Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014099

Physical Location & Seq

Genomic Coordinates Reverse (-)

1244730 .. 1246415

Gene Structure 1686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCCATCAGGTTTGCGCCAAAACCGCGCAGGTTTTGCATTAGAAGCTCGAGTGATGTATCGGCTGCAGAGACTGCATCTGCTACTGAGAATGATGAAAGTTCCATCGAAGTTCCGAAAGAACCGCCTTCACTGATTTCTGCCCTTAATGTCGAACGAGCTCTTCGTGGCATACCAATTACAGATGTGAATCACTATGGTAGGCTCGGACTTCAAAGAGGATGCACCTCCGACCAGATTTTAGCTGCATACAAAACCAAGCTTGACGAGCTAAAGAGCCAGGGATTAGAGGAGGAGGAGCTAAACAAGAAATTGGAACCTTTAAAAGAGTCCTACACAATATTATCGTCCGCGGATGAGAAAAGATTATATGATTGGAGCCTAGGCAGGAGTGCAAAGCCAGATACCTATCTTTGGCCTTTTGAGGTTGAGACAACGAGAGCAACGCCGGATACTCCCCCACCTGTAATGGAACCTGAAGACTTCGGGCCGACAAGATTGGTGGGATACATCGGGTTGGGATGGATAGTATTGTCCTTCATATTATCCATAGCCCTTAATCGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0010598 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

189

Amino Acids

21.03

Weight (kDa)

5.1

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21430 AT5G21430
fragaria_vesca	FvH4_2g31130
malus_domestica	MD15G1051600.v1.1
prunus_persica	Prupe.1G405600_v2.0.a1 Prupe.1G405600_v2.0.a1
pyrus_communis	pycom15g04940
rosa_chinensis	RchiOBHm_Chr6g0311651
rosa_laevigata	RLG00000010384
rosa_multiflora	Rmu_sc0002888.1_g000007
rosa_roxburghii	Rroxscaffold_7G00157410
rosa_rugosa	Rorug06G0390300
rosa_samantha	Rh6AG505600 Rh6BG516400 Rh6CG522300 Rh6DG508100
rosa_wichuraiana	Rw6G044010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	21
AccII	CGCG	2 cut(s)	28, 353
AciI	CCGC	4 cut(s)	26, 125, 351, 353
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	498
AfiI	CCNNNNNNNGG	1 cut(s)	414
AgsI	TTSAA	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	6 cut(s)	48, 161, 245, 262, 271, 301
AluI	AGCT	6 cut(s)	48, 161, 245, 262, 271, 301
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	2 cut(s)	65, 425
AlwNI	CAGNNNCTG	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	3 cut(s)	3, 416, 488
ApeKI	GCWGC	2 cut(s)	65, 245
AspA2I	CCTAGG	1 cut(s)	382
AspLEI	GCGC	2 cut(s)	19, 30
AspS9I	GGNCC	1 cut(s)	488
AvaI	CYCGRG	1 cut(s)	49
AvrII	CCTAGG	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	52, 232
BccI	CCATC	3 cut(s)	14, 113, 516
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	2 cut(s)	445, 500
BcoDI	GTCTC	2 cut(s)	65, 425
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	66
BfuAI	ACCTGC	1 cut(s)	21
BfuI	GTATCC	2 cut(s)	445, 500
BisI	GCNGC	2 cut(s)	66, 246
BlnI	CCTAGG	1 cut(s)	382
BlsI	GCNGC	2 cut(s)	67, 247
Bme1390I	CCNGG	1 cut(s)	281
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	3 cut(s)	318, 380, 474
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	86, 212
BpiI	GAAGAC	1 cut(s)	486
BsaBI	GATNNNNATC	2 cut(s)	189, 408
BsaJI	CCNNGG	3 cut(s)	280, 351, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse8I	GATNNNNATC	2 cut(s)	189, 408
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	3 cut(s)	280, 351, 382
BseGI	GGATG	3 cut(s)	227, 361, 527
BseJI	GATNNNNATC	2 cut(s)	189, 408
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseMII	CTCAG	1 cut(s)	78
BseRI	GAGGAG	3 cut(s)	305, 308, 311
BseXI	GCAGC	2 cut(s)	52, 232
Bsh1236I	CGCG	2 cut(s)	28, 353
BshFI	GGCC	3 cut(s)	5, 418, 490
BsiHKAI	GWGCWC	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	414
BsmAI	GTCTC	2 cut(s)	65, 425
BsnI	GGCC	3 cut(s)	5, 418, 490
BsoBI	CYCGRG	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	163
BspACI	CCGC	4 cut(s)	26, 125, 351, 353
BspANI	GGCC	3 cut(s)	5, 418, 490
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	2 cut(s)	28, 353
BspLI	GGNNCC	3 cut(s)	318, 380, 474
BspMAI	CTGCAG	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	168
BssECI	CCNNGG	3 cut(s)	280, 351, 382
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	168
BstAPI	GCANNNNNTGC	2 cut(s)	36, 74
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	3 cut(s)	227, 361, 527
BstFNI	CGCG	2 cut(s)	28, 353
BstHHI	GCGC	2 cut(s)	19, 30
BstMAI	GTCTC	2 cut(s)	65, 425
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 36, 45, 74, 268
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	2 cut(s)	28, 353
BstV1I	GCAGC	2 cut(s)	52, 232
BstV2I	GAAGAC	1 cut(s)	486
BsuI	GTATCC	2 cut(s)	445, 500
BsuRI	GGCC	3 cut(s)	5, 418, 490
BtgI	CCRYGG	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	227, 361, 527
BtsIMutI	CAGTG	1 cut(s)	131
BveI	ACCTGC	1 cut(s)	21
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	2 cut(s)	19, 30
Cfr13I	GGNCC	1 cut(s)	488
Cfr42I	CCGCGG	1 cut(s)	354
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
DdeI	CTNAG	1 cut(s)	87
DraI	TTTAAA	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	498
Eco88I	CYCGRG	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	382
FaiI	YATR	7 cut(s)	173, 198, 250, 370, 372, 542, 551
Fnu4HI	GCNGC	2 cut(s)	66, 246
FokI	GGATG	3 cut(s)	234, 368, 534
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	2 cut(s)	66, 246
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	2 cut(s)	18, 29
GluI	GCNGC	2 cut(s)	66, 246
HaeIII	GGCC	3 cut(s)	5, 418, 490
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	2 cut(s)	19, 30
Hin6I	GCGC	2 cut(s)	17, 28
HinP1I	GCGC	2 cut(s)	17, 28
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	2 cut(s)	190, 329
HpaII	CCGG	1 cut(s)	449
Hpy188I	TCNGA	3 cut(s)	117, 209, 232
HpyAV	CCTTC	2 cut(s)	138, 547
HpyCH4V	TGCA	6 cut(s)	39, 68, 77, 225, 248, 395
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 36, 45, 74, 268
HpyF3I	CTNAG	1 cut(s)	87
HspAI	GCGC	2 cut(s)	17, 28
KspI	CCGCGG	1 cut(s)	354
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	298, 378
LpnPI	CCDG	9 cut(s)	16, 248, 266, 293, 373, 414, 462, 477, 489
Lsp1109I	GCAGC	2 cut(s)	52, 232
LweI	GCATC	2 cut(s)	86, 212
MaeI	CTAG	1 cut(s)	383
MboII	GAAGA	2 cut(s)	155, 491
MhlI	GDGCHC	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	177, 311
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	7 cut(s)	212, 238, 283, 286, 289, 418, 557
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	147, 323, 558
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	2 cut(s)	28, 353
MwoI	GCNNNNNNNGC	5 cut(s)	25, 36, 45, 74, 268
NlaIV	GGNNCC	3 cut(s)	318, 380, 474
PaeR7I	CTCGAG	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	67, 247
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	318, 380, 474
PspPI	GGNCC	1 cut(s)	488
PspXI	VCTCGAGB	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	163
SacII	CCGCGG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	147, 323, 558
SatI	GCNGC	2 cut(s)	66, 246
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	163
SfaNI	GCATC	2 cut(s)	86, 212
SfcI	CTRYAG	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	49
Sfr303I	CCGCGG	1 cut(s)	354
SgrBI	CCGCGG	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	2 cut(s)	177, 311
SsiI	CCGC	4 cut(s)	26, 125, 351, 353
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	1 cut(s)	383
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	382
TaqI	TCGA	4 cut(s)	50, 108, 153, 562
TasI	AATT	2 cut(s)	177, 311
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	3 cut(s)	147, 323, 558
Tru9I	TTAA	3 cut(s)	147, 323, 558
TscAI	CASTG	1 cut(s)	138
TseI	GCWGC	2 cut(s)	65, 245
TspDTI	ATGAA	2 cut(s)	111, 529
TspRI	CASTG	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	49
XmaJI	CCTAGG	1 cut(s)	382
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.