Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006155

Physical Location & Seq

Genomic Coordinates Reverse (-)

8129979 .. 8133301

Gene Structure 3323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGCCGTCCCCGGGTTCTTCTCTTCCATGGCGCTTCTCCGGCATTGTCCTGTATCGAACACAGAGGACGGAGGAGGAAGCTTCTTCCATGTCGCTCCTCGCCGAACTTTTCGTCCTCACCTCCTCAACACTAGTTCTGGAAAATACCTGCGGAGGAATAGGACTCAAGCTATAGCAGAGTATTTGGGTTCAGCTTCAGATCCTAAGAAGCCAACTGGGAAGTCAAGTTATCATCCTTCAGAAGATATCAGAGCATATGTGCCAGAGAAGAATCCTGGAGATTCTAGGCTTTCACCTCCTGAAACTGCTAGAACCATCATTGAGGTGAACAAAAAAGGAACCCTGATGCTCTCAGGTTTACTTGGTATTGGAGTTCATGAGAATATTCTCTGGCCGGATATACCTTATGTCACAGATCAGCATGGAAATATATATTTTCAAGTAAAGGAAAATGAGGACATAATGCAGACTGTTGTTACATCTGATAATAATTATGTGCAAGTAATAGTAGGTTTTGATACGATGGAGATGATCAAGGACATGGAGCTGAGCAGTCCATCTGGTATTGGTTTTGGGATTGAAGAAATCGAAGATGGTGAAAGTGAAGTTGAGGATGAAAACAAGGGCGATGAGGATGAAGGAGAAGACAAAGATGACGAGGAATGGGTTGCTGTTCTAGAAGATGGAGATGACGAGGATAACTATGTCTCAGACTCTGATGAATCACTTGGAGACTGGGCAAACTTGGAAACGATGCGATATTGCCATCCTATGTATTTTGCCAGGAGGATGGCCGAGGTTGCTTCAACTGATCCTGTAAATTGGATGGATCAGCCGTCCGCTGGCCTTGCTATCCAAGGGCTCTTGAGTCCTGTCATTGTGGAAGATCACTCAGATATCCAAAAACATATCTCTGGTTGTATATCTACAGGCACTGACAAAAACAAGGAGAGAGAAAACTCAGAAGAGATATTTGAAGGCATTGGTGAGAATGAATCTGAGATATTGCATGTTGAAAATTCGAGAAATGCTATACAGTACTACAAGCTGGAGATAATAAGAATCCAGCTCATCACGGCACAGGGGCATCAGACTGAAGTGGAAGTGGAAGACGTCAGGAAAGCACAACCTGATGTTATTGCTTGTGCATCAGATGGTATACTGACTCGTCTAGAAGAAGATGGCGATAAACTAACTGAAGCTCTCAGATCTCTGTGTTGGAGAAATAATGGGATTCAAGCAGAGGAAGTGAAGCTCATTGGGATAGATTCACTTGGTTTCGACCTTAGGATTTGCTCAGGAATGCAAATTGAGACATTACGGTTTGCATTCTCGATAAGGGCAACATCAGAACACAACGCTGAGGGACAGTTGAGAGAATTATTATTCGCTTCTACACCTTCCAAGCCGCAGAAACCAAAACAAACGAATCAAAAGGAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

481

Amino Acids

53.72

Weight (kDa)

4.58

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49140 AT5G24060 AT5G24060 AT5G24060
fragaria_vesca	FvH4_7g30410 FvH4_7g30410 FvH4_7g30410 FvH4_7g30410 FvH4_7g30410 FvH4_7g30410
malus_domestica	MD01G1209500.v1.1 MD07G1279800.v1.1
prunus_persica	Prupe.2G302100_v2.0.a1 Prupe.2G302100_v2.0.a1
pyrus_communis	pycom01g21990 pycom01g22000 pycom07g25450
rosa_chinensis	RchiOBHm_Chr1g0378561
rosa_multiflora	Rmu_sc0002395.1_g000006 Rmu_sc0008712.1_g000004
rosa_rugosa	Rorug01G0409700 Rorug01G0409700
rosa_samantha	Rh1AG430900 Rh1BG389200 Rh1CG402600 Rh1DG420400
rosa_wichuraiana	Rw1G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1116
Acc36I	ACCTGC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	1159
AciI	CCGC	3 cut(s)	151, 840, 1409
AclWI	GGATC	3 cut(s)	194, 806, 837
AcoI	YGGCCR	3 cut(s)	3, 392, 792
AcsI	RAATTY	1 cut(s)	1018
AcuI	CTGAAG	4 cut(s)	180, 222, 1116, 1218
AcyI	GRCGYC	1 cut(s)	1113
AfaI	GTAC	1 cut(s)	1040
AfiI	CCNNNNNNNGG	2 cut(s)	12, 842
AgsI	TTSAA	6 cut(s)	440, 581, 807, 977, 1016, 1238
AhlI	ACTAGT	1 cut(s)	131
AjnI	CCWGG	2 cut(s)	274, 782
AloI	GAACNNNNNNTCC	2 cut(s)	97, 129
AluBI	AGCT	8 cut(s)	81, 170, 194, 547, 1048, 1069, 1202, 1255
AluI	AGCT	8 cut(s)	81, 170, 194, 547, 1048, 1069, 1202, 1255
Alw26I	GTCTC	3 cut(s)	712, 726, 1307
AlwI	GGATC	3 cut(s)	194, 806, 837
AlwNI	CAGNNNCTG	2 cut(s)	716, 935
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	4 cut(s)	3, 392, 792, 844
ApoI	RAATTY	1 cut(s)	1018
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
AspLEI	GCGC	1 cut(s)	34
AsuC2I	CCSGG	2 cut(s)	12, 13
AsuHPI	GGTGA	5 cut(s)	110, 285, 337, 608, 998
AvaI	CYCGRG	1 cut(s)	11
AxyI	CCTNAGG	1 cut(s)	1286
BanII	GRGCYC	1 cut(s)	864
BbsI	GAAGAC	2 cut(s)	651, 1116
BbvCI	CCTCAGC	1 cut(s)	1362
BceAI	ACGGC	2 cut(s)	820, 1092
BciT130I	CCWGG	2 cut(s)	276, 784
BclI	TGATCA	1 cut(s)	531
BcnI	CCSGG	2 cut(s)	12, 13
BcoDI	GTCTC	3 cut(s)	712, 726, 1307
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	5 cut(s)	132, 285, 309, 677, 1172
BfmI	CTRYAG	2 cut(s)	171, 927
BfoI	RGCGCY	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	156
BglII	AGATCT	1 cut(s)	1208
BisI	GCNGC	1 cut(s)	1409
BlpI	GCTNAGC	1 cut(s)	548
BlsI	GCNGC	1 cut(s)	1410
BmcAI	AGTACT	1 cut(s)	1040
Bme1390I	CCNGG	4 cut(s)	12, 13, 276, 784
BmeT110I	CYCGRG	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	4 cut(s)	12, 13, 276, 784
BmrI	ACTGGG	2 cut(s)	225, 745
BmsI	GCATC	4 cut(s)	336, 744, 1096, 1157
BmuI	ACTGGG	2 cut(s)	225, 745
BpiI	GAAGAC	2 cut(s)	651, 1116
BpmI	CTGGAG	2 cut(s)	297, 1070
Bpu10I	CCTNAGC	2 cut(s)	1297, 1362
Bpu1102I	GCTNAGC	1 cut(s)	548
BpuEI	CTTGAG	2 cut(s)	150, 886
BpuMI	CCSGG	2 cut(s)	12, 13
BsaHI	GRCGYC	1 cut(s)	1113
BsaJI	CCNNGG	5 cut(s)	10, 11, 27, 795, 856
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 842
Bse1I	ACTGG	2 cut(s)	220, 740
Bse21I	CCTNAGG	1 cut(s)	1286
BseBI	CCWGG	2 cut(s)	276, 784
BseDI	CCNNGG	5 cut(s)	10, 11, 27, 795, 856
BseGI	GGATG	6 cut(s)	232, 619, 640, 766, 795, 831
BseLI	CCNNNNNNNGG	2 cut(s)	12, 842
BseMII	CTCAG	9 cut(s)	366, 539, 723, 906, 975, 990, 1219, 1311, 1353
BseNI	ACTGG	2 cut(s)	220, 740
BseRI	GAGGAG	3 cut(s)	87, 87, 113
BshFI	GGCC	4 cut(s)	5, 394, 794, 846
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	3 cut(s)	12, 40, 395
BslFI	GGGAC	1 cut(s)	1380
BslI	CCNNNNNNNGG	2 cut(s)	12, 842
BsmAI	GTCTC	3 cut(s)	712, 726, 1307
BsmFI	GGGAC	1 cut(s)	1380
BsmI	GAATGC	2 cut(s)	1308, 1328
BsnI	GGCC	4 cut(s)	5, 394, 794, 846
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	864
Bsp143I	GATC	7 cut(s)	199, 415, 531, 811, 829, 886, 1208
Bsp1720I	GCTNAGC	1 cut(s)	548
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	3 cut(s)	151, 840, 1409
BspANI	GGCC	4 cut(s)	5, 394, 794, 846
BspCNI	CTCAG	9 cut(s)	365, 540, 722, 905, 974, 991, 1218, 1310, 1354
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	3 cut(s)	194, 806, 837
BsrI	ACTGG	2 cut(s)	220, 740
BssECI	CCNNGG	5 cut(s)	10, 11, 27, 795, 856
BssMI	GATC	7 cut(s)	199, 415, 531, 811, 829, 886, 1208
BssNAI	GTATAC	1 cut(s)	1160
BssNI	GRCGYC	1 cut(s)	1113
BssT1I	CCWWGG	2 cut(s)	27, 856
Bst1107I	GTATAC	1 cut(s)	1160
Bst2UI	CCWGG	2 cut(s)	276, 784
Bst4CI	ACNGT	4 cut(s)	472, 1038, 1323, 1371
Bst6I	CTCTTC	2 cut(s)	28, 960
BstACI	GRCGYC	1 cut(s)	1113
BstC8I	GCNNGC	1 cut(s)	844
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	6 cut(s)	232, 619, 640, 766, 795, 831
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	7 cut(s)	202, 418, 534, 814, 832, 889, 1211
BstMAI	GTCTC	3 cut(s)	712, 726, 1307
BstMBI	GATC	7 cut(s)	199, 415, 531, 811, 829, 886, 1208
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 800, 848
BstNI	CCWGG	2 cut(s)	276, 784
BstNSI	RCATGY	1 cut(s)	1013
BstSCI	CCNGG	4 cut(s)	10, 11, 274, 782
BstSFI	CTRYAG	2 cut(s)	171, 927
BstV2I	GAAGAC	2 cut(s)	651, 1116
BstX2I	RGATCY	2 cut(s)	199, 1208
BstXI	CCANNNNNNTGG	1 cut(s)	790
BstYI	RGATCY	2 cut(s)	199, 1208
BstZ17I	GTATAC	1 cut(s)	1160
Bsu36I	CCTNAGG	1 cut(s)	1286
BsuRI	GGCC	4 cut(s)	5, 394, 794, 846
BtgI	CCRYGG	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	642
BtsCI	GGATG	6 cut(s)	232, 619, 640, 766, 795, 831
BtsIMutI	CAGTG	1 cut(s)	933
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	844
CaiI	CAGNNNCTG	2 cut(s)	716, 935
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	34
Cfr9I	CCCGGG	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	1039
CviAII	CATG	6 cut(s)	28, 89, 377, 422, 541, 1010
CviQI	GTAC	1 cut(s)	1039
DpnI	GATC	7 cut(s)	201, 417, 533, 813, 831, 888, 1210
DpnII	GATC	7 cut(s)	199, 415, 531, 811, 829, 886, 1208
EaeI	YGGCCR	3 cut(s)	3, 392, 792
Eam1104I	CTCTTC	2 cut(s)	28, 960
EarI	CTCTTC	2 cut(s)	28, 960
Eco130I	CCWWGG	2 cut(s)	27, 856
Eco24I	GRGCYC	1 cut(s)	864
Eco32I	GATATC	2 cut(s)	247, 898
Eco57I	CTGAAG	4 cut(s)	180, 222, 1116, 1218
Eco81I	CCTNAGG	1 cut(s)	1286
Eco88I	CYCGRG	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	274, 782
EcoRV	GATATC	2 cut(s)	247, 898
EcoT14I	CCWWGG	2 cut(s)	27, 856
EcoT38I	GRGCYC	1 cut(s)	864
ErhI	CCWWGG	2 cut(s)	27, 856
FaeI	CATG	6 cut(s)	31, 92, 380, 425, 544, 1013
FaqI	GGGAC	1 cut(s)	1380
FatI	CATG	6 cut(s)	27, 88, 376, 421, 540, 1009
FauNDI	CATATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	531
FblI	GTMKAC	1 cut(s)	1159
Fnu4HI	GCNGC	1 cut(s)	1409
FokI	GGATG	6 cut(s)	219, 626, 647, 753, 802, 838
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	1 cut(s)	1409
FspBI	CTAG	5 cut(s)	132, 285, 309, 677, 1172
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	1409
GsuI	CTGGAG	2 cut(s)	297, 1070
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	4 cut(s)	5, 394, 794, 846
HapII	CCGG	3 cut(s)	12, 40, 395
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	1113
Hin1II	CATG	6 cut(s)	31, 92, 380, 425, 544, 1013
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HindIII	AAGCTT	1 cut(s)	79
HpaII	CCGG	3 cut(s)	12, 40, 395
HphI	GGTGA	5 cut(s)	110, 285, 337, 608, 998
Hpy166II	GTNNAC	3 cut(s)	328, 359, 1160
Hpy8I	GTNNAC	3 cut(s)	328, 359, 1160
HpyAV	CCTTC	4 cut(s)	246, 632, 971, 1410
HpyCH4III	ACNGT	4 cut(s)	472, 1038, 1323, 1371
HpyCH4IV	ACGT	1 cut(s)	1113
HpyCH4V	TGCA	6 cut(s)	466, 499, 1009, 1148, 1306, 1328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 800, 848
HpySE526I	ACGT	1 cut(s)	1113
Hsp92I	GRCGYC	1 cut(s)	1113
Hsp92II	CATG	6 cut(s)	31, 92, 380, 425, 544, 1013
HspAI	GCGC	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	7 cut(s)	199, 415, 531, 811, 829, 886, 1208
LmnI	GCTCC	2 cut(s)	100, 544
LweI	GCATC	4 cut(s)	336, 744, 1096, 1157
MaeI	CTAG	5 cut(s)	132, 285, 309, 677, 1172
MaeII	ACGT	1 cut(s)	1113
MaeIII	GTNAC	2 cut(s)	409, 475
MalI	GATC	7 cut(s)	201, 417, 533, 813, 831, 888, 1210
MboI	GATC	7 cut(s)	199, 415, 531, 811, 829, 886, 1208
MflI	RGATCY	2 cut(s)	199, 1208
MhlI	GDGCHC	1 cut(s)	864
MluCI	AATT	5 cut(s)	490, 820, 1018, 1308, 1379
MlyI	GAGTC	4 cut(s)	157, 707, 877, 1159
MmeI	TCCRAC	1 cut(s)	1199
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	3 cut(s)	12, 40, 395
MspR9I	CCNGG	4 cut(s)	12, 13, 276, 784
Mva1269I	GAATGC	2 cut(s)	1308, 1328
MvaI	CCWGG	2 cut(s)	276, 784
MwoI	GCNNNNNNNGC	3 cut(s)	40, 800, 848
NciI	CCSGG	2 cut(s)	12, 13
NcoI	CCATGG	1 cut(s)	27
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	7 cut(s)	199, 415, 531, 811, 829, 886, 1208
NlaIII	CATG	6 cut(s)	31, 92, 380, 425, 544, 1013
NlaIV	GGNNCC	1 cut(s)	340
NmeAIII	GCCGAG	1 cut(s)	820
NmuCI	GTSAC	1 cut(s)	409
NspI	RCATGY	1 cut(s)	1013
PagI	TCATGA	1 cut(s)	376
PctI	GAATGC	2 cut(s)	1308, 1328
PfeI	GAWTC	9 cut(s)	271, 281, 722, 995, 1062, 1234, 1268, 1429, 1439
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	1410
PleI	GAGTC	4 cut(s)	157, 707, 876, 1159
PpsI	GAGTC	4 cut(s)	157, 707, 876, 1159
Psp6I	CCWGG	2 cut(s)	274, 782
PspGI	CCWGG	2 cut(s)	274, 782
PspN4I	GGNNCC	1 cut(s)	340
PstNI	CAGNNNCTG	2 cut(s)	716, 935
PsuI	RGATCY	2 cut(s)	199, 1208
RsaI	GTAC	1 cut(s)	1040
RsaNI	GTAC	1 cut(s)	1039
RseI	CAYNNNNRTG	1 cut(s)	323
SatI	GCNGC	1 cut(s)	1409
Sau3AI	GATC	7 cut(s)	199, 415, 531, 811, 829, 886, 1208
ScaI	AGTACT	1 cut(s)	1040
SchI	GAGTC	4 cut(s)	157, 707, 877, 1159
ScrFI	CCNGG	4 cut(s)	12, 13, 276, 784
SduI	GDGCHC	1 cut(s)	864
SfaNI	GCATC	4 cut(s)	336, 744, 1096, 1157
SfcI	CTRYAG	2 cut(s)	171, 927
SmaI	CCCGGG	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	165, 865
SmoI	CTYRAG	2 cut(s)	165, 865
SpeI	ACTAGT	1 cut(s)	131
Sse9I	AATT	5 cut(s)	490, 820, 1018, 1308, 1379
SsiI	CCGC	3 cut(s)	151, 840, 1409
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	5 cut(s)	132, 285, 309, 677, 1172
StyD4I	CCNGG	4 cut(s)	10, 11, 274, 782
StyI	CCWWGG	2 cut(s)	27, 856
TaaI	ACNGT	4 cut(s)	472, 1038, 1323, 1371
TaiI	ACGT	1 cut(s)	1116
TaqI	TCGA	5 cut(s)	56, 588, 1022, 1281, 1334
TasI	AATT	5 cut(s)	490, 820, 1018, 1308, 1379
TatI	WGTACW	1 cut(s)	1038
TauI	GCSGC	1 cut(s)	1411
TfiI	GAWTC	9 cut(s)	271, 281, 722, 995, 1062, 1234, 1268, 1429, 1439
TscAI	CASTG	1 cut(s)	940
TseFI	GTSAC	1 cut(s)	409
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	5 cut(s)	365, 630, 651, 735, 1008
TspGWI	ACGGA	1 cut(s)	84
TspMI	CCCGGG	1 cut(s)	11
TspRI	CASTG	1 cut(s)	940
XapI	RAATTY	1 cut(s)	1018
XbaI	TCTAGA	2 cut(s)	676, 1171
XceI	RCATGY	1 cut(s)	1013
XmaI	CCCGGG	1 cut(s)	11
XmiI	GTMKAC	1 cut(s)	1159
XspI	CTAG	5 cut(s)	132, 285, 309, 677, 1172
ZraI	GACGTC	1 cut(s)	1114
ZrmI	AGTACT	1 cut(s)	1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.