pycom08g19880

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0014588
Physical Location & Seq
Reverse (-)
19833515 .. 19837798
4284 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g19880.4

Sequence Viewer

Length: 774 bp
ATGAAATGTGATCGATCGAGCTCTGCTCAAATGGTTAGATTTTTAGCGACCAATGCAAGGCCAACCACTACTAGGTTTATTTCTCGTGCGCTTCCTGATGGAATATCAAGAGCATTCATTGGCAGAATGCTGGCAGATCCTGCTTTCTTATATAGGTTTCTTTTAGAGCAGGCTGCAACAATTGGTTCTTCAGTTTGGTGGGAGTTAAAGAATCGCAAGGGCAGGATAAAGAAAGAATGGGATTTGGCGCTTATAAACGTACTCACAGTAACAGCATGCAATGCTATTGTTGTTTGGTCACTTGCTCCTTGTCGTTCATACGGGAACACGTTCAAGTTTGATTTGCAAAATACATTACAGAAGCTCCCCAACAATATATTTGAGAAGAGCTACCCACTAAGGGAATTTGACCTGCAAAAGAGAGTTCACTCTTTCTTCTACAAGGCTGCTGAGTTGTGTATGGTTGGACTAACTGCTGGAGCCGTGCAAGGTTCTTTAGCAAATTTTTTGGCCCATAAAAAAGAAGGAAGGTTATCTGTGACGATCCCATCTGTCAAAGCAAATGCACTTGGTTATGGTGCCTTCCTTGGACTATATGCGAACCTGAGATATCAGCTATTATGTGGATTTGACAGAGCAATGATGAATCATTTTGATGTTATTGGAGTGGCCCTATTTTTTAGCACGACACTGAGGATTTTGAATGTGCAATTAGGAGAGCGGTCGAGGTTGGCTTGGCTTGGGGTGGAGGCTGATCCATCTGGTTCACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

258

Amino Acids

28.77

Weight (kDa)

9.87

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24690
fragaria_vesca FvH4_5g29610
malus_domestica MD08G1228000.v1.1 MD15G1422000.v1.1
prunus_persica Prupe.1G567400_v2.0.a1
pyrus_communis pycom08g19880 pycom15g37400
rosa_chinensis RchiOBHm_Chr7g0222671
rosa_laevigata RLG00000002033 RLG00000002034 RLG00000002035
rosa_multiflora Rmu_sc0008131.1_g000006
rosa_roxburghii Rroxscaffold_3G00236560
rosa_rugosa Rorug07G0211900
rosa_samantha Rh7AG355800 Rh7BG344300
rosa_wichuraiana Rw7G030190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 420
AccB1I GGYRCC 1 cut(s) 578
AccBSI CCGCTC 1 cut(s) 721
AciI CCGC 1 cut(s) 721
AclWI GGATC 3 cut(s) 131, 538, 749
AcsI RAATTY 2 cut(s) 404, 502
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 3 cut(s) 57, 72, 400
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 2 cut(s) 334, 703
AluBI AGCT 4 cut(s) 21, 364, 390, 616
AluI AGCT 4 cut(s) 21, 364, 390, 616
Alw21I GWGCWC 1 cut(s) 23
AlwI GGATC 3 cut(s) 131, 538, 749
AlwNI CAGNNNCTG 1 cut(s) 140
AoxI GGCC 3 cut(s) 59, 510, 669
ApeKI GCWGC 2 cut(s) 173, 446
ApoI RAATTY 2 cut(s) 404, 502
Asp700I GAANNNNTTC 1 cut(s) 329
AspLEI GCGC 2 cut(s) 91, 250
AspS9I GGNCC 2 cut(s) 511, 670
BanI GGYRCC 1 cut(s) 578
BanII GRGCYC 1 cut(s) 23
BauI CACGAG 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 2 cut(s) 160, 433
BccI CCATC 3 cut(s) 92, 556, 766
BceAI ACGGC 1 cut(s) 467
BfaI CTAG 1 cut(s) 72
BfoI RGCGCY 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 420
BisI GCNGC 2 cut(s) 174, 447
BlsI GCNGC 2 cut(s) 175, 448
BmgT120I GGNCC 2 cut(s) 511, 670
BmiI GGNNCC 2 cut(s) 481, 580
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 1 cut(s) 498
Bsa29I ATCGAT 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 586
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 72, 400
Bse3DI GCAATG 2 cut(s) 286, 645
BseCI ATCGAT 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 586
BseLI CCNNNNNNNGG 3 cut(s) 57, 72, 400
BseMI GCAATG 2 cut(s) 286, 645
BseMII CTCAG 3 cut(s) 441, 596, 683
BseXI GCAGC 2 cut(s) 160, 433
Bsh1285I CGRYCG 2 cut(s) 17, 725
BshFI GGCC 3 cut(s) 61, 512, 671
BshNI GGYRCC 1 cut(s) 578
BshVI ATCGAT 1 cut(s) 13
BsiEI CGRYCG 2 cut(s) 17, 725
BsiHKAI GWGCWC 1 cut(s) 23
BslI CCNNNNNNNGG 3 cut(s) 57, 72, 400
BsmI GAATGC 2 cut(s) 113, 132
BsnI GGCC 3 cut(s) 61, 512, 671
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 5 cut(s) 10, 14, 136, 543, 754
BspACI CCGC 1 cut(s) 721
BspANI GGCC 3 cut(s) 61, 512, 671
BspCNI CTCAG 3 cut(s) 442, 597, 684
BspDI ATCGAT 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 481, 580
BspMI ACCTGC 1 cut(s) 420
BspPI GGATC 3 cut(s) 131, 538, 749
BspQI GCTCTTC 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 578
BsrBI CCGCTC 1 cut(s) 721
BsrDI GCAATG 2 cut(s) 286, 645
BssECI CCNNGG 1 cut(s) 586
BssMI GATC 5 cut(s) 10, 14, 136, 543, 754
BssSI CACGAG 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 586
Bst2BI CACGAG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 380
BstAPI GCANNNNNTGC 2 cut(s) 140, 281
BstC8I GCNNGC 3 cut(s) 132, 171, 277
BstDEI CTNAG 4 cut(s) 398, 450, 605, 692
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 2 cut(s) 91, 250
BstKTI GATC 5 cut(s) 13, 17, 139, 546, 757
BstMBI GATC 5 cut(s) 10, 14, 136, 543, 754
BstMCI CGRYCG 2 cut(s) 17, 725
BstMWI GCNNNNNNNGC 3 cut(s) 53, 140, 281
BstNSI RCATGY 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 160, 433
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
Bsu15I ATCGAT 1 cut(s) 13
BsuRI GGCC 3 cut(s) 61, 512, 671
BsuTUI ATCGAT 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 689
BveI ACCTGC 1 cut(s) 420
Cac8I GCNNGC 3 cut(s) 132, 171, 277
CaiI CAGNNNCTG 1 cut(s) 140
CfoI GCGC 2 cut(s) 91, 250
Cfr13I GGNCC 2 cut(s) 511, 670
ClaI ATCGAT 1 cut(s) 13
Csp6I GTAC 1 cut(s) 260
CviAII CATG 1 cut(s) 276
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 4 cut(s) 398, 450, 605, 692
DpnI GATC 5 cut(s) 12, 16, 138, 545, 756
DpnII GATC 5 cut(s) 10, 14, 136, 543, 754
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 586
Eco24I GRGCYC 1 cut(s) 23
Eco32I GATATC 1 cut(s) 611
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 174
EcoICRI GAGCTC 1 cut(s) 21
EcoRV GATATC 1 cut(s) 611
EcoT14I CCWWGG 1 cut(s) 586
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 586
FaeI CATG 1 cut(s) 279
FatI CATG 1 cut(s) 275
Fnu4HI GCNGC 2 cut(s) 174, 447
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 174, 447
FspBI CTAG 1 cut(s) 72
GlaI GCGC 2 cut(s) 90, 249
GluI GCNGC 2 cut(s) 174, 447
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 3 cut(s) 61, 512, 671
HhaI GCGC 2 cut(s) 91, 250
Hin1II CATG 1 cut(s) 279
Hin6I GCGC 2 cut(s) 89, 248
HinP1I GCGC 2 cut(s) 89, 248
HinfI GANTC 2 cut(s) 211, 646
Hpy166II GTNNAC 2 cut(s) 427, 767
Hpy188I TCNGA 1 cut(s) 773
Hpy188III TCNNGA 2 cut(s) 95, 108
Hpy8I GTNNAC 2 cut(s) 427, 767
HpyAV CCTTC 3 cut(s) 518, 522, 592
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 2 cut(s) 258, 329
HpyCH4V TGCA 8 cut(s) 56, 176, 279, 346, 415, 487, 566, 709
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 140, 281
HpyF3I CTNAG 4 cut(s) 398, 450, 605, 692
HpySE526I ACGT 2 cut(s) 258, 329
Hsp92II CATG 1 cut(s) 279
HspAI GCGC 2 cut(s) 89, 248
Kzo9I GATC 5 cut(s) 10, 14, 136, 543, 754
LguI GCTCTTC 1 cut(s) 380
LmnI GCTCC 3 cut(s) 310, 369, 479
LpnPI CCDG 9 cut(s) 108, 116, 153, 155, 208, 425, 462, 617, 747
Lsp1109I GCAGC 2 cut(s) 160, 433
MaeI CTAG 1 cut(s) 72
MaeII ACGT 2 cut(s) 258, 329
MaeIII GTNAC 3 cut(s) 268, 297, 538
MalI GATC 5 cut(s) 12, 16, 138, 545, 756
MbiI CCGCTC 1 cut(s) 721
MboI GATC 5 cut(s) 10, 14, 136, 543, 754
MboII GAAGA 3 cut(s) 180, 397, 427
MfeI CAATTG 1 cut(s) 180
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 4 cut(s) 180, 404, 502, 710
MmeI TCCRAC 1 cut(s) 445
MnlI CCTC 3 cut(s) 687, 720, 742
MroXI GAANNNNTTC 1 cut(s) 329
MseI TTAA 1 cut(s) 206
MslI CAYNNNNRTG 1 cut(s) 654
MunI CAATTG 1 cut(s) 180
Mva1269I GAATGC 2 cut(s) 113, 132
MwoI GCNNNNNNNGC 3 cut(s) 53, 140, 281
NdeII GATC 5 cut(s) 10, 14, 136, 543, 754
NlaIII CATG 1 cut(s) 279
NlaIV GGNNCC 2 cut(s) 481, 580
NmuCI GTSAC 2 cut(s) 297, 538
NspI RCATGY 1 cut(s) 279
PaeI GCATGC 1 cut(s) 279
PciSI GCTCTTC 1 cut(s) 380
PctI GAATGC 2 cut(s) 113, 132
PdmI GAANNNNTTC 1 cut(s) 329
PfeI GAWTC 2 cut(s) 211, 646
PkrI GCNGC 2 cut(s) 175, 448
Ple19I CGATCG 1 cut(s) 17
PsiI TTATAA 1 cut(s) 254
Psp124BI GAGCTC 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 481, 580
PspPI GGNCC 2 cut(s) 511, 670
PstNI CAGNNNCTG 1 cut(s) 140
PsuI RGATCY 1 cut(s) 136
PvuI CGATCG 1 cut(s) 17
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 654
SacI GAGCTC 1 cut(s) 23
SapI GCTCTTC 1 cut(s) 380
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 2 cut(s) 174, 447
Sau3AI GATC 5 cut(s) 10, 14, 136, 543, 754
Sau96I GGNCC 2 cut(s) 511, 670
SduI GDGCHC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 654
SphI GCATGC 1 cut(s) 279
Sse9I AATT 4 cut(s) 180, 404, 502, 710
SsiI CCGC 1 cut(s) 721
SspMI CTAG 1 cut(s) 72
SstI GAGCTC 1 cut(s) 23
StyI CCWWGG 1 cut(s) 586
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 2 cut(s) 261, 332
TaqI TCGA 3 cut(s) 13, 17, 725
TasI AATT 4 cut(s) 180, 404, 502, 710
TfiI GAWTC 2 cut(s) 211, 646
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 1 cut(s) 696
TseFI GTSAC 2 cut(s) 297, 538
TseI GCWGC 2 cut(s) 173, 446
Tsp45I GTSAC 2 cut(s) 297, 538
TspDTI ATGAA 4 cut(s) 17, 106, 306, 659
TspRI CASTG 1 cut(s) 696
XapI RAATTY 2 cut(s) 404, 502
XceI RCATGY 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 329
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.