Rorug07G0211900

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0014588
Physical Location & Seq
Forward (+)
18707416 .. 18709948
2533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0211900.1

Sequence Viewer

Length: 1065 bp
ATGACATTGTCCAATGGTGTCACCATGCTCCTCCCAGAAGCACACATTGAATCCGTCCAGTCTGTAATGCCCTTCAAGATCACCGATCCGCGGCCGGCACGCCAAGTGTCGGCCGCAGACCCCGTCGGTTTGGGAATATTCCAACAGTGCCTGCACATAGTTCTCTACTACACAAAAGCAACCGAAGAGGACTCACGTTGGCTCCATGCTGGTTGGATCAAGGAATCACTTTCGAGGGCGTTGCTGGAGCAACCGCTATTTGCTGGCCGTTTACGCACGAGTGATGGGGGAGAGTTGGAGATTGTGGCAAATGACAGCGGCGTTAGACTCGTCGAAACTCGTACTCCGATGACAATGGCTGAGTTTCTGTCTTACAAGGACAGCATGGAGGATACAGAAGATAAACTTGTGTTTTGGAAAACTATTGATGAACGAAGTCCTCAGTACTCTCCTCTCTTTTATGTTCAGGTGACATATTTTCAGTGTGGAGGGAGATCAGTAGGAATTAGCTGCAGTATTCTTCTAGCAGATCTTTTGTTCAAAGAAAATTTTCTCAAGAAATGGGCTAACATCCACCACAATCTGCTTTCAGACGAGAGTCTACCTGCGACACCCTTTTATAACTTCCCACATGTTGAAAAAAGTGGAAATTCCTGCAAGAAAATATTTGTCTCTATTCCGAGCAAAAAATGTGGCAAGACAATGATCTTCAATGTTGCAGCTGAGAAGGCGGACTCGGAGAACGATGATGCATTGCAACTTTGTGTTGAAGAAGCAGAGAGCAAGTTTGGTTTTGGGAAATTGTTTGTGAAGATCAACGTTTCATCCTGCAGTGCAATCAAGGTTGAGAATTTTCAAAAAGAAGGACTTGCTAAGCCGAAACTGAGCCTAATTGCTGAAGCGGATTGGGATTATTTCGGGGCAAAGGAGGTCGAATTTCATGAAGGGAATAAGCCGGCTACTGTTTCGTATTGGTTTGGATTCATTTCTGGTGGACTTGTTATGGCAGTGCCATCATCAGCTGATCAGGAGGGTGCTTCAGTGATTGTCACAGTTCCTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

354

Amino Acids

39.31

Weight (kDa)

5.31

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 52 - 194 7.8e-23 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24690
fragaria_vesca FvH4_5g29610
malus_domestica MD08G1228000.v1.1 MD15G1422000.v1.1
prunus_persica Prupe.1G567400_v2.0.a1
pyrus_communis pycom08g19880 pycom15g37400
rosa_chinensis RchiOBHm_Chr7g0222671
rosa_laevigata RLG00000002033 RLG00000002034 RLG00000002035
rosa_multiflora Rmu_sc0008131.1_g000006
rosa_roxburghii Rroxscaffold_3G00236560
rosa_rugosa Rorug07G0211900
rosa_samantha Rh7AG355800 Rh7BG344300
rosa_wichuraiana Rw7G030190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 621
Acc36I ACCTGC 1 cut(s) 613
AccI GTMKAC 1 cut(s) 601
AccII CGCG 1 cut(s) 91
AciI CCGC 7 cut(s) 89, 91, 114, 254, 318, 731, 902
AclI AACGTT 1 cut(s) 819
AclWI GGATC 2 cut(s) 80, 224
AcoI YGGCCR 3 cut(s) 92, 111, 265
AcsI RAATTY 4 cut(s) 547, 649, 850, 935
AcuI CTGAAG 2 cut(s) 918, 1023
AfaI GTAC 2 cut(s) 343, 446
AfiI CCNNNNNNNGG 2 cut(s) 90, 109
AflIII ACRYGT 1 cut(s) 631
AgsI TTSAA 7 cut(s) 50, 76, 541, 638, 712, 770, 857
AluBI AGCT 3 cut(s) 510, 722, 1022
AluI AGCT 3 cut(s) 510, 722, 1022
Alw26I GTCTC 1 cut(s) 676
AlwI GGATC 2 cut(s) 80, 224
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 3 cut(s) 92, 111, 265
ApeKI GCWGC 2 cut(s) 510, 719
ApoI RAATTY 4 cut(s) 547, 649, 850, 935
Asp700I GAANNNNTTC 1 cut(s) 549
AsuHPI GGTGA 3 cut(s) 13, 73, 481
BauI CACGAG 1 cut(s) 277
BbvI GCAGC 2 cut(s) 497, 731
BccI CCATC 2 cut(s) 278, 1021
BceAI ACGGC 1 cut(s) 252
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BciVI GTATCC 1 cut(s) 385
BclI TGATCA 1 cut(s) 1024
BcoDI GTCTC 1 cut(s) 676
BfaI CTAG 2 cut(s) 524, 1063
BfmI CTRYAG 2 cut(s) 511, 829
BfuAI ACCTGC 1 cut(s) 613
BfuI GTATCC 1 cut(s) 385
BglII AGATCT 1 cut(s) 529
BisI GCNGC 5 cut(s) 92, 114, 319, 511, 720
BlpI GCTNAGC 1 cut(s) 873
BlsI GCNGC 5 cut(s) 93, 115, 320, 512, 721
BmcAI AGTACT 1 cut(s) 446
BmiI GGNNCC 1 cut(s) 203
BmsI GCATC 1 cut(s) 739
BoxI GACNNNNGTC 1 cut(s) 597
BpmI CTGGAG 1 cut(s) 266
Bpu1102I GCTNAGC 1 cut(s) 873
BpuEI CTTGAG 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 89
BsaXI ACNNNNNCTCC 4 cut(s) 186, 216, 328, 358
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 109
Bse118I RCCGGY 2 cut(s) 94, 955
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 752
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 2 cut(s) 570, 824
BseLI CCNNNNNNNGG 2 cut(s) 90, 109
BseMI GCAATG 1 cut(s) 752
BseMII CTCAG 4 cut(s) 351, 455, 714, 875
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 2 cut(s) 20, 441
BseX3I CGGCCG 2 cut(s) 92, 111
BseXI GCAGC 2 cut(s) 497, 731
BsgI GTGCAG 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 91
Bsh1285I CGRYCG 2 cut(s) 95, 114
BshFI GGCC 3 cut(s) 94, 113, 267
BsiEI CGRYCG 2 cut(s) 95, 114
BsiSI CCGG 2 cut(s) 95, 956
BslI CCNNNNNNNGG 2 cut(s) 90, 109
BsmAI GTCTC 1 cut(s) 676
BsnI GGCC 3 cut(s) 94, 113, 267
Bsp143I GATC 8 cut(s) 78, 85, 216, 494, 529, 705, 813, 1024
Bsp1720I GCTNAGC 1 cut(s) 873
BspACI CCGC 7 cut(s) 89, 91, 114, 254, 318, 731, 902
BspANI GGCC 3 cut(s) 94, 113, 267
BspCNI CTCAG 4 cut(s) 352, 454, 715, 876
BspFNI CGCG 1 cut(s) 91
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 1 cut(s) 203
BspMAI CTGCAG 2 cut(s) 515, 833
BspMI ACCTGC 1 cut(s) 613
BspPI GGATC 2 cut(s) 80, 224
BsrDI GCAATG 1 cut(s) 752
BsrFI RCCGGY 2 cut(s) 94, 955
BsrI ACTGG 1 cut(s) 58
BssAI RCCGGY 2 cut(s) 94, 955
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 8 cut(s) 78, 85, 216, 494, 529, 705, 813, 1024
BssSI CACGAG 1 cut(s) 277
Bst2BI CACGAG 1 cut(s) 277
Bst4CI ACNGT 3 cut(s) 147, 964, 1054
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 5 cut(s) 96, 100, 152, 265, 957
BstDEI CTNAG 5 cut(s) 360, 441, 723, 873, 884
BstDSI CCRYGG 1 cut(s) 89
BstF5I GGATG 2 cut(s) 570, 824
BstFNI CGCG 1 cut(s) 91
BstKTI GATC 8 cut(s) 81, 88, 219, 497, 532, 708, 816, 1027
BstMAI GTCTC 1 cut(s) 676
BstMBI GATC 8 cut(s) 78, 85, 216, 494, 529, 705, 813, 1024
BstMCI CGRYCG 2 cut(s) 95, 114
BstMWI GCNNNNNNNGC 2 cut(s) 273, 728
BstNSI RCATGY 1 cut(s) 635
BstPAI GACNNNNGTC 1 cut(s) 597
BstSFI CTRYAG 2 cut(s) 511, 829
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 497, 731
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BstZI CGGCCG 2 cut(s) 92, 111
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 3 cut(s) 94, 113, 267
BtgI CCRYGG 1 cut(s) 89
BtsCI GGATG 2 cut(s) 570, 824
BtsI GCAGTG 2 cut(s) 838, 1014
BtsIMutI CAGTG 5 cut(s) 152, 488, 838, 1014, 1047
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 5 cut(s) 96, 100, 152, 265, 957
CaiI CAGNNNCTG 1 cut(s) 151
CciI TCATGA 1 cut(s) 940
Cfr10I RCCGGY 2 cut(s) 94, 955
Cfr42I CCGCGG 1 cut(s) 92
Csp6I GTAC 2 cut(s) 342, 445
CspCI CAANNNNNGTGG 2 cut(s) 673, 708
CviAII CATG 5 cut(s) 25, 206, 385, 632, 941
CviQI GTAC 2 cut(s) 342, 445
DdeI CTNAG 5 cut(s) 360, 441, 723, 873, 884
DpnI GATC 8 cut(s) 80, 87, 218, 496, 531, 707, 815, 1026
DpnII GATC 8 cut(s) 78, 85, 216, 494, 529, 705, 813, 1024
EaeI YGGCCR 3 cut(s) 92, 111, 265
EagI CGGCCG 2 cut(s) 92, 111
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
EciI GGCGGA 1 cut(s) 746
EclXI CGGCCG 2 cut(s) 92, 111
Eco52I CGGCCG 2 cut(s) 92, 111
Eco57I CTGAAG 2 cut(s) 918, 1023
EcoT22I ATGCAT 1 cut(s) 754
FaeI CATG 5 cut(s) 28, 209, 388, 635, 944
FalI AAGNNNNNCTT 4 cut(s) 390, 422, 852, 884
FatI CATG 5 cut(s) 24, 205, 384, 631, 940
FbaI TGATCA 1 cut(s) 1024
FblI GTMKAC 1 cut(s) 601
Fnu4HI GCNGC 5 cut(s) 92, 114, 319, 511, 720
FokI GGATG 2 cut(s) 557, 811
Fsp4HI GCNGC 5 cut(s) 92, 114, 319, 511, 720
FspBI CTAG 2 cut(s) 524, 1063
GluI GCNGC 5 cut(s) 92, 114, 319, 511, 720
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 3 cut(s) 94, 113, 267
HapII CCGG 2 cut(s) 95, 956
Hin1II CATG 5 cut(s) 28, 209, 388, 635, 944
HinfI GANTC 7 cut(s) 50, 191, 224, 327, 598, 734, 981
HpaII CCGG 2 cut(s) 95, 956
HphI GGTGA 3 cut(s) 13, 73, 481
Hpy166II GTNNAC 3 cut(s) 272, 602, 995
Hpy188I TCNGA 4 cut(s) 348, 592, 681, 739
Hpy188III TCNNGA 4 cut(s) 76, 556, 941, 1028
Hpy8I GTNNAC 3 cut(s) 272, 602, 995
Hpy99I CGWCG 2 cut(s) 128, 335
HpyAV CCTTC 4 cut(s) 82, 721, 857, 938
HpyCH4III ACNGT 3 cut(s) 147, 964, 1054
HpyCH4IV ACGT 2 cut(s) 196, 819
HpyCH4V TGCA 8 cut(s) 154, 513, 657, 719, 752, 757, 831, 836
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 728
HpyF3I CTNAG 5 cut(s) 360, 441, 723, 873, 884
HpySE526I ACGT 2 cut(s) 196, 819
Hsp92II CATG 5 cut(s) 28, 209, 388, 635, 944
KroI GCCGGC 2 cut(s) 94, 955
KroNI GCCGGC 2 cut(s) 96, 957
Ksp22I TGATCA 1 cut(s) 1024
KspI CCGCGG 1 cut(s) 92
Kzo9I GATC 8 cut(s) 78, 85, 216, 494, 529, 705, 813, 1024
LmnI GCTCC 3 cut(s) 33, 207, 247
Lsp1109I GCAGC 2 cut(s) 497, 731
LweI GCATC 1 cut(s) 739
MaeI CTAG 2 cut(s) 524, 1063
MaeII ACGT 2 cut(s) 196, 819
MaeIII GTNAC 3 cut(s) 19, 469, 1048
MalI GATC 8 cut(s) 80, 87, 218, 496, 531, 707, 815, 1026
MboI GATC 8 cut(s) 78, 85, 216, 494, 529, 705, 813, 1024
MboII GAAGA 6 cut(s) 197, 410, 512, 700, 782, 823
MflI RGATCY 1 cut(s) 529
MluCI AATT 7 cut(s) 504, 547, 649, 800, 850, 891, 935
MlyI GAGTC 4 cut(s) 185, 321, 607, 728
MmeI TCCRAC 3 cut(s) 166, 194, 276
MnlI CCTC 9 cut(s) 41, 181, 228, 382, 450, 462, 482, 922, 1024
Mph1103I ATGCAT 1 cut(s) 754
MroNI GCCGGC 2 cut(s) 94, 955
MroXI GAANNNNTTC 1 cut(s) 549
MspA1I CMGCKG 4 cut(s) 91, 318, 722, 1022
MspI CCGG 2 cut(s) 95, 956
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 273, 728
NaeI GCCGGC 2 cut(s) 96, 957
NdeII GATC 8 cut(s) 78, 85, 216, 494, 529, 705, 813, 1024
NgoMIV GCCGGC 2 cut(s) 94, 955
NlaIII CATG 5 cut(s) 28, 209, 388, 635, 944
NlaIV GGNNCC 1 cut(s) 203
NmuCI GTSAC 3 cut(s) 19, 469, 1048
NsiI ATGCAT 1 cut(s) 754
NspI RCATGY 1 cut(s) 635
PagI TCATGA 1 cut(s) 940
PciI ACATGT 1 cut(s) 631
PdiI GCCGGC 2 cut(s) 96, 957
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 3 cut(s) 50, 224, 981
PflFI GACNNNGTC 2 cut(s) 7, 122
PkrI GCNGC 5 cut(s) 93, 115, 320, 512, 721
PleI GAGTC 4 cut(s) 185, 321, 606, 728
PpsI GAGTC 4 cut(s) 185, 321, 606, 728
PscI ACATGT 1 cut(s) 631
PshAI GACNNNNGTC 1 cut(s) 597
PsiI TTATAA 1 cut(s) 621
Psp1406I AACGTT 1 cut(s) 819
PspN4I GGNNCC 1 cut(s) 203
PstI CTGCAG 2 cut(s) 515, 833
PstNI CAGNNNCTG 1 cut(s) 151
PsuI RGATCY 1 cut(s) 529
PsyI GACNNNGTC 2 cut(s) 7, 122
PvuII CAGCTG 2 cut(s) 722, 1022
RsaI GTAC 2 cut(s) 343, 446
RsaNI GTAC 2 cut(s) 342, 445
SacII CCGCGG 1 cut(s) 92
SatI GCNGC 5 cut(s) 92, 114, 319, 511, 720
Sau3AI GATC 8 cut(s) 78, 85, 216, 494, 529, 705, 813, 1024
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 4 cut(s) 185, 321, 607, 728
SetI ASST 9 cut(s) 199, 471, 512, 607, 724, 822, 846, 933, 1024
SfaNI GCATC 1 cut(s) 739
SfcI CTRYAG 2 cut(s) 511, 829
Sfr303I CCGCGG 1 cut(s) 92
SgrBI CCGCGG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 7 cut(s) 504, 547, 649, 800, 850, 891, 935
SsiI CCGC 7 cut(s) 89, 91, 114, 254, 318, 731, 902
SspI AATATT 2 cut(s) 138, 666
SspMI CTAG 2 cut(s) 524, 1063
TaaI ACNGT 3 cut(s) 147, 964, 1054
TaiI ACGT 2 cut(s) 199, 822
TaqI TCGA 3 cut(s) 233, 333, 933
TasI AATT 7 cut(s) 504, 547, 649, 800, 850, 891, 935
TatI WGTACW 1 cut(s) 444
TauI GCSGC 3 cut(s) 94, 116, 321
TfiI GAWTC 3 cut(s) 50, 224, 981
TscAI CASTG 5 cut(s) 152, 488, 838, 1014, 1047
TseFI GTSAC 3 cut(s) 19, 469, 1048
TseI GCWGC 2 cut(s) 510, 719
Tsp45I GTSAC 3 cut(s) 19, 469, 1048
TspDTI ATGAA 5 cut(s) 444, 813, 929, 957, 973
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 5 cut(s) 152, 488, 838, 1014, 1047
Tth111I GACNNNGTC 2 cut(s) 7, 122
XapI RAATTY 4 cut(s) 547, 649, 850, 935
XceI RCATGY 1 cut(s) 635
XmiI GTMKAC 1 cut(s) 601
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 2 cut(s) 524, 1063
ZrmI AGTACT 1 cut(s) 446
Zsp2I ATGCAT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.