Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011835

Physical Location & Seq

Genomic Coordinates Reverse (-)

12413768 .. 12414085

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1131700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTCTGGGGTTTGGACTTTTAAGAATGGGGTGATGCGCCTCGTCGAAAATCCTCAGGCCGAGACATCTTCCAGGAAGAAGGCTTTGGTGCACTTGCCGAGTGGAGAGGTGGTGTCGTCCTACTCGATGCTGGAGGAAATATTGACGGGGTTAGGGTGGGAGAGGTACTATGGAAGAGACCCCGATCTCTTCCAGTTCCACAAGCGATCTTCGATCGATCTAATCTCTCTCCCCGGAGACTTCTCCAAGTTCAACTCTGTTCACATGTACGATATTGTCATTAAAAACCCCAACATCTTCCACGTTCGGGACACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009909 GO:0009911 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

12.06

Weight (kDa)

6.91

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10625 AT5G24860 AT5G24860 AT5G24860
fragaria_vesca	FvH4_2g30770
malus_domestica	MD08G1131700.v1.1 MD15G1109300.v1.1
prunus_persica	Prupe.1G461600_v2.0.a1
pyrus_communis	pycom08g11030
rosa_chinensis	RchiOBHm_Chr6g0312131
rosa_laevigata	RLG00000010352
rosa_multiflora	Rmu_sc0004065.1_g000006
rosa_roxburghii	Rroxscaffold_7G00157040
rosa_rugosa	Rorug06G0392900
rosa_samantha	Rh6AG509800 Rh6BG520700 Rh6CG526800 Rh6DG512100
rosa_wichuraiana	Rw6G044360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	167, 269
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflIII	ACRYGT	2 cut(s)	264, 312
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	71
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	3 cut(s)	56, 171, 231
Alw44I	GTGCAC	1 cut(s)	89
AoxI	GGCC	1 cut(s)	57
ApaLI	GTGCAC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	39
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	43
AxyI	CCTNAGG	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	56, 171, 231
Bme1390I	CCNGG	2 cut(s)	73, 234
BmrFI	CCNGG	2 cut(s)	73, 234
BmsI	GCATC	2 cut(s)	24, 117
BpmI	CTGGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	234
Bsa29I	ATCGAT	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	193
Bse21I	CCTNAGG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	193
BseSI	GKGCMC	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	59
BshVI	ATCGAT	1 cut(s)	216
BsiEI	CGRYCG	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	3 cut(s)	56, 171, 231
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	4 cut(s)	184, 206, 213, 217
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	67
BspDI	ATCGAT	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	4 cut(s)	184, 206, 213, 217
Bst2UI	CCWGG	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	169, 194
BstBAI	YACGTR	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	4 cut(s)	187, 209, 216, 220
BstMAI	GTCTC	3 cut(s)	56, 171, 231
BstMBI	GATC	4 cut(s)	184, 206, 213, 217
BstMCI	CGRYCG	1 cut(s)	216
BstNI	CCWGG	1 cut(s)	73
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	2 cut(s)	71, 232
BstSLI	GKGCMC	1 cut(s)	93
Bsu15I	ATCGAT	1 cut(s)	216
Bsu36I	CCTNAGG	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	59
BsuTUI	ATCGAT	1 cut(s)	216
CfoI	GCGC	1 cut(s)	39
ClaI	ATCGAT	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	166, 268
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	2 cut(s)	59, 83
CviKI_1	RGCY	2 cut(s)	59, 83
CviQI	GTAC	2 cut(s)	166, 268
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	4 cut(s)	186, 208, 215, 219
DpnII	GATC	4 cut(s)	184, 206, 213, 217
Eam1104I	CTCTTC	2 cut(s)	169, 194
EarI	CTCTTC	2 cut(s)	169, 194
Eco31I	GGTCTC	1 cut(s)	171
Eco81I	CCTNAGG	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	71
FaeI	CATG	1 cut(s)	268
FaiI	YATR	2 cut(s)	171, 266
FatI	CATG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	38
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	91, 262
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	2 cut(s)	91, 262
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	73
HpyCH4IV	ACGT	2 cut(s)	303, 314
HpyCH4V	TGCA	1 cut(s)	91
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	2 cut(s)	303, 314
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	184, 206, 213, 217
LpnPI	CCDG	6 cut(s)	41, 58, 85, 116, 206, 247
LweI	GCATC	2 cut(s)	24, 117
MaeII	ACGT	2 cut(s)	303, 314
MalI	GATC	4 cut(s)	186, 208, 215, 219
MboI	GATC	4 cut(s)	184, 206, 213, 217
MboII	GAAGA	6 cut(s)	60, 88, 181, 186, 201, 289
MhlI	GDGCHC	1 cut(s)	93
MnlI	CCTC	5 cut(s)	50, 63, 100, 127, 156
MseI	TTAA	2 cut(s)	21, 282
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	2 cut(s)	73, 234
MvaI	CCWGG	1 cut(s)	73
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	4 cut(s)	184, 206, 213, 217
NlaIII	CATG	1 cut(s)	268
NmeAIII	GCCGAG	2 cut(s)	85, 123
NspI	RCATGY	1 cut(s)	268
PciI	ACATGT	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	71
Ple19I	CGATCG	1 cut(s)	216
Ppu21I	YACGTR	1 cut(s)	315
PscI	ACATGT	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PvuI	CGATCG	1 cut(s)	216
RsaI	GTAC	2 cut(s)	167, 269
RsaNI	GTAC	2 cut(s)	166, 268
SaqAI	TTAA	2 cut(s)	21, 282
Sau3AI	GATC	4 cut(s)	184, 206, 213, 217
ScrFI	CCNGG	2 cut(s)	73, 234
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	4 cut(s)	111, 167, 306, 317
SfaNI	GCATC	2 cut(s)	24, 117
SspI	AATATT	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	71, 232
TaiI	ACGT	2 cut(s)	306, 317
TaqI	TCGA	4 cut(s)	45, 125, 212, 216
Tru1I	TTAA	2 cut(s)	21, 282
Tru9I	TTAA	2 cut(s)	21, 282
VneI	GTGCAC	1 cut(s)	89
XceI	RCATGY	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.