Rh7AG355800

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0014588
Physical Location & Seq
Forward (+)
45561317 .. 45567826
6510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG355800.1

Sequence Viewer

Length: 1074 bp
ATGTTTCTTGAAGAGCTGTTTGATCGCAAATTTGTAGATGCAGTTTTGAACGAGTGGCAAAAGACAATGATGGATTTACCTGCCGGCTTTCGGCAAGCTTATGAAATGGGATTGGTCAGCTCCGCTCAAATGGTAAGATTCTTAGCAACCAATGCCAGACCAACCACTACTAGGTTCATTTCTCGTTCACTTCCTGATGGGGTATCAAGGGCATTCATTGGCAGAATGCTTGCAGATCCTGCTTTCTTGTATAGGTTTCTGTTAGAGCAGGTTGGGACGATTGGTTGCTCAGTTTGGTGGGAAGTAAAGACTCGTAAGGAAAGGATAAAGCAAGAATGGGATCTGGCACTTATAAATGTGCTCACAGTAGCAGCATGCAATGCTGTTGTTGTCTGGTCACTTGCTCCTTGTCGTTCATATGGGAACACATTCAGGTTTGATTTGCAAAATACATTGCAAAAGCTCCCCAACAATATATTTGAGAAGAGCTACCCAATGAGGGAATTCGACCTGCCAAGGAGAGTTCATTCTTTCTTCTATAAGGCTGCTGAGTTGTGTATGGTTGGACTATCTGCCGGAGCAGTTCAAGGCGCTTTATCAAACTTTTTATCACATAAAAAGGAGGAAAGGTTATCGGTAACGATCCCTAGTGTGAAAGCAAATGCACTTGGTTATGGTGCCTTCCTAGGACTTTATGCAAATCTGAGATATCAGCTGTTATGTGGATTTGATAGAGCTGTGATGAACCATTTTGATGTTATTGGAGTGGCGCTGGTTCTAAGCACGGCATTCAGGGTTTTGAATATTCAGTTAGGTGAGAGATCAAGGTTGGCTTGGCTTGGCGTGGAGGCTGATCCGCTGGTTCAGTCGGATGATCTTTTGAAGGCTTACAGTAGGCCTTCTGAGAGTGTTGATCGGTCCTCTCCAAAATGGTTTATATCAAAGAATGCTGTTGTATCTGGACTTGGGCTCCTCGGCATTAAACAAAGGAATGATGACTCTGTTGGTGAGGGGGAATCTTCAGCCCCCAAGACACGTAGAAAGAGGATTGTCCGGAAGAAGGTGGCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

357

Amino Acids

40.17

Weight (kDa)

9.66

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 74 - 243 1e-60 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24690
fragaria_vesca FvH4_5g29610
malus_domestica MD08G1228000.v1.1 MD15G1422000.v1.1
prunus_persica Prupe.1G567400_v2.0.a1
pyrus_communis pycom08g19880 pycom15g37400
rosa_chinensis RchiOBHm_Chr7g0222671
rosa_laevigata RLG00000002033 RLG00000002034 RLG00000002035
rosa_multiflora Rmu_sc0008131.1_g000006
rosa_roxburghii Rroxscaffold_3G00236560
rosa_rugosa Rorug07G0211900
rosa_samantha Rh7AG355800 Rh7BG344300
rosa_wichuraiana Rw7G030190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
Acc36I ACCTGC 3 cut(s) 88, 259, 519
AccB1I GGYRCC 1 cut(s) 677
AccBSI CCGCTC 1 cut(s) 125
AccIII TCCGGA 1 cut(s) 1053
AciI CCGC 2 cut(s) 123, 857
AclWI GGATC 4 cut(s) 230, 348, 637, 848
AcsI RAATTY 2 cut(s) 29, 503
AcuI CTGAAG 1 cut(s) 1005
AfiI CCNNNNNNNGG 4 cut(s) 90, 171, 499, 1060
AflIII ACRYGT 1 cut(s) 1034
AgsI TTSAA 5 cut(s) 11, 49, 587, 802, 883
AluBI AGCT 7 cut(s) 16, 98, 120, 463, 489, 715, 737
AluI AGCT 7 cut(s) 16, 98, 120, 463, 489, 715, 737
Alw21I GWGCWC 1 cut(s) 363
AlwI GGATC 4 cut(s) 230, 348, 637, 848
AlwNI CAGNNNCTG 1 cut(s) 239
Aor13HI TCCGGA 1 cut(s) 1053
AoxI GGCC 1 cut(s) 896
ApeKI GCWGC 3 cut(s) 371, 545, 1067
ApoI RAATTY 2 cut(s) 29, 503
Asp700I GAANNNNTTC 1 cut(s) 428
AspA2I CCTAGG 1 cut(s) 685
AspLEI GCGC 2 cut(s) 593, 772
AspS9I GGNCC 1 cut(s) 918
AsuHPI GGTGA 2 cut(s) 827, 1019
AvaII GGWCC 1 cut(s) 918
AvrII CCTAGG 1 cut(s) 685
BanI GGYRCC 1 cut(s) 677
BanII GRGCYC 1 cut(s) 972
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 3 cut(s) 383, 532, 1054
BccI CCATC 2 cut(s) 64, 191
BceAI ACGGC 1 cut(s) 801
BfaI CTAG 3 cut(s) 171, 648, 686
BfoI RGCGCY 2 cut(s) 594, 773
BfuAI ACCTGC 3 cut(s) 88, 259, 519
BisI GCNGC 3 cut(s) 372, 546, 1068
BlnI CCTAGG 1 cut(s) 685
BlsI GCNGC 3 cut(s) 373, 547, 1069
Bme18I GGWCC 1 cut(s) 918
BmgT120I GGNCC 1 cut(s) 918
BmiI GGNNCC 2 cut(s) 679, 971
BmsI GCATC 1 cut(s) 28
BsaAI YACGTR 1 cut(s) 1037
BsaJI CCNNGG 3 cut(s) 515, 685, 973
BsaWI WCCGGW 1 cut(s) 1053
BsaXI ACNNNNNCTCC 4 cut(s) 614, 644, 954, 984
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 171, 499, 1060
Bse118I RCCGGY 1 cut(s) 83
Bse3DI GCAATG 2 cut(s) 385, 452
BseAI TCCGGA 1 cut(s) 1053
BseDI CCNNGG 3 cut(s) 515, 685, 973
BseGI GGATG 1 cut(s) 877
BseLI CCNNNNNNNGG 4 cut(s) 90, 171, 499, 1060
BseMI GCAATG 2 cut(s) 385, 452
BseMII CTCAG 4 cut(s) 303, 540, 695, 894
BseRI GAGGAG 1 cut(s) 962
BseXI GCAGC 3 cut(s) 383, 532, 1054
BshFI GGCC 1 cut(s) 898
BshNI GGYRCC 1 cut(s) 677
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 3 cut(s) 84, 576, 1054
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 4 cut(s) 90, 171, 499, 1060
BsmFI GGGAC 1 cut(s) 289
BsmI GAATGC 4 cut(s) 212, 231, 788, 952
BsnI GGCC 1 cut(s) 898
Bsp1286I GDGCHC 2 cut(s) 363, 972
Bsp13I TCCGGA 1 cut(s) 1053
Bsp143I GATC 8 cut(s) 22, 235, 340, 642, 821, 853, 874, 913
BspACI CCGC 2 cut(s) 123, 857
BspANI GGCC 1 cut(s) 898
BspCNI CTCAG 4 cut(s) 302, 541, 696, 895
BspEI TCCGGA 1 cut(s) 1053
BspLI GGNNCC 2 cut(s) 679, 971
BspMI ACCTGC 3 cut(s) 88, 259, 519
BspPI GGATC 4 cut(s) 230, 348, 637, 848
BspQI GCTCTTC 2 cut(s) 6, 479
BspT107I GGYRCC 1 cut(s) 677
BsrBI CCGCTC 1 cut(s) 125
BsrDI GCAATG 2 cut(s) 385, 452
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 515, 685, 973
BssMI GATC 8 cut(s) 22, 235, 340, 642, 821, 853, 874, 913
BssT1I CCWWGG 2 cut(s) 515, 685
Bst4CI ACNGT 2 cut(s) 367, 893
Bst6I CTCTTC 2 cut(s) 6, 479
BstAPI GCANNNNNTGC 3 cut(s) 152, 239, 380
BstBAI YACGTR 1 cut(s) 1037
BstC8I GCNNGC 4 cut(s) 85, 96, 231, 376
BstDEI CTNAG 6 cut(s) 142, 289, 549, 704, 779, 903
BstF5I GGATG 1 cut(s) 877
BstH2I RGCGCY 2 cut(s) 594, 773
BstHHI GCGC 2 cut(s) 593, 772
BstKTI GATC 8 cut(s) 25, 238, 343, 645, 824, 856, 877, 916
BstMBI GATC 8 cut(s) 22, 235, 340, 642, 821, 853, 874, 913
BstMWI GCNNNNNNNGC 3 cut(s) 152, 239, 380
BstNSI RCATGY 1 cut(s) 378
BstV1I GCAGC 3 cut(s) 383, 532, 1054
BstX2I RGATCY 2 cut(s) 235, 340
BstYI RGATCY 2 cut(s) 235, 340
BsuRI GGCC 1 cut(s) 898
BtsCI GGATG 1 cut(s) 877
BveI ACCTGC 3 cut(s) 88, 259, 519
Cac8I GCNNGC 4 cut(s) 85, 96, 231, 376
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 2 cut(s) 593, 772
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 918
CviAII CATG 1 cut(s) 375
DdeI CTNAG 6 cut(s) 142, 289, 549, 704, 779, 903
DpnI GATC 8 cut(s) 24, 237, 342, 644, 823, 855, 876, 915
DpnII GATC 8 cut(s) 22, 235, 340, 642, 821, 853, 874, 913
Eam1104I CTCTTC 2 cut(s) 6, 479
EarI CTCTTC 2 cut(s) 6, 479
Eco130I CCWWGG 2 cut(s) 515, 685
Eco147I AGGCCT 1 cut(s) 898
Eco24I GRGCYC 1 cut(s) 972
Eco32I GATATC 1 cut(s) 710
Eco47I GGWCC 1 cut(s) 918
Eco57I CTGAAG 1 cut(s) 1005
EcoRI GAATTC 1 cut(s) 503
EcoRV GATATC 1 cut(s) 710
EcoT14I CCWWGG 2 cut(s) 515, 685
EcoT38I GRGCYC 1 cut(s) 972
ErhI CCWWGG 2 cut(s) 515, 685
FaeI CATG 1 cut(s) 378
FalI AAGNNNNNCTT 2 cut(s) 817, 849
FaqI GGGAC 1 cut(s) 289
FatI CATG 1 cut(s) 374
FauNDI CATATG 1 cut(s) 418
Fnu4HI GCNGC 3 cut(s) 372, 546, 1068
FokI GGATG 1 cut(s) 884
FriOI GRGCYC 1 cut(s) 972
Fsp4HI GCNGC 3 cut(s) 372, 546, 1068
FspBI CTAG 3 cut(s) 171, 648, 686
GlaI GCGC 2 cut(s) 592, 771
GluI GCNGC 3 cut(s) 372, 546, 1068
HaeII RGCGCY 2 cut(s) 594, 773
HaeIII GGCC 1 cut(s) 898
HapII CCGG 3 cut(s) 84, 576, 1054
HhaI GCGC 2 cut(s) 593, 772
Hin1II CATG 1 cut(s) 378
Hin6I GCGC 2 cut(s) 591, 770
HinP1I GCGC 2 cut(s) 591, 770
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 4 cut(s) 138, 310, 998, 1016
HpaII CCGG 3 cut(s) 84, 576, 1054
HphI GGTGA 2 cut(s) 827, 1019
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 3 cut(s) 705, 871, 904
Hpy188III TCNNGA 4 cut(s) 8, 194, 960, 1054
Hpy8I GTNNAC 1 cut(s) 188
HpyAV CCTTC 4 cut(s) 691, 877, 909, 1054
HpyCH4III ACNGT 2 cut(s) 367, 893
HpyCH4IV ACGT 1 cut(s) 1036
HpyCH4V TGCA 8 cut(s) 41, 233, 378, 445, 457, 665, 698, 1070
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 239, 380
HpyF3I CTNAG 6 cut(s) 142, 289, 549, 704, 779, 903
HpySE526I ACGT 1 cut(s) 1036
Hsp92II CATG 1 cut(s) 378
HspAI GCGC 2 cut(s) 591, 770
Kpn2I TCCGGA 1 cut(s) 1053
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Kzo9I GATC 8 cut(s) 22, 235, 340, 642, 821, 853, 874, 913
LguI GCTCTTC 2 cut(s) 6, 479
LmnI GCTCC 5 cut(s) 125, 409, 468, 578, 975
Lsp1109I GCAGC 3 cut(s) 383, 532, 1054
LweI GCATC 1 cut(s) 28
MaeI CTAG 3 cut(s) 171, 648, 686
MaeII ACGT 1 cut(s) 1036
MaeIII GTNAC 2 cut(s) 396, 637
MalI GATC 8 cut(s) 24, 237, 342, 644, 823, 855, 876, 915
MbiI CCGCTC 1 cut(s) 125
MboI GATC 8 cut(s) 22, 235, 340, 642, 821, 853, 874, 913
MboII GAAGA 5 cut(s) 23, 496, 526, 1011, 1069
MflI RGATCY 2 cut(s) 235, 340
MhlI GDGCHC 2 cut(s) 363, 972
MluCI AATT 2 cut(s) 29, 503
MlyI GAGTC 2 cut(s) 304, 992
MmeI TCCRAC 2 cut(s) 544, 849
MnlI CCTC 7 cut(s) 492, 616, 841, 931, 983, 1003, 1038
MroI TCCGGA 1 cut(s) 1053
MroNI GCCGGC 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 428
MseI TTAA 1 cut(s) 981
MslI CAYNNNNRTG 1 cut(s) 753
MspA1I CMGCKG 2 cut(s) 715, 859
MspI CCGG 3 cut(s) 84, 576, 1054
Mva1269I GAATGC 4 cut(s) 212, 231, 788, 952
MwoI GCNNNNNNNGC 3 cut(s) 152, 239, 380
NaeI GCCGGC 1 cut(s) 85
NdeI CATATG 1 cut(s) 418
NdeII GATC 8 cut(s) 22, 235, 340, 642, 821, 853, 874, 913
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 1 cut(s) 378
NlaIV GGNNCC 2 cut(s) 679, 971
NmeAIII GCCGAG 1 cut(s) 954
NmuCI GTSAC 1 cut(s) 396
NspI RCATGY 1 cut(s) 378
PaeI GCATGC 1 cut(s) 378
PceI AGGCCT 1 cut(s) 898
PciSI GCTCTTC 2 cut(s) 6, 479
PctI GAATGC 4 cut(s) 212, 231, 788, 952
PdiI GCCGGC 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 138, 1016
PkrI GCNGC 3 cut(s) 373, 547, 1069
PleI GAGTC 2 cut(s) 304, 992
PpsI GAGTC 2 cut(s) 304, 992
Ppu21I YACGTR 1 cut(s) 1037
PsiI TTATAA 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 679, 971
PspPI GGNCC 1 cut(s) 918
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 2 cut(s) 235, 340
PvuII CAGCTG 1 cut(s) 715
RseI CAYNNNNRTG 1 cut(s) 753
SapI GCTCTTC 2 cut(s) 6, 479
SaqAI TTAA 1 cut(s) 981
SatI GCNGC 3 cut(s) 372, 546, 1068
Sau3AI GATC 8 cut(s) 22, 235, 340, 642, 821, 853, 874, 913
Sau96I GGNCC 1 cut(s) 918
SchI GAGTC 2 cut(s) 304, 992
SduI GDGCHC 2 cut(s) 363, 972
SfaNI GCATC 1 cut(s) 28
SinI GGWCC 1 cut(s) 918
SmiMI CAYNNNNRTG 1 cut(s) 753
SphI GCATGC 1 cut(s) 378
Sse9I AATT 2 cut(s) 29, 503
SseBI AGGCCT 1 cut(s) 898
SsiI CCGC 2 cut(s) 123, 857
SspI AATATT 1 cut(s) 805
SspMI CTAG 3 cut(s) 171, 648, 686
StuI AGGCCT 1 cut(s) 898
StyI CCWWGG 2 cut(s) 515, 685
TaaI ACNGT 2 cut(s) 367, 893
TaiI ACGT 1 cut(s) 1039
TaqI TCGA 1 cut(s) 507
TaqII GACCGA 1 cut(s) 906
TasI AATT 2 cut(s) 29, 503
TfiI GAWTC 2 cut(s) 138, 1016
Tru1I TTAA 1 cut(s) 981
Tru9I TTAA 1 cut(s) 981
TseFI GTSAC 1 cut(s) 396
TseI GCWGC 3 cut(s) 371, 545, 1067
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 6 cut(s) 117, 166, 205, 405, 515, 758
VpaK11BI GGWCC 1 cut(s) 918
XapI RAATTY 2 cut(s) 29, 503
XceI RCATGY 1 cut(s) 378
XmaJI CCTAGG 1 cut(s) 685
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 3 cut(s) 171, 648, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.