AT5G24860

Flowering-promoting factor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011835
Physical Location & Seq
Forward (+)
8541558 .. 8542473
916 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24860.2

Sequence Viewer

Length: 333 bp
ATGTCAGGCGTGTGGGTCTTCAAGAACGGAGTGATAAGACTTGTGGAGAACCCTAACCAGTCAGGATCCGACACACAGAACCGAAGGAAAGTGATGGTCTATTTACCGACAGGAGAAGTGGTCTCATCTTACTCGACGCTCGAGCAGATCCTCCAGAGTCTTGGATGGGAGAGATACTTTGGCGGCGGCGACACAGATCTCCTCCAATTCCACAAACGCTCCTCCATTGATCTCATTTCCCTGCCTAGAGATTTCACCAAATTCAACTCCGTTTACATGTACGATATCGTCGTCAAGAACCCTAATTACTTCCATGTCCGAGACTCCCATTGA

Protein Analysis

110

Amino Acids

12.72

Weight (kDa)

8.02

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10625 AT5G24860 AT5G24860 AT5G24860
fragaria_vesca FvH4_2g30770
malus_domestica MD08G1131700.v1.1 MD15G1109300.v1.1
prunus_persica Prupe.1G461600_v2.0.a1
pyrus_communis pycom08g11030
rosa_chinensis RchiOBHm_Chr6g0312131
rosa_laevigata RLG00000010352
rosa_multiflora Rmu_sc0004065.1_g000006
rosa_roxburghii Rroxscaffold_7G00157040
rosa_rugosa Rorug06G0392900
rosa_samantha Rh6AG509800 Rh6BG520700 Rh6CG526800 Rh6DG512100
rosa_wichuraiana Rw6G044360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 183, 186
AclWI GGATC 3 cut(s) 60, 73, 142
AcsI RAATTY 1 cut(s) 260
AfaI GTAC 1 cut(s) 281
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 2 cut(s) 22, 265
Alw26I GTCTC 2 cut(s) 127, 315
AlwI GGATC 3 cut(s) 60, 73, 142
Ama87I CYCGRG 1 cut(s) 140
ApoI RAATTY 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 140
BamHI GGATCC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 10
BccI CCATC 2 cut(s) 88, 159
BcoDI GTCTC 2 cut(s) 127, 315
BfaI CTAG 1 cut(s) 246
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 184, 187
BlsI GCNGC 2 cut(s) 185, 188
BmeT110I CYCGRG 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 10
BpmI CTGGAG 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 127
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 203, 233
Bse1I ACTGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 2 cut(s) 191, 211
BsiHKCI CYCGRG 1 cut(s) 140
BsmAI GTCTC 2 cut(s) 127, 315
Bso31I GGTCTC 1 cut(s) 127
BsoBI CYCGRG 1 cut(s) 140
Bsp143I GATC 4 cut(s) 65, 147, 196, 229
BspACI CCGC 2 cut(s) 183, 186
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 3 cut(s) 60, 73, 142
BspTNI GGTCTC 1 cut(s) 127
BsrI ACTGG 1 cut(s) 58
BssMI GATC 4 cut(s) 65, 147, 196, 229
BstF5I GGATG 1 cut(s) 170
BstKTI GATC 4 cut(s) 68, 150, 199, 232
BstMAI GTCTC 2 cut(s) 127, 315
BstMBI GATC 4 cut(s) 65, 147, 196, 229
BstNSI RCATGY 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 10
BstX2I RGATCY 3 cut(s) 65, 147, 196
BstXI CCANNNNNNTGG 1 cut(s) 161
BstYI RGATCY 3 cut(s) 65, 147, 196
BtsCI GGATG 1 cut(s) 170
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 280
CviAII CATG 2 cut(s) 277, 314
CviQI GTAC 1 cut(s) 280
DpnI GATC 4 cut(s) 67, 149, 198, 231
DpnII GATC 4 cut(s) 65, 147, 196, 229
Eco31I GGTCTC 1 cut(s) 127
Eco32I GATATC 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 140
EcoRV GATATC 1 cut(s) 286
FaeI CATG 2 cut(s) 280, 317
FaiI YATR 2 cut(s) 278, 315
FatI CATG 2 cut(s) 276, 313
Fnu4HI GCNGC 2 cut(s) 184, 187
FokI GGATG 1 cut(s) 177
Fsp4HI GCNGC 2 cut(s) 184, 187
FspBI CTAG 1 cut(s) 246
GluI GCNGC 2 cut(s) 184, 187
GsuI CTGGAG 1 cut(s) 137
HgaI GACGC 1 cut(s) 145
Hin1II CATG 2 cut(s) 280, 317
HinfI GANTC 2 cut(s) 157, 323
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 2 cut(s) 70, 320
Hpy188III TCNNGA 4 cut(s) 22, 63, 154, 295
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 2 cut(s) 139, 293
HpyAV CCTTC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 280, 317
Kzo9I GATC 4 cut(s) 65, 147, 196, 229
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 5 cut(s) 48, 71, 96, 167, 254
MaeI CTAG 1 cut(s) 246
MalI GATC 4 cut(s) 67, 149, 198, 231
MboI GATC 4 cut(s) 65, 147, 196, 229
MboII GAAGA 1 cut(s) 10
MflI RGATCY 3 cut(s) 65, 147, 196
MluCI AATT 3 cut(s) 206, 260, 304
MlyI GAGTC 2 cut(s) 166, 317
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 3 cut(s) 161, 212, 232
NdeII GATC 4 cut(s) 65, 147, 196, 229
NlaIII CATG 2 cut(s) 280, 317
NlaIV GGNNCC 1 cut(s) 67
NspI RCATGY 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 140
PciI ACATGT 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PkrI GCNGC 2 cut(s) 185, 188
PleI GAGTC 2 cut(s) 165, 317
PpsI GAGTC 2 cut(s) 165, 317
PscI ACATGT 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 67
PspXI VCTCGAGB 1 cut(s) 140
PsrI GAACNNNNNNTAC 2 cut(s) 290, 322
PsuI RGATCY 3 cut(s) 65, 147, 196
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SatI GCNGC 2 cut(s) 184, 187
Sau3AI GATC 4 cut(s) 65, 147, 196, 229
SchI GAGTC 2 cut(s) 166, 317
Sfr274I CTCGAG 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 3 cut(s) 206, 260, 304
SsiI CCGC 2 cut(s) 183, 186
SspMI CTAG 1 cut(s) 246
TaqI TCGA 2 cut(s) 134, 141
TasI AATT 3 cut(s) 206, 260, 304
TauI GCSGC 2 cut(s) 186, 189
TspGWI ACGGA 2 cut(s) 42, 259
XapI RAATTY 1 cut(s) 260
XceI RCATGY 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 140
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.