Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014099

Physical Location & Seq

Genomic Coordinates Reverse (-)

35658527 .. 35661943

Gene Structure 3417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G405600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCCAATGGCTGTGTCATCTTCCACCTCTACCATACACATTGCGCAGAAAAGCTTTCCTATTAATCCAACGCCTAAAAATGGTTGTATATTCTCTTCAAACTCCATAAGGTTTGCTTCAAAACCGCGCAGGTTTTGCATCATTAGAAGCTCCAGTGATGTGTCGGCAGAGACTGCCACGACTGAAGCCGATTCACAAAGCTCCATTGAAGTTCCGCAAGAACCGCCTTCTCTGATTTCTGCTCTTAATGTGGAACGAGCACTTCGCGGCATACCAATTACAGATGTAGATCACTATGGCAGGCTTGGACTTCGAAGAGGATGCTCGTACGATGAGGTTTTGGTTGCGTACAAAGCCAAGCGTGATGAGCTAAAGAACCAGGGGTTAGATGAAGAGGAGCTGAACAAGAATCTGGTGTCTTTAAAAGAGTCGTATACAATCTTGTCATCTGGGGATGAGCGAAGACTATACGATTGGAGCCTGGCCAGAAGCGAAAAACCAGACACGTATGTTTGGCCTTATGAGGTTGAGAAAACGAGACCGGCAGAAGGAACACCACCACCAGTACAGGAACCAGATGATCCAGGGCCGACAAGATTGGTGGGATACTTCATATTGGGATGGTTCATATTGTCCATCATATTATCCATAGCCCTTAATCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0010598 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

222

Amino Acids

24.65

Weight (kDa)

5.56

Isoelectric Point (pI)

59.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21430 AT5G21430
fragaria_vesca	FvH4_2g31130
malus_domestica	MD15G1051600.v1.1
prunus_persica	Prupe.1G405600_v2.0.a1 Prupe.1G405600_v2.0.a1
pyrus_communis	pycom15g04940
rosa_chinensis	RchiOBHm_Chr6g0311651
rosa_laevigata	RLG00000010384
rosa_multiflora	Rmu_sc0002888.1_g000007
rosa_roxburghii	Rroxscaffold_7G00157410
rosa_rugosa	Rorug06G0390300
rosa_samantha	Rh6AG505600 Rh6BG516400 Rh6CG522300 Rh6DG508100
rosa_wichuraiana	Rw6G044010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	45
Acc36I	ACCTGC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	434
AccII	CGCG	2 cut(s)	127, 267
AciI	CCGC	4 cut(s)	125, 215, 224, 267
AclWI	GGATC	1 cut(s)	575
AcoI	YGGCCR	1 cut(s)	483
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	3 cut(s)	329, 350, 567
AfiI	CCNNNNNNNGG	2 cut(s)	80, 548
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	3 cut(s)	99, 120, 209
AjnI	CCWGG	3 cut(s)	378, 480, 583
AluBI	AGCT	5 cut(s)	54, 150, 201, 370, 400
AluI	AGCT	5 cut(s)	54, 150, 201, 370, 400
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	2 cut(s)	164, 532
AlwI	GGATC	1 cut(s)	575
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	3 cut(s)	483, 515, 587
AseI	ATTAAT	1 cut(s)	63
AspLEI	GCGC	2 cut(s)	46, 129
AspS9I	GGNCC	1 cut(s)	587
AsuII	TTCGAA	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	485
BarI	GAAGNNNNNNTAC	2 cut(s)	79, 111
BbsI	GAAGAC	1 cut(s)	469
Bbv12I	GWGCWC	1 cut(s)	262
BccI	CCATC	2 cut(s)	615, 644
BcgI	CGANNNNNNTGC	2 cut(s)	303, 337
BciT130I	CCWGG	3 cut(s)	380, 482, 585
BciVI	GTATCC	1 cut(s)	599
BcoDI	GTCTC	2 cut(s)	164, 532
BfuAI	ACCTGC	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	599
BisI	GCNGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	269
Bme1390I	CCNGG	3 cut(s)	380, 482, 585
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	2 cut(s)	479, 573
BmrFI	CCNGG	3 cut(s)	380, 482, 585
BmsI	GCATC	2 cut(s)	147, 311
BpiI	GAAGAC	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	136
Bpu14I	TTCGAA	1 cut(s)	313
Bsa29I	ATCGAT	1 cut(s)	661
BsaAI	YACGTR	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	532
BsaJI	CCNNGG	2 cut(s)	379, 584
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 548
Bse118I	RCCGGY	1 cut(s)	541
Bse1I	ACTGG	2 cut(s)	153, 563
Bse3DI	GCAATG	1 cut(s)	39
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	3 cut(s)	380, 482, 585
BseCI	ATCGAT	1 cut(s)	661
BseDI	CCNNGG	2 cut(s)	379, 584
BseGI	GGATG	3 cut(s)	326, 460, 626
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	80, 548
BseMI	GCAATG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	153, 563
BseRI	GAGGAG	1 cut(s)	410
Bsh1236I	CGCG	2 cut(s)	127, 267
BshFI	GGCC	3 cut(s)	485, 517, 589
BshVI	ATCGAT	1 cut(s)	661
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	542
BsiWI	CGTACG	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	80, 548
BsmAI	GTCTC	2 cut(s)	164, 532
BsnI	GGCC	3 cut(s)	485, 517, 589
Bso31I	GGTCTC	1 cut(s)	532
Bsp119I	TTCGAA	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	289, 580
BspACI	CCGC	4 cut(s)	125, 215, 224, 267
BspANI	GGCC	3 cut(s)	485, 517, 589
BspDI	ATCGAT	1 cut(s)	661
BspFNI	CGCG	2 cut(s)	127, 267
BspLI	GGNNCC	2 cut(s)	479, 573
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	575
BspT104I	TTCGAA	1 cut(s)	313
BspTNI	GGTCTC	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	153, 563
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	2 cut(s)	379, 584
BssMI	GATC	2 cut(s)	289, 580
BssNAI	GTATAC	1 cut(s)	435
Bst1107I	GTATAC	1 cut(s)	435
Bst2UI	CCWGG	3 cut(s)	380, 482, 585
Bst6I	CTCTTC	3 cut(s)	100, 310, 387
BstAPI	GCANNNNNTGC	2 cut(s)	135, 173
BstBAI	YACGTR	1 cut(s)	507
BstBI	TTCGAA	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	302
BstF5I	GGATG	3 cut(s)	326, 460, 626
BstFNI	CGCG	2 cut(s)	127, 267
BstHHI	GCGC	2 cut(s)	46, 129
BstKTI	GATC	2 cut(s)	292, 583
BstMAI	GTCTC	2 cut(s)	164, 532
BstMBI	GATC	2 cut(s)	289, 580
BstMWI	GCNNNNNNNGC	5 cut(s)	135, 173, 223, 353, 367
BstNI	CCWGG	3 cut(s)	380, 482, 585
BstSCI	CCNGG	3 cut(s)	378, 480, 583
BstUI	CGCG	2 cut(s)	127, 267
BstV2I	GAAGAC	1 cut(s)	469
BstZ17I	GTATAC	1 cut(s)	435
Bsu15I	ATCGAT	1 cut(s)	661
BsuI	GTATCC	1 cut(s)	599
BsuRI	GGCC	3 cut(s)	485, 517, 589
BsuTUI	ATCGAT	1 cut(s)	661
BtsCI	GGATG	3 cut(s)	326, 460, 626
BtsIMutI	CAGTG	1 cut(s)	160
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	302
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	2 cut(s)	46, 129
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	587
ClaI	ATCGAT	1 cut(s)	661
Csp6I	GTAC	3 cut(s)	328, 349, 566
CspCI	CAANNNNNGTGG	2 cut(s)	582, 617
CviQI	GTAC	3 cut(s)	328, 349, 566
DpnI	GATC	2 cut(s)	291, 582
DpnII	GATC	2 cut(s)	289, 580
DraI	TTTAAA	1 cut(s)	423
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	3 cut(s)	100, 310, 387
EarI	CTCTTC	3 cut(s)	100, 310, 387
Eco31I	GGTCTC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	204
EcoRII	CCWGG	3 cut(s)	378, 480, 583
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FblI	GTMKAC	1 cut(s)	434
Fnu4HI	GCNGC	1 cut(s)	268
FokI	GGATG	3 cut(s)	333, 467, 633
Fsp4HI	GCNGC	1 cut(s)	268
FspI	TGCGCA	1 cut(s)	45
GlaI	GCGC	2 cut(s)	45, 128
GluI	GCNGC	1 cut(s)	268
GsuI	CTGGAG	1 cut(s)	136
HaeIII	GGCC	3 cut(s)	485, 517, 589
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	2 cut(s)	46, 129
Hin6I	GCGC	2 cut(s)	44, 127
HinP1I	GCGC	2 cut(s)	44, 127
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	3 cut(s)	191, 409, 428
HpaII	CCGG	1 cut(s)	542
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	1 cut(s)	234
Hpy8I	GTNNAC	1 cut(s)	435
HpyAV	CCTTC	2 cut(s)	237, 542
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	5 cut(s)	135, 173, 223, 353, 367
HpySE526I	ACGT	1 cut(s)	506
HspAI	GCGC	2 cut(s)	44, 127
Kzo9I	GATC	2 cut(s)	289, 580
LmnI	GCTCC	4 cut(s)	155, 206, 397, 477
LweI	GCATC	2 cut(s)	147, 311
MaeII	ACGT	1 cut(s)	506
MalI	GATC	2 cut(s)	291, 582
MboI	GATC	2 cut(s)	289, 580
MboII	GAAGA	5 cut(s)	12, 87, 327, 404, 474
MhlI	GDGCHC	1 cut(s)	262
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	1 cut(s)	276
MluNI	TGGCCA	1 cut(s)	485
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	5 cut(s)	37, 311, 328, 388, 517
Mox20I	TGGCCA	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	4 cut(s)	63, 246, 422, 657
Msp20I	TGGCCA	1 cut(s)	485
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	3 cut(s)	380, 482, 585
MvaI	CCWGG	3 cut(s)	380, 482, 585
MvnI	CGCG	2 cut(s)	127, 267
MwoI	GCNNNNNNNGC	5 cut(s)	135, 173, 223, 353, 367
NdeII	GATC	2 cut(s)	289, 580
NlaIV	GGNNCC	2 cut(s)	479, 573
NsbI	TGCGCA	1 cut(s)	45
NspV	TTCGAA	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	191, 409
Pfl23II	CGTACG	1 cut(s)	327
PkrI	GCNGC	1 cut(s)	269
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	507
PshBI	ATTAAT	1 cut(s)	63
Psp6I	CCWGG	3 cut(s)	378, 480, 583
PspGI	CCWGG	3 cut(s)	378, 480, 583
PspLI	CGTACG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	479, 573
PspPI	GGNCC	1 cut(s)	587
PstNI	CAGNNNCTG	1 cut(s)	173
RsaI	GTAC	3 cut(s)	329, 350, 567
RsaNI	GTAC	3 cut(s)	328, 349, 566
SaqAI	TTAA	4 cut(s)	63, 246, 422, 657
SatI	GCNGC	1 cut(s)	268
Sau3AI	GATC	2 cut(s)	289, 580
Sau96I	GGNCC	1 cut(s)	587
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	3 cut(s)	380, 482, 585
SduI	GDGCHC	1 cut(s)	262
SfaNI	GCATC	2 cut(s)	147, 311
SfuI	TTCGAA	1 cut(s)	313
Sse9I	AATT	1 cut(s)	276
SsiI	CCGC	4 cut(s)	125, 215, 224, 267
StyD4I	CCNGG	3 cut(s)	378, 480, 583
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	2 cut(s)	313, 661
TasI	AATT	1 cut(s)	276
TatI	WGTACW	1 cut(s)	565
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	2 cut(s)	191, 409
Tru1I	TTAA	4 cut(s)	63, 246, 422, 657
Tru9I	TTAA	4 cut(s)	63, 246, 422, 657
TscAI	CASTG	1 cut(s)	160
TspDTI	ATGAA	3 cut(s)	405, 601, 616
TspRI	CASTG	1 cut(s)	160
VspI	ATTAAT	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.