Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011835

Physical Location & Seq

Genomic Coordinates Forward (+)

883235 .. 883510

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGCGCCTGGTGGATGATTCGTCTTCCTCCCGGAGGAAGGCGTTGGTGCACTTGCCCAGCGGCCAGGTGGTGAATTCCTATTCTGCGCTGGAGCGAATCCTCACCGGGCTAGGGTGGGAGAGGTACTACGGCGGCGACCCCGACCTGTACCAATTCCACAAGCACTCTTCCATCGACCTAATTTCTCTGCCCAGAGACTTCAGCAAGTTCAACTCCGTTTACATGTACGACATCGTCATTAAAAACCCCAATCTCTTCCACGTCAGAGACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009909 GO:0009911 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

10.56

Weight (kDa)

8.06

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10625 AT5G24860 AT5G24860 AT5G24860
fragaria_vesca	FvH4_2g30770
malus_domestica	MD08G1131700.v1.1 MD15G1109300.v1.1
prunus_persica	Prupe.1G461600_v2.0.a1
pyrus_communis	pycom08g11030
rosa_chinensis	RchiOBHm_Chr6g0312131
rosa_laevigata	RLG00000010352
rosa_multiflora	Rmu_sc0004065.1_g000006
rosa_roxburghii	Rroxscaffold_7G00157040
rosa_rugosa	Rorug06G0392900
rosa_samantha	Rh6AG509800 Rh6BG520700 Rh6CG526800 Rh6DG512100
rosa_wichuraiana	Rw6G044360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	60, 132
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	184
AfaI	GTAC	3 cut(s)	125, 149, 227
AfiI	CCNNNNNNNGG	3 cut(s)	33, 37, 111
AflIII	ACRYGT	2 cut(s)	222, 270
AgsI	TTSAA	1 cut(s)	211
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	2 cut(s)	6, 63
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	2 cut(s)	189, 261
Alw44I	GTGCAC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	61
ApaLI	GTGCAC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	73
AspLEI	GCGC	2 cut(s)	6, 88
AsuC2I	CCSGG	2 cut(s)	31, 106
AsuHPI	GGTGA	2 cut(s)	82, 94
BaeGI	GKGCMC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	51
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	2 cut(s)	8, 65
BcnI	CCSGG	2 cut(s)	31, 106
BcoDI	GTCTC	2 cut(s)	189, 261
BfaI	CTAG	1 cut(s)	110
BisI	GCNGC	2 cut(s)	61, 133
BlsI	GCNGC	2 cut(s)	62, 134
Bme1390I	CCNGG	4 cut(s)	8, 31, 65, 106
BmgBI	CACGTC	1 cut(s)	262
BmrFI	CCNGG	4 cut(s)	8, 31, 65, 106
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	110
BpuMI	CCSGG	2 cut(s)	31, 106
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 37, 111
BseBI	CCWGG	2 cut(s)	8, 65
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	3 cut(s)	33, 37, 111
BseSI	GKGCMC	1 cut(s)	51
BseYI	CCCAGC	1 cut(s)	56
BshFI	GGCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	31, 105
BslI	CCNNNNNNNGG	3 cut(s)	33, 37, 111
BsmAI	GTCTC	2 cut(s)	189, 261
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	51
BspACI	CCGC	2 cut(s)	60, 132
BspANI	GGCC	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	8, 65
Bst6I	CTCTTC	2 cut(s)	172, 260
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	19
BstHHI	GCGC	2 cut(s)	6, 88
BstMAI	GTCTC	2 cut(s)	189, 261
BstNI	CCWGG	2 cut(s)	8, 65
BstNSI	RCATGY	2 cut(s)	226, 274
BstSCI	CCNGG	4 cut(s)	6, 29, 63, 104
BstSLI	GKGCMC	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	19
CfoI	GCGC	2 cut(s)	6, 88
Csp6I	GTAC	3 cut(s)	124, 148, 226
CviAII	CATG	2 cut(s)	223, 271
CviJI	RGCY	2 cut(s)	63, 109
CviKI_1	RGCY	2 cut(s)	63, 109
CviQI	GTAC	3 cut(s)	124, 148, 226
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	172, 260
EarI	CTCTTC	2 cut(s)	172, 260
Eco57I	CTGAAG	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	6, 63
FaeI	CATG	2 cut(s)	226, 274
FaiI	YATR	2 cut(s)	224, 272
FatI	CATG	2 cut(s)	222, 270
Fnu4HI	GCNGC	2 cut(s)	61, 133
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	61, 133
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	2 cut(s)	5, 87
GluI	GCNGC	2 cut(s)	61, 133
GsaI	CCCAGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	2 cut(s)	31, 105
HhaI	GCGC	2 cut(s)	6, 88
Hin1II	CATG	2 cut(s)	226, 274
Hin6I	GCGC	2 cut(s)	4, 86
HinP1I	GCGC	2 cut(s)	4, 86
HinfI	GANTC	2 cut(s)	17, 96
HpaII	CCGG	2 cut(s)	31, 105
HphI	GGTGA	2 cut(s)	82, 94
Hpy166II	GTNNAC	2 cut(s)	49, 220
Hpy188I	TCNGA	1 cut(s)	266
Hpy8I	GTNNAC	2 cut(s)	49, 220
HpyAV	CCTTC	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	49
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	226, 274
HspAI	GCGC	2 cut(s)	4, 86
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	9 cut(s)	20, 44, 50, 70, 74, 77, 118, 158, 205
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	261
MboII	GAAGA	3 cut(s)	15, 159, 247
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	3 cut(s)	73, 152, 180
MnlI	CCTC	4 cut(s)	27, 37, 110, 114
MseI	TTAA	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	2 cut(s)	31, 105
MspR9I	CCNGG	4 cut(s)	8, 31, 65, 106
MvaI	CCWGG	2 cut(s)	8, 65
NciI	CCSGG	2 cut(s)	31, 106
NlaIII	CATG	2 cut(s)	226, 274
NspI	RCATGY	2 cut(s)	226, 274
PciI	ACATGT	2 cut(s)	222, 270
PfeI	GAWTC	2 cut(s)	17, 96
PflFI	GACNNNGTC	1 cut(s)	233
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	62, 134
PscI	ACATGT	2 cut(s)	222, 270
Psp6I	CCWGG	2 cut(s)	6, 63
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	2 cut(s)	6, 63
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	3 cut(s)	125, 149, 227
RsaNI	GTAC	3 cut(s)	124, 148, 226
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	61, 133
ScrFI	CCNGG	4 cut(s)	8, 31, 65, 106
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	5 cut(s)	69, 125, 147, 180, 264
Sse9I	AATT	3 cut(s)	73, 152, 180
SsiI	CCGC	2 cut(s)	60, 132
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	4 cut(s)	6, 29, 63, 104
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	174
TasI	AATT	3 cut(s)	73, 152, 180
TauI	GCSGC	2 cut(s)	63, 135
TfiI	GAWTC	2 cut(s)	17, 96
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TspGWI	ACGGA	1 cut(s)	205
Tth111I	GACNNNGTC	1 cut(s)	233
VneI	GTGCAC	1 cut(s)	47
XagI	CCTNNNNNAGG	1 cut(s)	31
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	2 cut(s)	226, 274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.