
AoxI GGCC 4 cut(s) 252, 477, 509, 581
ApaI GGGCCC 1 cut(s) 256
ApoI RAATTY 2 cut(s) 94, 403
AspLEI GCGC 2 cut(s) 123, 488
AspS9I GGNCC 3 cut(s) 252, 253, 581
AsuII TTCGAA 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 256
BalI TGGCCA 1 cut(s) 479
BamHI GGATCC 1 cut(s) 574
BanII GRGCYC 3 cut(s) 146, 256, 665
BbsI GAAGAC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 146
BccI CCATC 3 cut(s) 609, 638, 650
BciT130I CCWGG 5 cut(s) 374, 476, 481, 532, 579
BclI TGATCA 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 158
BisI GCNGC 2 cut(s) 537, 554
BlsI GCNGC 2 cut(s) 538, 555
Bme1390I CCNGG 5 cut(s) 374, 476, 481, 532, 579
BmgT120I GGNCC 3 cut(s) 252, 253, 581
BmiI GGNNCC 5 cut(s) 254, 411, 473, 567, 576
BmrFI CCNGG 5 cut(s) 374, 476, 481, 532, 579
BmsI GCATC 2 cut(s) 142, 305
BpiI GAAGAC 1 cut(s) 6
BpmI CTGGAG 1 cut(s) 490
Bpu14I TTCGAA 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 373, 531, 578
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 560
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 473, 557
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 5 cut(s) 374, 476, 481, 532, 579
BseDI CCNNGG 3 cut(s) 373, 531, 578
BseGI GGATG 3 cut(s) 320, 454, 620
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 77, 560
BseNI ACTGG 2 cut(s) 473, 557
BseRI GAGGAG 1 cut(s) 404
BseSI GKGCMC 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 121
Bsh1285I CGRYCG 1 cut(s) 659
BshFI GGCC 4 cut(s) 254, 479, 511, 583
BsiEI CGRYCG 1 cut(s) 659
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 2 cut(s) 147, 158
BslI CCNNNNNNNGG 2 cut(s) 77, 560
BsmAI GTCTC 1 cut(s) 158
BsnI GGCC 4 cut(s) 254, 479, 511, 583
Bsp119I TTCGAA 1 cut(s) 92
Bsp120I GGGCCC 1 cut(s) 252
Bsp1286I GDGCHC 3 cut(s) 146, 256, 665
Bsp143I GATC 4 cut(s) 228, 283, 574, 656
BspACI CCGC 5 cut(s) 119, 218, 536, 551, 554
BspANI GGCC 4 cut(s) 254, 479, 511, 583
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 5 cut(s) 254, 411, 473, 567, 576
BspPI GGATC 2 cut(s) 569, 582
BspT104I TTCGAA 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 2 cut(s) 473, 557
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 3 cut(s) 373, 531, 578
BssMI GATC 4 cut(s) 228, 283, 574, 656
Bst2UI CCWGG 5 cut(s) 374, 476, 481, 532, 579
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 381
BstAPI GCANNNNNTGC 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 125, 296
BstF5I GGATG 3 cut(s) 320, 454, 620
BstFNI CGCG 1 cut(s) 121
BstHHI GCGC 2 cut(s) 123, 488
BstKTI GATC 4 cut(s) 231, 286, 577, 659
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 4 cut(s) 228, 283, 574, 656
BstMCI CGRYCG 1 cut(s) 659
BstMWI GCNNNNNNNGC 3 cut(s) 129, 347, 485
BstNI CCWGG 5 cut(s) 374, 476, 481, 532, 579
BstSCI CCNGG 5 cut(s) 372, 474, 479, 530, 577
BstSLI GKGCMC 1 cut(s) 256
BstUI CGCG 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 6
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BsuRI GGCC 4 cut(s) 254, 479, 511, 583
BtgZI GCGATG 2 cut(s) 165, 628
BtsCI GGATG 3 cut(s) 320, 454, 620
BtsIMutI CAGTG 1 cut(s) 564
Cac8I GCNNGC 2 cut(s) 125, 296
CaiI CAGNNNCTG 1 cut(s) 167
CfoI GCGC 2 cut(s) 123, 488
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 3 cut(s) 252, 253, 581
CseI GACGC 1 cut(s) 99
Csp6I GTAC 3 cut(s) 427, 502, 601
CviQI GTAC 3 cut(s) 427, 502, 601
DpnI GATC 4 cut(s) 230, 285, 576, 658
DpnII GATC 4 cut(s) 228, 283, 574, 656
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
EciI GGCGGA 1 cut(s) 540
Ecl136II GAGCTC 1 cut(s) 144
Eco24I GRGCYC 3 cut(s) 146, 256, 665
Eco53kI GAGCTC 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 94
EcoRII CCWGG 5 cut(s) 372, 474, 479, 530, 577
EcoT38I GRGCYC 3 cut(s) 146, 256, 665
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 537, 554
FokI GGATG 3 cut(s) 327, 461, 627
FriOI GRGCYC 3 cut(s) 146, 256, 665
Fsp4HI GCNGC 2 cut(s) 537, 554
GlaI GCGC 2 cut(s) 122, 487
GluI GCNGC 2 cut(s) 537, 554
GsuI CTGGAG 1 cut(s) 490
HaeIII GGCC 4 cut(s) 254, 479, 511, 583
HapII CCGG 2 cut(s) 147, 158
HgaI GACGC 1 cut(s) 99
HhaI GCGC 2 cut(s) 123, 488
Hin6I GCGC 2 cut(s) 121, 486
HinP1I GCGC 2 cut(s) 121, 486
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 1 cut(s) 422
HpaII CCGG 2 cut(s) 147, 158
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 2 cut(s) 210, 228
Hpy8I GTNNAC 1 cut(s) 429
Hpy99I CGWCG 2 cut(s) 248, 589
HpyAV CCTTC 3 cut(s) 231, 266, 536
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 4 cut(s) 86, 132, 155, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 347, 485
HpySE526I ACGT 1 cut(s) 243
HspAI GCGC 2 cut(s) 121, 486
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 4 cut(s) 228, 283, 574, 656
LmnI GCTCC 7 cut(s) 141, 149, 200, 323, 391, 471, 483
LweI GCATC 2 cut(s) 142, 305
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 169
MalI GATC 4 cut(s) 230, 285, 576, 658
MboI GATC 4 cut(s) 228, 283, 574, 656
MboII GAAGA 3 cut(s) 6, 395, 398
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 3 cut(s) 146, 256, 665
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 3 cut(s) 94, 270, 403
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 1 cut(s) 431
MnlI CCTC 7 cut(s) 31, 305, 322, 382, 511, 565, 582
Mox20I TGGCCA 1 cut(s) 479
MscI TGGCCA 1 cut(s) 479
MseI TTAA 3 cut(s) 416, 651, 667
Msp20I TGGCCA 1 cut(s) 479
MspI CCGG 2 cut(s) 147, 158
MspR9I CCNGG 5 cut(s) 374, 476, 481, 532, 579
MvaI CCWGG 5 cut(s) 374, 476, 481, 532, 579
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 3 cut(s) 129, 347, 485
NdeII GATC 4 cut(s) 228, 283, 574, 656
NlaIV GGNNCC 5 cut(s) 254, 411, 473, 567, 576
NspV TTCGAA 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 256
PflMI CCANNNNNTGG 1 cut(s) 77
PkrI GCNGC 2 cut(s) 538, 555
Ple19I CGATCG 1 cut(s) 659
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Psp124BI GAGCTC 1 cut(s) 146
Psp6I CCWGG 5 cut(s) 372, 474, 479, 530, 577
PspGI CCWGG 5 cut(s) 372, 474, 479, 530, 577
PspN4I GGNNCC 5 cut(s) 254, 411, 473, 567, 576
PspOMI GGGCCC 1 cut(s) 252
PspPI GGNCC 3 cut(s) 252, 253, 581
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 574
PvuI CGATCG 1 cut(s) 659
RsaI GTAC 3 cut(s) 428, 503, 602
RsaNI GTAC 3 cut(s) 427, 502, 601
SacI GAGCTC 1 cut(s) 146
SaqAI TTAA 3 cut(s) 416, 651, 667
SatI GCNGC 2 cut(s) 537, 554
Sau3AI GATC 4 cut(s) 228, 283, 574, 656
Sau96I GGNCC 3 cut(s) 252, 253, 581
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 5 cut(s) 374, 476, 481, 532, 579
SduI GDGCHC 3 cut(s) 146, 256, 665
SfaNI GCATC 2 cut(s) 142, 305
SfuI TTCGAA 1 cut(s) 92
Sse9I AATT 3 cut(s) 94, 270, 403
SsiI CCGC 5 cut(s) 119, 218, 536, 551, 554
SstI GAGCTC 1 cut(s) 146
StyD4I CCNGG 5 cut(s) 372, 474, 479, 530, 577
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 246
TaqI TCGA 3 cut(s) 92, 246, 659
TasI AATT 3 cut(s) 94, 270, 403
TauI GCSGC 2 cut(s) 539, 556
Tru1I TTAA 3 cut(s) 416, 651, 667
Tru9I TTAA 3 cut(s) 416, 651, 667
TscAI CASTG 1 cut(s) 564
TspDTI ATGAA 3 cut(s) 41, 465, 595
TspRI CASTG 1 cut(s) 564
Van91I CCANNNNNTGG 1 cut(s) 77
XapI RAATTY 2 cut(s) 94, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.