AT5G24690

Located in mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014588
Physical Location & Seq
Reverse (-)
8455457 .. 8458756
3300 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24690.1

Sequence Viewer

Length: 1566 bp
ATGTCACATATGGTGTTTCAGAGCGTTGTCGCTCCCAAACCCTTATCTCCTCTCAAACCCTGTTTACCTATCCCTCGTCCACTCGTTACTCTGCCTTGTAAGCTCCGTCGTGGCTTCGTTAGAGCTTCTTCGTCCTCGTTTCTTGTCGATGATTCAGTTTCAGGACTCGAGCGTTGCTTACAGTTACCTTCTGGAGTTGAGTTAGGCACATCTTCCTCTGGCTCTTTCTCTGCAAGTACTCAGATGTGTCCTGTGATGAAAGGCAAATTTGGTTCGGTAGGAGCTGTTACTTTGGAAAAAGGGAAGCTTGATATGACCCAGAAGATTTCTGAGACTAGCCCTGAGATTGCAACTGGAGGAGGGGGTGGAAACATTGGAAAGAGTATCAATAATGGTGGTGGCGATGGAGGTGACGATAATGGTGATGATGATGATTACTTTGATGAATTCGATGATGGTGATGAGGGAGATGATGATGGACTTTTTAGGCGTAGGATGTTTCTCGCAGAGATTTTTGATAGGAAATTCGTTGATGCTGTGTTGAATGAATGGCAAAAAACAATGATGGATTTACCTGCCGGTCTCCGTCAAGCATATGAAATGGGTTTGGTCAGCTCAGCTCAAATGGTGAAATTCCTTGCCATAAATGCCCGTCCTACAACGACTAGAATGATCTCCCGTGCCCTTCCTCAGGGATTATCGAGGGCCTTTGTTGGCAGGATGTTGGCGGATCCTGCATTTCTCTATAAACTTCTTTTGGAGCAAGCTGCCACGGTTGGATGCTCAGTTTGGTGGGAGGTGAAGAATCGTAAGAATAGACTAAAAGAGGAATGGGATCTTGCACTTATAAATGTTCTTACTGTATCAGCATGCAATGCAGCTGCTGTTTGGTTACTAGCTCCATGTCGTTCCTATGGAAACACATTCCGGTTTGACCTGCAAAATACATTACAAAAGCTACCAAATAATTTATTTGAAATGAGCTATCCTCTTAGAGAGTTCGACTTGCAAAAGAGATTTCATTCTCTTTTCTACAAGGCTGCAGAGTTGTCCATTCTTGGACTCGCAGCAGGAACACTCCAGGGTTCGTTGTCAAACGTTCTAGCAGGAAAGAAGAAGAACAGAGTATCTGTGACGGTCCCATCTATCAGCACAAATGCTCTTGGTTATGGTGCATTTCTTGGAATATATGCCAACTTGAGATATCAGCTGTTATGTGGATTTGAAAGAGGAGTGAGCAGTCACTTTGACGTCATAGGAGTAGCACTCTTCTTCGGCACTGCCTTGAGGATTATGAATGTGCAATTAGGGGAAAAGTCAAGACAAGTATGGCTAGGTGTAGAGGCAGACCCACTGGCGCAGTCAGATGATCTGCTGGCAAAAGCATACAACCGACCCTCAGAGGAAGCAGTAGCAAAGCCATCTTCAAAATGGTTCATCTCAAAGAATGCAATTGTCTCAGGGCTACTCGGGAAGAAGCAAGAAGATTCAGTTTCAGATTCTCCACCTCCAAAGGCTCGGCGAAAAAGGATAGTGAGGAAGAAGGTGGCTGCATCTGCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

521

Amino Acids

56.81

Weight (kDa)

9.15

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 239 - 408 9.3e-62 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24690
fragaria_vesca FvH4_5g29610
malus_domestica MD08G1228000.v1.1 MD15G1422000.v1.1
prunus_persica Prupe.1G567400_v2.0.a1
pyrus_communis pycom08g19880 pycom15g37400
rosa_chinensis RchiOBHm_Chr7g0222671
rosa_laevigata RLG00000002033 RLG00000002034 RLG00000002035
rosa_multiflora Rmu_sc0008131.1_g000006
rosa_roxburghii Rroxscaffold_3G00236560
rosa_rugosa Rorug07G0211900
rosa_samantha Rh7AG355800 Rh7BG344300
rosa_wichuraiana Rw7G030190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 848
AatII GACGTC 1 cut(s) 1254
Acc36I ACCTGC 2 cut(s) 583, 945
AciI CCGC 1 cut(s) 728
AclI AACGTT 1 cut(s) 1098
AclWI GGATC 3 cut(s) 725, 738, 843
AcsI RAATTY 4 cut(s) 266, 446, 524, 632
AcyI GRCGYC 1 cut(s) 1251
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 691
AgsI TTSAA 4 cut(s) 544, 977, 1226, 1428
AjnI CCWGG 1 cut(s) 1080
Alw26I GTCTC 3 cut(s) 326, 587, 1462
AlwI GGATC 3 cut(s) 725, 738, 843
AlwNI CAGNNNCTG 1 cut(s) 884
Ama87I CYCGRG 2 cut(s) 167, 1469
AoxI GGCC 1 cut(s) 705
ApeKI GCWGC 6 cut(s) 767, 878, 881, 1040, 1067, 1550
ApoI RAATTY 4 cut(s) 266, 446, 524, 632
AspLEI GCGC 1 cut(s) 1360
AspS9I GGNCC 2 cut(s) 705, 1138
AsuHPI GGTGA 5 cut(s) 422, 434, 470, 640, 811
AvaI CYCGRG 2 cut(s) 167, 1469
AvaII GGWCC 1 cut(s) 1138
AxyI CCTNAGG 1 cut(s) 690
BaeGI GKGCMC 1 cut(s) 685
BamHI GGATCC 1 cut(s) 730
BbvI GCAGC 6 cut(s) 754, 868, 890, 1027, 1079, 1537
BccI CCATC 6 cut(s) 398, 449, 470, 559, 1150, 1429
BciT130I CCWGG 1 cut(s) 1082
BcoDI GTCTC 3 cut(s) 326, 587, 1462
BfaI CTAG 5 cut(s) 336, 666, 896, 1103, 1334
BfmI CTRYAG 1 cut(s) 1041
BfuAI ACCTGC 2 cut(s) 583, 945
BisI GCNGC 6 cut(s) 768, 879, 882, 1041, 1068, 1551
BlpI GCTNAGC 1 cut(s) 616
BlsI GCNGC 6 cut(s) 769, 880, 883, 1042, 1069, 1552
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 1082
Bme18I GGWCC 1 cut(s) 1138
BmeT110I CYCGRG 2 cut(s) 167, 1469
BmgT120I GGNCC 2 cut(s) 705, 1138
BmiI GGNNCC 2 cut(s) 732, 1140
BmrFI CCNGG 1 cut(s) 1082
BmsI GCATC 3 cut(s) 523, 770, 1562
BplI GAGNNNNNCTC 4 cut(s) 973, 1005, 1251, 1283
BpmI CTGGAG 3 cut(s) 213, 375, 1064
Bpu1102I GCTNAGC 1 cut(s) 616
BpuEI CTTGAG 2 cut(s) 1219, 1306
BsaHI GRCGYC 1 cut(s) 1251
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 2 cut(s) 771, 1081
BsaWI WCCGGW 1 cut(s) 927
Bsc4I CCNNNNNNNGG 1 cut(s) 691
Bse118I RCCGGY 1 cut(s) 578
Bse1I ACTGG 2 cut(s) 358, 1359
Bse21I CCTNAGG 1 cut(s) 690
Bse3DI GCAATG 1 cut(s) 880
BseBI CCWGG 1 cut(s) 1082
BseDI CCNNGG 2 cut(s) 771, 1081
BseGI GGATG 3 cut(s) 501, 726, 785
BseLI CCNNNNNNNGG 1 cut(s) 691
BseMI GCAATG 1 cut(s) 880
BseMII CTCAG 8 cut(s) 254, 321, 333, 630, 704, 798, 1413, 1473
BseNI ACTGG 2 cut(s) 358, 1359
BseRI GAGGAG 3 cut(s) 39, 372, 1245
BseSI GKGCMC 1 cut(s) 685
BseXI GCAGC 6 cut(s) 754, 868, 890, 1027, 1079, 1537
BshFI GGCC 1 cut(s) 707
BsiHKCI CYCGRG 2 cut(s) 167, 1469
BsiSI CCGG 2 cut(s) 579, 928
BslFI GGGAC 1 cut(s) 1124
BslI CCNNNNNNNGG 1 cut(s) 691
BsmAI GTCTC 3 cut(s) 326, 587, 1462
BsmFI GGGAC 1 cut(s) 1124
BsmI GAATGC 1 cut(s) 1453
BsnI GGCC 1 cut(s) 707
Bso31I GGTCTC 1 cut(s) 587
BsoBI CYCGRG 2 cut(s) 167, 1469
Bsp1286I GDGCHC 1 cut(s) 685
Bsp143I GATC 4 cut(s) 672, 730, 835, 1369
Bsp1720I GCTNAGC 1 cut(s) 616
BspACI CCGC 1 cut(s) 728
BspANI GGCC 1 cut(s) 707
BspCNI CTCAG 8 cut(s) 253, 322, 334, 629, 703, 797, 1412, 1472
BspLI GGNNCC 2 cut(s) 732, 1140
BspMAI CTGCAG 1 cut(s) 1045
BspMI ACCTGC 2 cut(s) 583, 945
BspPI GGATC 3 cut(s) 725, 738, 843
BspTNI GGTCTC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 880
BsrFI RCCGGY 1 cut(s) 578
BsrI ACTGG 2 cut(s) 358, 1359
BssAI RCCGGY 1 cut(s) 578
BssECI CCNNGG 2 cut(s) 771, 1081
BssMI GATC 4 cut(s) 672, 730, 835, 1369
BssNI GRCGYC 1 cut(s) 1251
Bst2UI CCWGG 1 cut(s) 1082
Bst4CI ACNGT 4 cut(s) 183, 775, 862, 1138
Bst6I CTCTTC 1 cut(s) 1274
BstACI GRCGYC 1 cut(s) 1251
BstAPI GCANNNNNTGC 1 cut(s) 875
BstC8I GCNNGC 3 cut(s) 765, 871, 1377
BstDEI CTNAG 9 cut(s) 240, 330, 342, 616, 690, 784, 992, 1399, 1459
BstDSI CCRYGG 1 cut(s) 771
BstENI CCTNNNNNAGG 1 cut(s) 689
BstF5I GGATG 3 cut(s) 501, 726, 785
BstHHI GCGC 1 cut(s) 1360
BstKTI GATC 4 cut(s) 675, 733, 838, 1372
BstMAI GTCTC 3 cut(s) 326, 587, 1462
BstMBI GATC 4 cut(s) 672, 730, 835, 1369
BstMWI GCNNNNNNNGC 5 cut(s) 100, 647, 734, 875, 1556
BstNI CCWGG 1 cut(s) 1082
BstNSI RCATGY 1 cut(s) 873
BstSCI CCNGG 1 cut(s) 1080
BstSFI CTRYAG 1 cut(s) 1041
BstSLI GKGCMC 1 cut(s) 685
BstV1I GCAGC 6 cut(s) 754, 868, 890, 1027, 1079, 1537
BstX2I RGATCY 2 cut(s) 730, 835
BstYI RGATCY 2 cut(s) 730, 835
Bsu36I CCTNAGG 1 cut(s) 690
BsuRI GGCC 1 cut(s) 707
BtgI CCRYGG 1 cut(s) 771
BtgZI GCGATG 1 cut(s) 417
BtsCI GGATG 3 cut(s) 501, 726, 785
BtsI GCAGTG 1 cut(s) 1278
BtsIMutI CAGTG 2 cut(s) 1278, 1352
BveI ACCTGC 2 cut(s) 583, 945
Cac8I GCNNGC 3 cut(s) 765, 871, 1377
CaiI CAGNNNCTG 1 cut(s) 884
CfoI GCGC 1 cut(s) 1360
Cfr10I RCCGGY 1 cut(s) 578
Cfr13I GGNCC 2 cut(s) 705, 1138
Csp6I GTAC 1 cut(s) 237
CspCI CAANNNNNGTGG 2 cut(s) 376, 411
CviAII CATG 2 cut(s) 870, 903
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 9 cut(s) 240, 330, 342, 616, 690, 784, 992, 1399, 1459
DpnI GATC 4 cut(s) 674, 732, 837, 1371
DpnII GATC 4 cut(s) 672, 730, 835, 1369
Eam1104I CTCTTC 1 cut(s) 1274
EarI CTCTTC 1 cut(s) 1274
EciI GGCGGA 1 cut(s) 743
Eco31I GGTCTC 1 cut(s) 587
Eco32I GATATC 1 cut(s) 1205
Eco47I GGWCC 1 cut(s) 1138
Eco81I CCTNAGG 1 cut(s) 690
Eco88I CYCGRG 2 cut(s) 167, 1469
EcoNI CCTNNNNNAGG 1 cut(s) 689
EcoO109I RGGNCCY 1 cut(s) 705
EcoRI GAATTC 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 1080
EcoRV GATATC 1 cut(s) 1205
FaeI CATG 2 cut(s) 873, 906
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 1124
FatI CATG 2 cut(s) 869, 902
FauNDI CATATG 2 cut(s) 9, 595
Fnu4HI GCNGC 6 cut(s) 768, 879, 882, 1041, 1068, 1551
FokI GGATG 3 cut(s) 508, 733, 792
Fsp4HI GCNGC 6 cut(s) 768, 879, 882, 1041, 1068, 1551
FspBI CTAG 5 cut(s) 336, 666, 896, 1103, 1334
GlaI GCGC 1 cut(s) 1359
GluI GCNGC 6 cut(s) 768, 879, 882, 1041, 1068, 1551
GsuI CTGGAG 3 cut(s) 213, 375, 1064
HaeIII GGCC 1 cut(s) 707
HapII CCGG 2 cut(s) 579, 928
HhaI GCGC 1 cut(s) 1360
Hin1I GRCGYC 1 cut(s) 1251
Hin1II CATG 2 cut(s) 873, 906
Hin6I GCGC 1 cut(s) 1358
HinP1I GCGC 1 cut(s) 1358
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 6 cut(s) 152, 165, 805, 1062, 1487, 1499
HpaII CCGG 2 cut(s) 579, 928
HphI GGTGA 5 cut(s) 422, 434, 470, 640, 811
Hpy166II GTNNAC 2 cut(s) 65, 80
Hpy188I TCNGA 6 cut(s) 21, 243, 331, 1366, 1402, 1498
Hpy188III TCNNGA 4 cut(s) 162, 192, 1320, 1471
Hpy8I GTNNAC 2 cut(s) 65, 80
Hpy99I CGWCG 1 cut(s) 111
HpyAV CCTTC 3 cut(s) 198, 695, 1537
HpyCH4III ACNGT 4 cut(s) 183, 775, 862, 1138
HpyCH4IV ACGT 2 cut(s) 1098, 1251
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 647, 734, 875, 1556
HpyF3I CTNAG 9 cut(s) 240, 330, 342, 616, 690, 784, 992, 1399, 1459
HpySE526I ACGT 2 cut(s) 1098, 1251
Hsp92I GRCGYC 1 cut(s) 1251
Hsp92II CATG 2 cut(s) 873, 906
HspAI GCGC 1 cut(s) 1358
Kzo9I GATC 4 cut(s) 672, 730, 835, 1369
LmnI GCTCC 5 cut(s) 37, 108, 281, 760, 904
Lsp1109I GCAGC 6 cut(s) 754, 868, 890, 1027, 1079, 1537
LweI GCATC 3 cut(s) 523, 770, 1562
MaeI CTAG 5 cut(s) 336, 666, 896, 1103, 1334
MaeII ACGT 2 cut(s) 1098, 1251
MaeIII GTNAC 8 cut(s) 3, 85, 183, 286, 410, 891, 1132, 1241
MalI GATC 4 cut(s) 674, 732, 837, 1371
MboI GATC 4 cut(s) 672, 730, 835, 1369
MfeI CAATTG 1 cut(s) 1452
MflI RGATCY 2 cut(s) 730, 835
MhlI GDGCHC 1 cut(s) 685
MluCI AATT 7 cut(s) 266, 446, 524, 632, 967, 1304, 1452
MlyI GAGTC 2 cut(s) 159, 1056
MmeI TCCRAC 1 cut(s) 757
MseI TTAA 1 cut(s) 1564
MspA1I CMGCKG 2 cut(s) 881, 1210
MspI CCGG 2 cut(s) 579, 928
MspR9I CCNGG 1 cut(s) 1082
MunI CAATTG 1 cut(s) 1452
Mva1269I GAATGC 1 cut(s) 1453
MvaI CCWGG 1 cut(s) 1082
MwoI GCNNNNNNNGC 5 cut(s) 100, 647, 734, 875, 1556
NdeI CATATG 2 cut(s) 9, 595
NdeII GATC 4 cut(s) 672, 730, 835, 1369
NlaIII CATG 2 cut(s) 873, 906
NlaIV GGNNCC 2 cut(s) 732, 1140
NmeAIII GCCGAG 1 cut(s) 1498
NmuCI GTSAC 4 cut(s) 3, 410, 1132, 1241
NspI RCATGY 1 cut(s) 873
PaeI GCATGC 1 cut(s) 873
PaeR7I CTCGAG 1 cut(s) 167
PctI GAATGC 1 cut(s) 1453
PfeI GAWTC 4 cut(s) 152, 805, 1487, 1499
PkrI GCNGC 6 cut(s) 769, 880, 883, 1042, 1069, 1552
PleI GAGTC 2 cut(s) 159, 1056
PpsI GAGTC 2 cut(s) 159, 1056
PsiI TTATAA 1 cut(s) 848
Psp1406I AACGTT 1 cut(s) 1098
Psp6I CCWGG 1 cut(s) 1080
PspGI CCWGG 1 cut(s) 1080
PspN4I GGNNCC 2 cut(s) 732, 1140
PspPI GGNCC 2 cut(s) 705, 1138
PspXI VCTCGAGB 1 cut(s) 167
PstI CTGCAG 1 cut(s) 1045
PstNI CAGNNNCTG 1 cut(s) 884
PsuI RGATCY 2 cut(s) 730, 835
PvuII CAGCTG 2 cut(s) 881, 1210
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 1564
SatI GCNGC 6 cut(s) 768, 879, 882, 1041, 1068, 1551
Sau3AI GATC 4 cut(s) 672, 730, 835, 1369
Sau96I GGNCC 2 cut(s) 705, 1138
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 2 cut(s) 159, 1056
ScrFI CCNGG 1 cut(s) 1082
SduI GDGCHC 1 cut(s) 685
SfaNI GCATC 3 cut(s) 523, 770, 1562
SfcI CTRYAG 1 cut(s) 1041
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 1 cut(s) 1138
SlaI CTCGAG 1 cut(s) 167
SmlI CTYRAG 3 cut(s) 167, 1198, 1285
SmoI CTYRAG 3 cut(s) 167, 1198, 1285
SphI GCATGC 1 cut(s) 873
Sse9I AATT 7 cut(s) 266, 446, 524, 632, 967, 1304, 1452
SsiI CCGC 1 cut(s) 728
SspMI CTAG 5 cut(s) 336, 666, 896, 1103, 1334
StyD4I CCNGG 1 cut(s) 1080
TaaI ACNGT 4 cut(s) 183, 775, 862, 1138
TaiI ACGT 2 cut(s) 1101, 1254
TaqI TCGA 5 cut(s) 147, 168, 450, 701, 1002
TasI AATT 7 cut(s) 266, 446, 524, 632, 967, 1304, 1452
TatI WGTACW 1 cut(s) 236
TfiI GAWTC 4 cut(s) 152, 805, 1487, 1499
Tru1I TTAA 1 cut(s) 1564
Tru9I TTAA 1 cut(s) 1564
TscAI CASTG 2 cut(s) 1285, 1359
TseFI GTSAC 4 cut(s) 3, 410, 1132, 1241
TseI GCWGC 6 cut(s) 767, 878, 881, 1040, 1067, 1550
Tsp45I GTSAC 4 cut(s) 3, 410, 1132, 1241
TspDTI ATGAA 7 cut(s) 272, 459, 561, 612, 1010, 1310, 1426
TspGWI ACGGA 2 cut(s) 95, 575
TspRI CASTG 2 cut(s) 1285, 1359
VpaK11BI GGWCC 1 cut(s) 1138
XagI CCTNNNNNAGG 1 cut(s) 689
XapI RAATTY 4 cut(s) 266, 446, 524, 632
XceI RCATGY 1 cut(s) 873
XcmI CCANNNNNNNNNTGG 1 cut(s) 1428
XhoI CTCGAG 1 cut(s) 167
XspI CTAG 5 cut(s) 336, 666, 896, 1103, 1334
ZraI GACGTC 1 cut(s) 1252
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.