Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014099

Physical Location & Seq

Genomic Coordinates Forward (+)

53451924 .. 53452802

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0390300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGTACCTCCATTAATATTGTCACCGAAGAGAAGCTTCATGCCTTTTACAAGATTGATCGAGATCTCTTCTCTCGATTGGTCGTGAGCTTCATGCGTGACCCGGCTGAATCCCTTCTGGTGATGGCCTTATGGCTATGGCTGGAAAAGGACTACCCCAACATCATAGTCAAGATGTTGGGGCTTCCGGACAGCATAGTCAATGCCCTGGCTGATGAAGCTGTGCTTTGCTTGAGGTGTTTGGACTGCAGTACTAGTAACAGTACTCTTTTATGTCTAGCGCCAAACGGTCGAATTGTCCTCACTTCAAGGCTCATGCAGAAGGAAATCTCACTCCAAATGTTCATTCAGAACAGATACACTACAATCAGTGGGGTAAAGAATTTTCTCACTAATATTTGTGCTCGAATTTTCACTGATATTTTGCAGAGGGTTTTGCCTGGTACAAATCCAATACTGTCACAGTTTACTCATCCACAGCAGCCCCTTGTGATTCCGGGGTTTCCACATCCAGTGTTTGGTGCACTCAATATAATCCCGGGATTTGTTGCGGACTTTACTCCCACAGGAGGCTTATGGGGCTGGAACCCATCTATTGAGTTATCTGCTGATGACAGGACTATGTTTCTTACATTCTCAAGGGGGTTTCATGTGTCAGTGGAAGAAGTGAAGCAGCTTTTTTCAGAGGTTCTTGGGATGGAGAAGTGTGTTGAAGATGTGGACATGGAAAATGTTCCTTCTGATGAACAACCATTGTATGCTAAAATGGTGCTATCTTCTGTCACACTTGTTGATAAGATCTTGAAAGGGAATCGCGTCTCCAAGTTTCGGATCAATGGCAAGCACATCTGGGCTCGAAAATATGAACGCCGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0010598 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

292

Amino Acids

33.08

Weight (kDa)

6.53

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21430 AT5G21430
fragaria_vesca	FvH4_2g31130
malus_domestica	MD15G1051600.v1.1
prunus_persica	Prupe.1G405600_v2.0.a1 Prupe.1G405600_v2.0.a1
pyrus_communis	pycom15g04940
rosa_chinensis	RchiOBHm_Chr6g0311651
rosa_laevigata	RLG00000010384
rosa_multiflora	Rmu_sc0002888.1_g000007
rosa_roxburghii	Rroxscaffold_7G00157410
rosa_rugosa	Rorug06G0390300
rosa_samantha	Rh6AG505600 Rh6BG516400 Rh6CG522300 Rh6DG508100
rosa_wichuraiana	Rw6G044010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	197
AccB7I	CCANNNNNTGG	1 cut(s)	518
AccII	CGCG	1 cut(s)	816
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	1 cut(s)	551
AclWI	GGATC	1 cut(s)	839
AcsI	RAATTY	2 cut(s)	382, 408
AfaI	GTAC	4 cut(s)	7, 253, 265, 445
AfiI	CCNNNNNNNGG	3 cut(s)	518, 569, 828
AgsI	TTSAA	3 cut(s)	309, 713, 805
AhlI	ACTAGT	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	207, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	4 cut(s)	37, 90, 221, 676
AluI	AGCT	4 cut(s)	37, 90, 221, 676
Alw21I	GWGCWC	2 cut(s)	406, 526
Alw26I	GTCTC	2 cut(s)	823, 867
Alw44I	GTGCAC	1 cut(s)	522
AlwI	GGATC	1 cut(s)	839
Ama87I	CYCGRG	1 cut(s)	538
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	1 cut(s)	126
ApaLI	GTGCAC	1 cut(s)	522
ApeKI	GCWGC	2 cut(s)	481, 673
ApoI	RAATTY	2 cut(s)	382, 408
AseI	ATTAAT	1 cut(s)	15
Asp700I	GAANNNNTTC	2 cut(s)	114, 732
AspLEI	GCGC	1 cut(s)	283
AsuC2I	CCSGG	4 cut(s)	104, 498, 539, 540
AsuHPI	GGTGA	2 cut(s)	16, 133
AvaI	CYCGRG	1 cut(s)	538
BaeGI	GKGCMC	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	856
Bbv12I	GWGCWC	2 cut(s)	406, 526
BbvI	GCAGC	2 cut(s)	493, 685
BccI	CCATC	3 cut(s)	118, 598, 691
BciT130I	CCWGG	2 cut(s)	209, 441
BcnI	CCSGG	4 cut(s)	104, 498, 539, 540
BcoDI	GTCTC	2 cut(s)	823, 867
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	3 cut(s)	255, 278, 877
BfmI	CTRYAG	1 cut(s)	247
BfoI	RGCGCY	1 cut(s)	284
BglII	AGATCT	2 cut(s)	64, 798
BisI	GCNGC	2 cut(s)	482, 674
BlsI	GCNGC	2 cut(s)	483, 675
BmcAI	AGTACT	2 cut(s)	253, 265
Bme1390I	CCNGG	6 cut(s)	104, 209, 441, 498, 539, 540
BmeT110I	CYCGRG	1 cut(s)	538
BmiI	GGNNCC	1 cut(s)	587
BmrFI	CCNGG	6 cut(s)	104, 209, 441, 498, 539, 540
BpuEI	CTTGAG	2 cut(s)	253, 622
BpuMI	CCSGG	4 cut(s)	104, 498, 539, 540
BsaBI	GATNNNNATC	1 cut(s)	63
BsaJI	CCNNGG	3 cut(s)	207, 497, 538
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	3 cut(s)	518, 569, 828
Bse1I	ACTGG	1 cut(s)	512
Bse8I	GATNNNNATC	1 cut(s)	63
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	209, 441
BseDI	CCNNGG	3 cut(s)	207, 497, 538
BseGI	GGATG	3 cut(s)	472, 508, 702
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	3 cut(s)	518, 569, 828
BseNI	ACTGG	1 cut(s)	512
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	2 cut(s)	493, 685
Bsh1236I	CGCG	1 cut(s)	816
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	292
BsiHKAI	GWGCWC	2 cut(s)	406, 526
BsiHKCI	CYCGRG	1 cut(s)	538
BsiSI	CCGG	4 cut(s)	104, 188, 497, 539
BslI	CCNNNNNNNGG	3 cut(s)	518, 569, 828
BsmAI	GTCTC	2 cut(s)	823, 867
BsmBI	CGTCTC	1 cut(s)	823
BsnI	GGCC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	538
Bsp1286I	GDGCHC	3 cut(s)	406, 526, 856
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	4 cut(s)	58, 64, 798, 831
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	1 cut(s)	128
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	816
BspLI	GGNNCC	1 cut(s)	587
BspMAI	CTGCAG	1 cut(s)	251
BspPI	GGATC	1 cut(s)	839
BsrI	ACTGG	1 cut(s)	512
BssECI	CCNNGG	3 cut(s)	207, 497, 538
BssMI	GATC	4 cut(s)	58, 64, 798, 831
Bst2UI	CCWGG	2 cut(s)	209, 441
Bst4CI	ACNGT	4 cut(s)	263, 290, 459, 465
Bst6I	CTCTTC	2 cut(s)	24, 74
BstC8I	GCNNGC	1 cut(s)	842
BstF5I	GGATG	3 cut(s)	472, 508, 702
BstFNI	CGCG	1 cut(s)	816
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	4 cut(s)	61, 67, 801, 834
BstMAI	GTCTC	2 cut(s)	823, 867
BstMBI	GATC	4 cut(s)	58, 64, 798, 831
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 579
BstNI	CCWGG	2 cut(s)	209, 441
BstSCI	CCNGG	6 cut(s)	102, 207, 439, 496, 537, 538
BstSFI	CTRYAG	1 cut(s)	247
BstSLI	GKGCMC	1 cut(s)	526
BstUI	CGCG	1 cut(s)	816
BstV1I	GCAGC	2 cut(s)	493, 685
BstX2I	RGATCY	2 cut(s)	64, 798
BstYI	RGATCY	2 cut(s)	64, 798
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	3 cut(s)	472, 508, 702
BtsIMutI	CAGTG	4 cut(s)	376, 414, 519, 663
Cac8I	GCNNGC	1 cut(s)	842
CfoI	GCGC	1 cut(s)	283
Cfr9I	CCCGGG	1 cut(s)	538
CseI	GACGC	1 cut(s)	805
Csp6I	GTAC	4 cut(s)	6, 252, 264, 444
CviAII	CATG	5 cut(s)	41, 94, 316, 650, 724
CviQI	GTAC	4 cut(s)	6, 252, 264, 444
DpnI	GATC	4 cut(s)	60, 66, 800, 833
DpnII	GATC	4 cut(s)	58, 64, 798, 831
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
Eam1104I	CTCTTC	2 cut(s)	24, 74
EarI	CTCTTC	2 cut(s)	24, 74
Eco24I	GRGCYC	1 cut(s)	856
Eco88I	CYCGRG	1 cut(s)	538
EcoRII	CCWGG	2 cut(s)	207, 439
EcoT38I	GRGCYC	1 cut(s)	856
Esp3I	CGTCTC	1 cut(s)	823
FaeI	CATG	5 cut(s)	44, 97, 319, 653, 727
FalI	AAGNNNNNCTT	4 cut(s)	21, 53, 210, 242
FatI	CATG	5 cut(s)	40, 93, 315, 649, 723
Fnu4HI	GCNGC	2 cut(s)	482, 674
FokI	GGATG	3 cut(s)	459, 495, 709
FriOI	GRGCYC	1 cut(s)	856
Fsp4HI	GCNGC	2 cut(s)	482, 674
FspBI	CTAG	3 cut(s)	255, 278, 877
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	482, 674
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	4 cut(s)	104, 188, 497, 539
HgaI	GACGC	1 cut(s)	805
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	5 cut(s)	44, 97, 319, 653, 727
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	3 cut(s)	110, 493, 811
HpaII	CCGG	4 cut(s)	104, 188, 497, 539
HphI	GGTGA	2 cut(s)	16, 133
Hpy166II	GTNNAC	3 cut(s)	468, 524, 721
Hpy188I	TCNGA	4 cut(s)	351, 685, 742, 831
Hpy188III	TCNNGA	6 cut(s)	62, 75, 85, 172, 188, 802
Hpy8I	GTNNAC	3 cut(s)	468, 524, 721
HpyAV	CCTTC	3 cut(s)	125, 316, 747
HpyCH4III	ACNGT	4 cut(s)	263, 290, 459, 465
HpyCH4V	TGCA	4 cut(s)	249, 319, 427, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 579
Hsp92II	CATG	5 cut(s)	44, 97, 319, 653, 727
HspAI	GCGC	1 cut(s)	281
Kpn2I	TCCGGA	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	58, 64, 798, 831
Lsp1109I	GCAGC	2 cut(s)	493, 685
MaeI	CTAG	3 cut(s)	255, 278, 877
MaeIII	GTNAC	5 cut(s)	22, 98, 257, 459, 781
MalI	GATC	4 cut(s)	60, 66, 800, 833
MboI	GATC	4 cut(s)	58, 64, 798, 831
MboII	GAAGA	5 cut(s)	41, 61, 674, 725, 768
MflI	RGATCY	2 cut(s)	64, 798
MhlI	GDGCHC	3 cut(s)	406, 526, 856
MluCI	AATT	3 cut(s)	294, 382, 408
MnlI	CCTC	6 cut(s)	19, 228, 311, 423, 563, 679
MroI	TCCGGA	1 cut(s)	187
MroXI	GAANNNNTTC	2 cut(s)	114, 732
MseI	TTAA	1 cut(s)	15
MspI	CCGG	4 cut(s)	104, 188, 497, 539
MspR9I	CCNGG	6 cut(s)	104, 209, 441, 498, 539, 540
MvaI	CCWGG	2 cut(s)	209, 441
MvnI	CGCG	1 cut(s)	816
MwoI	GCNNNNNNNGC	2 cut(s)	218, 579
NciI	CCSGG	4 cut(s)	104, 498, 539, 540
NdeII	GATC	4 cut(s)	58, 64, 798, 831
NlaIII	CATG	5 cut(s)	44, 97, 319, 653, 727
NlaIV	GGNNCC	1 cut(s)	587
NmuCI	GTSAC	4 cut(s)	22, 98, 459, 781
PdmI	GAANNNNTTC	2 cut(s)	114, 732
PfeI	GAWTC	3 cut(s)	110, 493, 811
PflMI	CCANNNNNTGG	1 cut(s)	518
PkrI	GCNGC	2 cut(s)	483, 675
PshBI	ATTAAT	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	207, 439
PspGI	CCWGG	2 cut(s)	207, 439
PspN4I	GGNNCC	1 cut(s)	587
PstI	CTGCAG	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	64, 798
RsaI	GTAC	4 cut(s)	7, 253, 265, 445
RsaNI	GTAC	4 cut(s)	6, 252, 264, 444
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	2 cut(s)	482, 674
Sau3AI	GATC	4 cut(s)	58, 64, 798, 831
ScaI	AGTACT	2 cut(s)	253, 265
ScrFI	CCNGG	6 cut(s)	104, 209, 441, 498, 539, 540
SduI	GDGCHC	3 cut(s)	406, 526, 856
SetI	ASST	7 cut(s)	11, 39, 92, 223, 239, 678, 690
SfcI	CTRYAG	1 cut(s)	247
SmaI	CCCGGG	1 cut(s)	540
SmlI	CTYRAG	2 cut(s)	232, 637
SmoI	CTYRAG	2 cut(s)	232, 637
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	3 cut(s)	294, 382, 408
SsiI	CCGC	1 cut(s)	551
SspI	AATATT	2 cut(s)	19, 397
SspMI	CTAG	3 cut(s)	255, 278, 877
StyD4I	CCNGG	6 cut(s)	102, 207, 439, 496, 537, 538
TaaI	ACNGT	4 cut(s)	263, 290, 459, 465
TaqI	TCGA	5 cut(s)	61, 76, 292, 406, 856
TasI	AATT	3 cut(s)	294, 382, 408
TatI	WGTACW	2 cut(s)	251, 263
TfiI	GAWTC	3 cut(s)	110, 493, 811
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	4 cut(s)	376, 421, 519, 663
TseFI	GTSAC	4 cut(s)	22, 98, 459, 781
TseI	GCWGC	2 cut(s)	481, 673
Tsp45I	GTSAC	4 cut(s)	22, 98, 459, 781
TspDTI	ATGAA	7 cut(s)	29, 82, 231, 334, 638, 759, 879
TspMI	CCCGGG	1 cut(s)	538
TspRI	CASTG	4 cut(s)	376, 421, 519, 663
Van91I	CCANNNNNTGG	1 cut(s)	518
VneI	GTGCAC	1 cut(s)	522
VspI	ATTAAT	1 cut(s)	15
XapI	RAATTY	2 cut(s)	382, 408
XmaI	CCCGGG	1 cut(s)	538
XmnI	GAANNNNTTC	2 cut(s)	114, 732
XspI	CTAG	3 cut(s)	255, 278, 877
ZrmI	AGTACT	2 cut(s)	253, 265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.