Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006155

Physical Location & Seq

Genomic Coordinates Reverse (-)

51574729 .. 51580475

Gene Structure 5747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG389200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTTTTCGAGTCTGATTAATGATGAGGTTCATGAAAATATTATGTGTCCTGATTTGCCTTATGTAACTGATGAACATGGAAATATATACTTTCAAGTAAAGGATGGTGAAGACAATGCGTCTATGCAATCCATAACTTCAGAGAACAACTTTGTGCAAGTTATTATTGGCTTAGATACTATGGAAATGATCAATGAGATGGAAGTACCAGAAATTGATTTTGGAATTGATGAGATTGAAGGTGAATATAGTGATGGTGAAGATGACAATGATGAGGACGACGACGACGATGAAGATGGTGACGATGATTCGGATTGGGTTTCCGTTCTTGACGACGAAGATGAAGAAGATGACGATGAAGATGACGAGACTCTTGGAGACTGGGCAAAGCTGGAGACTATGCGTTATTCTCACCCAATGTATTTTGCCAAGAAGCTGGCTGAGGTTGCTTCAGATGATCCTATAGATTGGGCAGAGCAGGCTCCAGCTAGTTTGGCAATTCAGGGGCTTCTAAGACCTGCATATATTGAAGAACATACGGTCATAAAAAAGCATATGTCGGATCATGAGCCCAATGACGATGAAAAACAAGTTGGGAGAACTGTAGAAGATGATTTAGAAGAGCCTGATAAGATCAATGGCCATGAATCAGGATCTTTCAAGGGCAGTCCAATCCGAGCGGAGGAATCAGACAATGAGAAGGGTGAAATACCAAAGAATGGGACTACTTTTTACAAACTGGAGATTGTGAAGATTCAGTTGTTTTCATCACATGGACATCAGAGTGTTGTTGAAGTAGAAGACTTCATAAAAGCTCAGCCTGATGCCATTGCACACTCAGCTGCTAAAATTATATCTCGTCTGAAAGCAGGTGGAGAAAAGACCACACAAGCTCTCAAGTCCCTTTGTTGGAGACTAAAGGGTATTCAAGTTGAGGAGGTAGTACTTACCGGTGTAGATTCTCTTGGATTTGACTTGAGGGTTTGCTCAGGAACACAAGTTCAGACGTTGCGGTTTGCACTAAATGCACAGGTATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

346

Amino Acids

38.76

Weight (kDa)

4.11

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49140 AT5G24060 AT5G24060 AT5G24060
fragaria_vesca	FvH4_7g30410 FvH4_7g30410 FvH4_7g30410 FvH4_7g30410 FvH4_7g30410 FvH4_7g30410
malus_domestica	MD01G1209500.v1.1 MD07G1279800.v1.1
prunus_persica	Prupe.2G302100_v2.0.a1 Prupe.2G302100_v2.0.a1
pyrus_communis	pycom01g21990 pycom01g22000 pycom07g25450
rosa_chinensis	RchiOBHm_Chr1g0378561
rosa_multiflora	Rmu_sc0002395.1_g000006 Rmu_sc0008712.1_g000004
rosa_rugosa	Rorug01G0409700 Rorug01G0409700
rosa_samantha	Rh1AG430900 Rh1BG389200 Rh1CG402600 Rh1DG420400
rosa_wichuraiana	Rw1G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	860
Acc36I	ACCTGC	2 cut(s)	526, 860
AccB7I	CCANNNNNTGG	1 cut(s)	719
AccBSI	CCGCTC	1 cut(s)	680
AciI	CCGC	2 cut(s)	680, 1012
AclWI	GGATC	3 cut(s)	452, 570, 661
AcoI	YGGCCR	1 cut(s)	640
AcuI	CTGAAG	2 cut(s)	123, 435
AfaI	GTAC	2 cut(s)	207, 945
AfiI	CCNNNNNNNGG	3 cut(s)	682, 719, 909
AgeI	ACCGGT	1 cut(s)	950
AgsI	TTSAA	6 cut(s)	95, 239, 530, 661, 794, 929
AhdI	GACNNNNNGTC	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	4 cut(s)	204, 236, 576, 608
AloI	GAACNNNNNNTCC	2 cut(s)	984, 1016
AluBI	AGCT	6 cut(s)	391, 436, 488, 815, 842, 893
AluI	AGCT	6 cut(s)	391, 436, 488, 815, 842, 893
Alw26I	GTCTC	4 cut(s)	362, 372, 389, 907
AlwI	GGATC	3 cut(s)	452, 570, 661
AoxI	GGCC	1 cut(s)	640
ApeKI	GCWGC	1 cut(s)	842
AseI	ATTAAT	1 cut(s)	18
AsiGI	ACCGGT	1 cut(s)	950
AsuHPI	GGTGA	6 cut(s)	119, 254, 269, 311, 404, 716
BalI	TGGCCA	1 cut(s)	642
BanII	GRGCYC	1 cut(s)	573
BbsI	GAAGAC	2 cut(s)	117, 807
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	829
BccI	CCATC	4 cut(s)	98, 193, 248, 290
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	4 cut(s)	362, 372, 389, 907
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	2 cut(s)	462, 603
BfuAI	ACCTGC	2 cut(s)	526, 860
BisI	GCNGC	1 cut(s)	843
BlpI	GCTNAGC	1 cut(s)	816
BlsI	GCNGC	1 cut(s)	844
BmcAI	AGTACT	1 cut(s)	945
BmeRI	GACNNNNNGTC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	483
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	1 cut(s)	814
BmuI	ACTGGG	1 cut(s)	391
BpiI	GAAGAC	2 cut(s)	117, 807
BpmI	CTGGAG	3 cut(s)	413, 468, 761
Bpu10I	CCTNAGC	2 cut(s)	441, 988
Bpu1102I	GCTNAGC	1 cut(s)	816
BpuEI	CTTGAG	2 cut(s)	881, 997
BsaWI	WCCGGW	1 cut(s)	950
Bsc4I	CCNNNNNNNGG	3 cut(s)	682, 719, 909
Bse118I	RCCGGY	1 cut(s)	950
Bse1I	ACTGG	2 cut(s)	386, 744
Bse3DI	GCAATG	1 cut(s)	828
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	3 cut(s)	682, 719, 909
BseMI	GCAATG	1 cut(s)	828
BseMII	CTCAG	4 cut(s)	432, 830, 852, 1002
BseNI	ACTGG	2 cut(s)	386, 744
BseRI	GAGGAG	1 cut(s)	950
BseXI	GCAGC	1 cut(s)	829
BshFI	GGCC	1 cut(s)	642
BshTI	ACCGGT	1 cut(s)	950
BsiSI	CCGG	1 cut(s)	951
BslFI	GGGAC	2 cut(s)	736, 886
BslI	CCNNNNNNNGG	3 cut(s)	682, 719, 909
BsmAI	GTCTC	4 cut(s)	362, 372, 389, 907
BsmFI	GGGAC	2 cut(s)	736, 886
BsnI	GGCC	1 cut(s)	642
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	5 cut(s)	189, 457, 562, 633, 653
Bsp1720I	GCTNAGC	1 cut(s)	816
BspACI	CCGC	2 cut(s)	680, 1012
BspANI	GGCC	1 cut(s)	642
BspCNI	CTCAG	4 cut(s)	433, 829, 851, 1001
BspHI	TCATGA	2 cut(s)	31, 565
BspLI	GGNNCC	1 cut(s)	483
BspMI	ACCTGC	2 cut(s)	526, 860
BspPI	GGATC	3 cut(s)	452, 570, 661
BspQI	GCTCTTC	1 cut(s)	615
BsrBI	CCGCTC	1 cut(s)	680
BsrDI	GCAATG	1 cut(s)	828
BsrFI	RCCGGY	1 cut(s)	950
BsrI	ACTGG	2 cut(s)	386, 744
BssAI	RCCGGY	1 cut(s)	950
BssMI	GATC	5 cut(s)	189, 457, 562, 633, 653
Bst4CI	ACNGT	2 cut(s)	541, 604
Bst6I	CTCTTC	1 cut(s)	615
BstAPI	GCANNNNNTGC	1 cut(s)	1025
BstC8I	GCNNGC	2 cut(s)	438, 480
BstDEI	CTNAG	6 cut(s)	172, 441, 512, 816, 838, 988
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	5 cut(s)	192, 460, 565, 636, 656
BstMAI	GTCTC	4 cut(s)	362, 372, 389, 907
BstMBI	GATC	5 cut(s)	189, 457, 562, 633, 653
BstMWI	GCNNNNNNNGC	5 cut(s)	446, 479, 494, 839, 1025
BstSFI	CTRYAG	2 cut(s)	462, 603
BstV1I	GCAGC	1 cut(s)	829
BstV2I	GAAGAC	2 cut(s)	117, 807
BstX2I	RGATCY	1 cut(s)	653
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	653
BsuRI	GGCC	1 cut(s)	642
BtsCI	GGATG	1 cut(s)	109
BveI	ACCTGC	2 cut(s)	526, 860
Cac8I	GCNNGC	2 cut(s)	438, 480
CciI	TCATGA	2 cut(s)	31, 565
Cfr10I	RCCGGY	1 cut(s)	950
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	206, 944
CspAI	ACCGGT	1 cut(s)	950
CviAII	CATG	5 cut(s)	32, 77, 566, 644, 773
CviQI	GTAC	2 cut(s)	206, 944
DdeI	CTNAG	6 cut(s)	172, 441, 512, 816, 838, 988
DpnI	GATC	5 cut(s)	191, 459, 564, 635, 655
DpnII	GATC	5 cut(s)	189, 457, 562, 633, 653
DriI	GACNNNNNGTC	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	640
Eam1104I	CTCTTC	1 cut(s)	615
Eam1105I	GACNNNNNGTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	615
Eco24I	GRGCYC	1 cut(s)	573
Eco57I	CTGAAG	2 cut(s)	123, 435
EcoT38I	GRGCYC	1 cut(s)	573
FaeI	CATG	5 cut(s)	35, 80, 569, 647, 776
FaqI	GGGAC	2 cut(s)	736, 886
FatI	CATG	5 cut(s)	31, 76, 565, 643, 772
FauNDI	CATATG	1 cut(s)	555
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	843
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	1 cut(s)	843
FspBI	CTAG	1 cut(s)	489
GluI	GCNGC	1 cut(s)	843
GsuI	CTGGAG	3 cut(s)	413, 468, 761
HaeIII	GGCC	1 cut(s)	642
HapII	CCGG	1 cut(s)	951
HgaI	GACGC	1 cut(s)	108
Hin1II	CATG	5 cut(s)	35, 80, 569, 647, 776
HinfI	GANTC	7 cut(s)	10, 308, 370, 647, 686, 754, 959
HpaII	CCGG	1 cut(s)	951
HphI	GGTGA	6 cut(s)	119, 254, 269, 311, 404, 716
Hpy188III	TCNNGA	6 cut(s)	32, 50, 329, 566, 651, 990
Hpy99I	CGWCG	4 cut(s)	284, 287, 290, 338
HpyAV	CCTTC	2 cut(s)	233, 694
HpyCH4III	ACNGT	2 cut(s)	541, 604
HpyCH4IV	ACGT	1 cut(s)	1007
HpyCH4V	TGCA	6 cut(s)	127, 157, 521, 833, 1019, 1028
HpyF10VI	GCNNNNNNNGC	5 cut(s)	446, 479, 494, 839, 1025
HpyF3I	CTNAG	6 cut(s)	172, 441, 512, 816, 838, 988
HpySE526I	ACGT	1 cut(s)	1007
Hsp92II	CATG	5 cut(s)	35, 80, 569, 647, 776
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	5 cut(s)	189, 457, 562, 633, 653
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	1 cut(s)	829
LweI	GCATC	1 cut(s)	814
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	1 cut(s)	1007
MaeIII	GTNAC	2 cut(s)	64, 299
MalI	GATC	5 cut(s)	191, 459, 564, 635, 655
MbiI	CCGCTC	1 cut(s)	680
MboI	GATC	5 cut(s)	189, 457, 562, 633, 653
MflI	RGATCY	1 cut(s)	653
MhlI	GDGCHC	1 cut(s)	573
MlsI	TGGCCA	1 cut(s)	642
MluCI	AATT	4 cut(s)	213, 225, 498, 849
MluNI	TGGCCA	1 cut(s)	642
MlyI	GAGTC	2 cut(s)	19, 364
MmeI	TCCRAC	2 cut(s)	540, 890
MnlI	CCTC	7 cut(s)	19, 268, 436, 676, 928, 931, 972
Mox20I	TGGCCA	1 cut(s)	642
MscI	TGGCCA	1 cut(s)	642
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	2 cut(s)	783, 1033
Msp20I	TGGCCA	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	1 cut(s)	951
MwoI	GCNNNNNNNGC	5 cut(s)	446, 479, 494, 839, 1025
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	5 cut(s)	189, 457, 562, 633, 653
NlaIII	CATG	5 cut(s)	35, 80, 569, 647, 776
NlaIV	GGNNCC	1 cut(s)	483
NmuCI	GTSAC	1 cut(s)	299
PagI	TCATGA	2 cut(s)	31, 565
PaqCI	CACCTGC	1 cut(s)	860
PciSI	GCTCTTC	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	5 cut(s)	308, 647, 686, 754, 959
PflMI	CCANNNNNTGG	1 cut(s)	719
PinAI	ACCGGT	1 cut(s)	950
PkrI	GCNGC	1 cut(s)	844
PleI	GAGTC	2 cut(s)	18, 364
PpsI	GAGTC	2 cut(s)	18, 364
PshBI	ATTAAT	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	483
PsuI	RGATCY	1 cut(s)	653
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	2 cut(s)	207, 945
RsaNI	GTAC	2 cut(s)	206, 944
RseI	CAYNNNNRTG	2 cut(s)	783, 1033
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	843
Sau3AI	GATC	5 cut(s)	189, 457, 562, 633, 653
ScaI	AGTACT	1 cut(s)	945
SchI	GAGTC	2 cut(s)	19, 364
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	1 cut(s)	814
SfcI	CTRYAG	2 cut(s)	462, 603
SmiMI	CAYNNNNRTG	2 cut(s)	783, 1033
SmlI	CTYRAG	2 cut(s)	896, 976
SmoI	CTYRAG	2 cut(s)	896, 976
Sse9I	AATT	4 cut(s)	213, 225, 498, 849
SsiI	CCGC	2 cut(s)	680, 1012
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	489
TaaI	ACNGT	2 cut(s)	541, 604
TaiI	ACGT	1 cut(s)	1010
TaqI	TCGA	1 cut(s)	8
TasI	AATT	4 cut(s)	213, 225, 498, 849
TatI	WGTACW	1 cut(s)	943
TfiI	GAWTC	5 cut(s)	308, 647, 686, 754, 959
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	1 cut(s)	842
Tsp45I	GTSAC	1 cut(s)	299
TspGWI	ACGGA	1 cut(s)	313
Van91I	CCANNNNNTGG	1 cut(s)	719
VspI	ATTAAT	1 cut(s)	18
XspI	CTAG	1 cut(s)	489
ZrmI	AGTACT	1 cut(s)	945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.