FvH4_2g31130

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014099
Physical Location & Seq
Reverse (-)
23953961 .. 23955825
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31130.t1

Sequence Viewer

Length: 666 bp
ATGGCTGTGTCCTCTTCCACTTCAGTATATATTACCCAGAAAACCTTTCGTATACCAACTCCGAAAGATGGCTTTGCATTCTCAAATTCCATGACCATCAGTTTTGCACCAAATCTGCGCAAGTTTTGCATTCGAAGCTCAGGTAGTGATGTGTCTGCTGCAGAGACTGCAACTGCTACTGAGAATGATGGAAGCTCCATCGAAGTTCCGGAAGAATCCCCGTCTCTGATTTCTGCCCTTAACGTCGAACGAGCTCTTCGTGGCATACCAATTACTGATGTGAATCACTATGGTAGGCTAGGACTTCAAAGAGGATGCACCTCCGACCAGATTAGAGCTGCATATAAAACCAAGCTTGATGAGCTAAAGAGCCAGGGACTAGAAGAGGAGGAGCTAAACAAGAAATTGGAACCTTTGAAAGAGTCCTACACCATATTATCGTCCGCGGATGAGAAAAGGTTATATGATTGGAGCCTAGGCAGGACTGCAAATCCAGACACATATCTTTGGCCTTTTGAGGTTGAGACCACGAGAGCAACCCCGGATACTCCCCCACCAGTAATGGAACCCGAAGACTTTGGGCCGACGAGATTGGTGGGATACGTCGGGTTGGGATGGATAATATTGTCCCTTGTATTATCAATAGCCCTTAATCGAGGACCCTAG

Protein Analysis

222

Amino Acids

24.29

Weight (kDa)

5.0

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 95 - 156 7.5e-06 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014099)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21430 AT5G21430
fragaria_vesca FvH4_2g31130
malus_domestica MD15G1051600.v1.1
prunus_persica Prupe.1G405600_v2.0.a1 Prupe.1G405600_v2.0.a1
pyrus_communis pycom15g04940
rosa_chinensis RchiOBHm_Chr6g0311651
rosa_laevigata RLG00000010384
rosa_multiflora Rmu_sc0002888.1_g000007
rosa_roxburghii Rroxscaffold_7G00157410
rosa_rugosa Rorug06G0390300
rosa_samantha Rh6AG505600 Rh6BG516400 Rh6CG522300 Rh6DG508100
rosa_wichuraiana Rw6G044010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 119
AccI GTMKAC 1 cut(s) 52
AccII CGCG 1 cut(s) 446
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 2 cut(s) 444, 446
AcsI RAATTY 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 2 cut(s) 308, 418
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 7 cut(s) 138, 195, 254, 338, 355, 364, 394
AluI AGCT 7 cut(s) 138, 195, 254, 338, 355, 364, 394
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 3 cut(s) 158, 228, 518
AlwNI CAGNNNCTG 1 cut(s) 167
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 2 cut(s) 509, 581
ApeKI GCWGC 2 cut(s) 158, 338
ApoI RAATTY 1 cut(s) 85
AspA2I CCTAGG 1 cut(s) 475
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 581, 659
AsuC2I CCSGG 1 cut(s) 542
AsuII TTCGAA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 659
AvrII CCTAGG 1 cut(s) 475
BanII GRGCYC 1 cut(s) 256
BauI CACGAG 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 2 cut(s) 145, 325
BccI CCATC 5 cut(s) 62, 104, 182, 206, 609
BciT130I CCWGG 1 cut(s) 374
BciVI GTATCC 2 cut(s) 538, 593
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 3 cut(s) 158, 228, 518
BfaI CTAG 4 cut(s) 299, 380, 476, 664
BfmI CTRYAG 1 cut(s) 159
BfuI GTATCC 2 cut(s) 538, 593
BisI GCNGC 2 cut(s) 159, 339
BlnI CCTAGG 1 cut(s) 475
BlsI GCNGC 2 cut(s) 160, 340
Bme1390I CCNGG 2 cut(s) 374, 542
Bme18I GGWCC 1 cut(s) 659
BmgT120I GGNCC 2 cut(s) 581, 659
BmiI GGNNCC 4 cut(s) 411, 473, 567, 661
BmrFI CCNGG 2 cut(s) 374, 542
BmsI GCATC 1 cut(s) 305
BpiI GAAGAC 1 cut(s) 579
Bpu10I CCTNAGC 1 cut(s) 139
Bpu14I TTCGAA 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 518
BsaJI CCNNGG 4 cut(s) 373, 444, 475, 540
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 557
Bse8I GATNNNNATC 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 4 cut(s) 373, 444, 475, 540
BseGI GGATG 3 cut(s) 320, 454, 620
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 2 cut(s) 153, 171
BseNI ACTGG 1 cut(s) 557
BseRI GAGGAG 2 cut(s) 401, 404
BseXI GCAGC 2 cut(s) 145, 325
Bsh1236I CGCG 1 cut(s) 446
BshFI GGCC 2 cut(s) 511, 583
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 2 cut(s) 209, 542
BslFI GGGAC 2 cut(s) 390, 613
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 3 cut(s) 158, 228, 518
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 2 cut(s) 390, 613
BsmI GAATGC 2 cut(s) 77, 129
BsnI GGCC 2 cut(s) 511, 583
Bso31I GGTCTC 1 cut(s) 518
Bsp119I TTCGAA 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 256
Bsp13I TCCGGA 1 cut(s) 208
BspACI CCGC 2 cut(s) 444, 446
BspANI GGCC 2 cut(s) 511, 583
BspCNI CTCAG 2 cut(s) 152, 172
BspEI TCCGGA 1 cut(s) 208
BspFNI CGCG 1 cut(s) 446
BspLI GGNNCC 4 cut(s) 411, 473, 567, 661
BspMAI CTGCAG 1 cut(s) 163
BspQI GCTCTTC 1 cut(s) 261
BspT104I TTCGAA 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 518
BsrI ACTGG 1 cut(s) 557
BssECI CCNNGG 4 cut(s) 373, 444, 475, 540
BssNAI GTATAC 1 cut(s) 53
BssSI CACGAG 1 cut(s) 529
BssT1I CCWWGG 1 cut(s) 475
Bst1107I GTATAC 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 529
Bst2UI CCWGG 1 cut(s) 374
Bst6I CTCTTC 3 cut(s) 19, 261, 378
BstAPI GCANNNNNTGC 2 cut(s) 126, 167
BstBI TTCGAA 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 139, 180
BstDSI CCRYGG 1 cut(s) 444
BstF5I GGATG 3 cut(s) 320, 454, 620
BstFNI CGCG 1 cut(s) 446
BstHHI GCGC 1 cut(s) 120
BstMAI GTCTC 3 cut(s) 158, 228, 518
BstMWI GCNNNNNNNGC 4 cut(s) 126, 135, 167, 361
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 2 cut(s) 372, 540
BstSFI CTRYAG 1 cut(s) 159
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 2 cut(s) 145, 325
BstV2I GAAGAC 1 cut(s) 579
BstZ17I GTATAC 1 cut(s) 53
BsuI GTATCC 2 cut(s) 538, 593
BsuRI GGCC 2 cut(s) 511, 583
BtgI CCRYGG 1 cut(s) 444
BtsCI GGATG 3 cut(s) 320, 454, 620
CaiI CAGNNNCTG 1 cut(s) 167
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 581, 659
Cfr42I CCGCGG 1 cut(s) 447
CviAII CATG 1 cut(s) 91
DdeI CTNAG 2 cut(s) 139, 180
Eam1104I CTCTTC 3 cut(s) 19, 261, 378
EarI CTCTTC 3 cut(s) 19, 261, 378
Ecl136II GAGCTC 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 518
Eco47I GGWCC 1 cut(s) 659
Eco53kI GAGCTC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 659
EcoRII CCWGG 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 475
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 1 cut(s) 94
FaqI GGGAC 2 cut(s) 390, 613
FatI CATG 1 cut(s) 90
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 159, 339
FokI GGATG 3 cut(s) 327, 461, 627
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 2 cut(s) 159, 339
FspBI CTAG 4 cut(s) 299, 380, 476, 664
FspI TGCGCA 1 cut(s) 119
GlaI GCGC 1 cut(s) 119
GluI GCNGC 2 cut(s) 159, 339
HaeIII GGCC 2 cut(s) 511, 583
HapII CCGG 2 cut(s) 209, 542
HhaI GCGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 3 cut(s) 215, 283, 422
HpaII CCGG 2 cut(s) 209, 542
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 3 cut(s) 63, 228, 325
Hpy188III TCNNGA 2 cut(s) 209, 494
Hpy8I GTNNAC 1 cut(s) 53
Hpy99I CGWCG 3 cut(s) 248, 589, 608
HpyCH4IV ACGT 2 cut(s) 243, 603
HpyCH4V TGCA 8 cut(s) 77, 107, 129, 161, 170, 318, 341, 488
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 135, 167, 361
HpyF3I CTNAG 2 cut(s) 139, 180
HpySE526I ACGT 2 cut(s) 243, 603
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 118
Kpn2I TCCGGA 1 cut(s) 208
KspI CCGCGG 1 cut(s) 447
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 3 cut(s) 200, 391, 471
Lsp1109I GCAGC 2 cut(s) 145, 325
LweI GCATC 1 cut(s) 305
MaeI CTAG 4 cut(s) 299, 380, 476, 664
MaeII ACGT 2 cut(s) 243, 603
MboII GAAGA 5 cut(s) 6, 224, 248, 395, 584
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 3 cut(s) 85, 270, 404
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 7 cut(s) 22, 305, 331, 379, 382, 511, 650
MroI TCCGGA 1 cut(s) 208
MseI TTAA 2 cut(s) 240, 651
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 2 cut(s) 209, 542
MspR9I CCNGG 2 cut(s) 374, 542
Mva1269I GAATGC 2 cut(s) 77, 129
MvaI CCWGG 1 cut(s) 374
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 4 cut(s) 126, 135, 167, 361
NciI CCSGG 1 cut(s) 542
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 4 cut(s) 411, 473, 567, 661
NsbI TGCGCA 1 cut(s) 119
NspV TTCGAA 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 256
PctI GAATGC 2 cut(s) 77, 129
PfeI GAWTC 2 cut(s) 215, 283
PkrI GCNGC 2 cut(s) 160, 340
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PpuMI RGGWCCY 1 cut(s) 659
Psp124BI GAGCTC 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 659
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 4 cut(s) 411, 473, 567, 661
PspPI GGNCC 2 cut(s) 581, 659
PspPPI RGGWCCY 1 cut(s) 659
PstI CTGCAG 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 167
SacI GAGCTC 1 cut(s) 256
SacII CCGCGG 1 cut(s) 447
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 2 cut(s) 240, 651
SatI GCNGC 2 cut(s) 159, 339
Sau96I GGNCC 2 cut(s) 581, 659
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 2 cut(s) 374, 542
SduI GDGCHC 1 cut(s) 256
SfaNI GCATC 1 cut(s) 305
SfcI CTRYAG 1 cut(s) 159
Sfr303I CCGCGG 1 cut(s) 447
SfuI TTCGAA 1 cut(s) 133
SgrBI CCGCGG 1 cut(s) 447
SinI GGWCC 1 cut(s) 659
Sse9I AATT 3 cut(s) 85, 270, 404
SsiI CCGC 2 cut(s) 444, 446
SspI AATATT 1 cut(s) 624
SspMI CTAG 4 cut(s) 299, 380, 476, 664
SstI GAGCTC 1 cut(s) 256
StyD4I CCNGG 2 cut(s) 372, 540
StyI CCWWGG 1 cut(s) 475
TaiI ACGT 2 cut(s) 246, 606
TaqI TCGA 4 cut(s) 133, 201, 246, 655
TasI AATT 3 cut(s) 85, 270, 404
TfiI GAWTC 2 cut(s) 215, 283
Tru1I TTAA 2 cut(s) 240, 651
Tru9I TTAA 2 cut(s) 240, 651
TseI GCWGC 2 cut(s) 158, 338
VpaK11BI GGWCC 1 cut(s) 659
XapI RAATTY 1 cut(s) 85
XmaJI CCTAGG 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 4 cut(s) 299, 380, 476, 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.