Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0014099

Physical Location & Seq

Genomic Coordinates Forward (+)

71033896 .. 71035534

Gene Structure 1639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG516400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCCAATGGCTGTGTCCTCTTCCACTTCTACAGTATATATTGCCCAGAAAAGCTTTCCTATACCAACTCCAAAAGATGGTTTTGCGTTCTCAAACTCTTTGGCCATCAGGTTTGCGCCAAAACCGCGCAGGTTTTGCATTAGAAGCTCAAGTGATGTATCGGCTGCAGAGACTGCATCTGCTACTGAGAATGATGAAAGTTCCATCGAAGTTCCGAAAGAACCGCCGTCACTGATTTCTGCCCTTAATGTCGAACGAGCTCTCCGTGGCATACCAATTACAGATGTGAATCACTATGGTAGGCTCGGACTTCAAAGAGGATGCACCTCCGACCAGATTTTAGCTGCATATAAAACCAAGCTTGACGAGCTAAAGAGCCAGGAATTAGAGGAGGAGGAGCTAAACAAGAAATTGGAACCTTTAAAAGAGTCCTACACAATATTATCGTCCGCGGATGAGAAAAGATTATATGATTGGAGCCTAGGCAGGAGTGCAAAGCCAGATACCTATCTTTGGCCTTTTGAGGTTGAGACAACGAGAGCAACGCCAGATACCCCCCCACCAGTAATGGAACCTGAAGACTTCGGGCCGACAAGATTGGTGGGATACATCGGGTTGGGATGGATAATAGTGTCCTTCATATTATCCATAGCCCTTAATCGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0010598 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

222

Amino Acids

24.56

Weight (kDa)

5.13

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21430 AT5G21430
fragaria_vesca	FvH4_2g31130
malus_domestica	MD15G1051600.v1.1
prunus_persica	Prupe.1G405600_v2.0.a1 Prupe.1G405600_v2.0.a1
pyrus_communis	pycom15g04940
rosa_chinensis	RchiOBHm_Chr6g0311651
rosa_laevigata	RLG00000010384
rosa_multiflora	Rmu_sc0002888.1_g000007
rosa_roxburghii	Rroxscaffold_7G00157410
rosa_rugosa	Rorug06G0390300
rosa_samantha	Rh6AG505600 Rh6BG516400 Rh6CG522300 Rh6DG508100
rosa_wichuraiana	Rw6G044010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
AccB7I	CCANNNNNTGG	1 cut(s)	77
AccII	CGCG	2 cut(s)	127, 452
AciI	CCGC	4 cut(s)	125, 224, 450, 452
AcoI	YGGCCR	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	597
AfiI	CCNNNNNNNGG	2 cut(s)	77, 513
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	378
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	7 cut(s)	54, 147, 260, 344, 361, 370, 400
AluI	AGCT	7 cut(s)	54, 147, 260, 344, 361, 370, 400
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	2 cut(s)	164, 524
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	3 cut(s)	102, 515, 587
ApeKI	GCWGC	2 cut(s)	164, 344
AspA2I	CCTAGG	1 cut(s)	481
AspLEI	GCGC	2 cut(s)	118, 129
AspS9I	GGNCC	1 cut(s)	587
AvrII	CCTAGG	1 cut(s)	481
BalI	TGGCCA	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	585
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	2 cut(s)	151, 331
BccI	CCATC	4 cut(s)	71, 113, 212, 615
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	380
BciVI	GTATCC	1 cut(s)	599
BcoDI	GTCTC	2 cut(s)	164, 524
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	2 cut(s)	30, 165
BfuAI	ACCTGC	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	599
BisI	GCNGC	2 cut(s)	165, 345
BlnI	CCTAGG	1 cut(s)	481
BlsI	GCNGC	2 cut(s)	166, 346
Bme1390I	CCNGG	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	3 cut(s)	417, 479, 573
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	185, 311
BpiI	GAAGAC	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	133
BsaBI	GATNNNNATC	2 cut(s)	288, 507
BsaJI	CCNNGG	3 cut(s)	265, 450, 481
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 513
Bse1I	ACTGG	1 cut(s)	563
Bse8I	GATNNNNATC	2 cut(s)	288, 507
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	3 cut(s)	265, 450, 481
BseGI	GGATG	3 cut(s)	326, 460, 626
BseJI	GATNNNNATC	2 cut(s)	288, 507
BseLI	CCNNNNNNNGG	2 cut(s)	77, 513
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	3 cut(s)	404, 407, 410
BseXI	GCAGC	2 cut(s)	151, 331
Bsh1236I	CGCG	2 cut(s)	127, 452
BshFI	GGCC	3 cut(s)	104, 517, 589
BsiHKAI	GWGCWC	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	77, 513
BsmAI	GTCTC	2 cut(s)	164, 524
BsnI	GGCC	3 cut(s)	104, 517, 589
Bsp1286I	GDGCHC	1 cut(s)	262
BspACI	CCGC	4 cut(s)	125, 224, 450, 452
BspANI	GGCC	3 cut(s)	104, 517, 589
BspCNI	CTCAG	1 cut(s)	178
BspFNI	CGCG	2 cut(s)	127, 452
BspLI	GGNNCC	3 cut(s)	417, 479, 573
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	563
BssECI	CCNNGG	3 cut(s)	265, 450, 481
BssT1I	CCWWGG	1 cut(s)	481
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	25
BstAPI	GCANNNNNTGC	2 cut(s)	135, 173
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	2 cut(s)	265, 450
BstF5I	GGATG	3 cut(s)	326, 460, 626
BstFNI	CGCG	2 cut(s)	127, 452
BstHHI	GCGC	2 cut(s)	118, 129
BstMAI	GTCTC	2 cut(s)	164, 524
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 135, 144, 173, 367
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	2 cut(s)	30, 165
BstUI	CGCG	2 cut(s)	127, 452
BstV1I	GCAGC	2 cut(s)	151, 331
BstV2I	GAAGAC	1 cut(s)	585
BsuI	GTATCC	1 cut(s)	599
BsuRI	GGCC	3 cut(s)	104, 517, 589
BtgI	CCRYGG	2 cut(s)	265, 450
BtsCI	GGATG	3 cut(s)	326, 460, 626
BtsIMutI	CAGTG	1 cut(s)	230
BveI	ACCTGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	2 cut(s)	118, 129
Cfr13I	GGNCC	1 cut(s)	587
Cfr42I	CCGCGG	1 cut(s)	453
CspCI	CAANNNNNGTGG	2 cut(s)	582, 617
DdeI	CTNAG	1 cut(s)	186
DraI	TTTAAA	1 cut(s)	423
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	262
Eco53kI	GAGCTC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	597
EcoICRI	GAGCTC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	165, 345
FokI	GGATG	3 cut(s)	333, 467, 633
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	2 cut(s)	165, 345
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	2 cut(s)	117, 128
GluI	GCNGC	2 cut(s)	165, 345
HaeIII	GGCC	3 cut(s)	104, 517, 589
HhaI	GCGC	2 cut(s)	118, 129
Hin6I	GCGC	2 cut(s)	116, 127
HinP1I	GCGC	2 cut(s)	116, 127
HindIII	AAGCTT	2 cut(s)	52, 359
HinfI	GANTC	2 cut(s)	289, 428
Hpy188I	TCNGA	3 cut(s)	216, 308, 331
HpyAV	CCTTC	1 cut(s)	646
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	6 cut(s)	138, 167, 176, 324, 347, 494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 135, 144, 173, 367
HpyF3I	CTNAG	1 cut(s)	186
HspAI	GCGC	2 cut(s)	116, 127
KspI	CCGCGG	1 cut(s)	453
LmnI	GCTCC	2 cut(s)	397, 477
Lsp1109I	GCAGC	2 cut(s)	151, 331
LweI	GCATC	2 cut(s)	185, 311
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	1 cut(s)	228
MboII	GAAGA	2 cut(s)	12, 590
MhlI	GDGCHC	1 cut(s)	262
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	3 cut(s)	276, 383, 410
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	8 cut(s)	28, 311, 337, 382, 385, 388, 517, 656
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	3 cut(s)	246, 422, 657
Msp20I	TGGCCA	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	2 cut(s)	127, 452
MwoI	GCNNNNNNNGC	5 cut(s)	124, 135, 144, 173, 367
NlaIV	GGNNCC	3 cut(s)	417, 479, 573
NmuCI	GTSAC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	289
PflMI	CCANNNNNTGG	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	166, 346
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Psp124BI	GAGCTC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	3 cut(s)	417, 479, 573
PspPI	GGNCC	1 cut(s)	587
PstI	CTGCAG	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	173
SacI	GAGCTC	1 cut(s)	262
SacII	CCGCGG	1 cut(s)	453
SaqAI	TTAA	3 cut(s)	246, 422, 657
SatI	GCNGC	2 cut(s)	165, 345
Sau96I	GGNCC	1 cut(s)	587
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	262
SfaNI	GCATC	2 cut(s)	185, 311
SfcI	CTRYAG	2 cut(s)	30, 165
Sfr303I	CCGCGG	1 cut(s)	453
SgrBI	CCGCGG	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	3 cut(s)	276, 383, 410
SsiI	CCGC	4 cut(s)	125, 224, 450, 452
SspI	AATATT	1 cut(s)	441
SspMI	CTAG	1 cut(s)	482
SstI	GAGCTC	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	3 cut(s)	207, 252, 661
TasI	AATT	3 cut(s)	276, 383, 410
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	3 cut(s)	246, 422, 657
Tru9I	TTAA	3 cut(s)	246, 422, 657
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	2 cut(s)	164, 344
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	2 cut(s)	210, 628
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	237
Van91I	CCANNNNNTGG	1 cut(s)	77
XmaJI	CCTAGG	1 cut(s)	481
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.