Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0011835

Physical Location & Seq

Genomic Coordinates Reverse (-)

66504735 .. 66506068

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG512100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCTGGAGTTTGGGTTTTCAAGCAGAATGGTGTGATGCGCCTGGTGGATGATTCGTCTTCCTCCAGGAAGAAGGCGTTGGTGCACTTGCCCAGCGGCCAGGTGGTGAATTCCTATTCGGCGCTGGAGCGAATCCTCACCGGGCTAGGGTGGGAGAGGTACTACGGCGGCGACCCCGACCTGTACCAATTCCACAAGCACTCTTCCATCGACCTAATTTCTCTGCCCAGAGACTTCAGCAAGTTCAACTCCGTTTACATGTACGACATCGTCATTAAAAACCCCAATCTCTTCCACGTCAGAGACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009909 GO:0009911 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.87

Weight (kDa)

8.96

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10625 AT5G24860 AT5G24860 AT5G24860
fragaria_vesca	FvH4_2g30770
malus_domestica	MD08G1131700.v1.1 MD15G1109300.v1.1
prunus_persica	Prupe.1G461600_v2.0.a1
pyrus_communis	pycom08g11030
rosa_chinensis	RchiOBHm_Chr6g0312131
rosa_laevigata	RLG00000010352
rosa_multiflora	Rmu_sc0004065.1_g000006
rosa_roxburghii	Rroxscaffold_7G00157040
rosa_rugosa	Rorug06G0392900
rosa_samantha	Rh6AG509800 Rh6BG520700 Rh6CG526800 Rh6DG512100
rosa_wichuraiana	Rw6G044360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	96, 168
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	220
AfaI	GTAC	3 cut(s)	161, 185, 263
AfiI	CCNNNNNNNGG	1 cut(s)	147
AflIII	ACRYGT	2 cut(s)	258, 306
AgsI	TTSAA	2 cut(s)	22, 247
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	3 cut(s)	42, 65, 99
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	225, 297
Alw44I	GTGCAC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	97
ApaLI	GTGCAC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	109
AspLEI	GCGC	2 cut(s)	42, 124
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	2 cut(s)	118, 130
BaeGI	GKGCMC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	87
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	3 cut(s)	44, 67, 101
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	225, 297
BfaI	CTAG	1 cut(s)	146
BfoI	RGCGCY	1 cut(s)	125
BisI	GCNGC	2 cut(s)	97, 169
BlsI	GCNGC	2 cut(s)	98, 170
Bme1390I	CCNGG	4 cut(s)	44, 67, 101, 142
BmgBI	CACGTC	1 cut(s)	298
BmrFI	CCNGG	4 cut(s)	44, 67, 101, 142
BmsI	GCATC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	3 cut(s)	27, 49, 146
BpuMI	CCSGG	1 cut(s)	142
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
BseBI	CCWGG	3 cut(s)	44, 67, 101
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	92
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	2 cut(s)	225, 297
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	87
BspACI	CCGC	2 cut(s)	96, 168
BspANI	GGCC	1 cut(s)	99
Bst2UI	CCWGG	3 cut(s)	44, 67, 101
Bst6I	CTCTTC	2 cut(s)	208, 296
BstF5I	GGATG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	2 cut(s)	42, 124
BstMAI	GTCTC	2 cut(s)	225, 297
BstNI	CCWGG	3 cut(s)	44, 67, 101
BstNSI	RCATGY	2 cut(s)	262, 310
BstSCI	CCNGG	4 cut(s)	42, 65, 99, 140
BstSLI	GKGCMC	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	55
CfoI	GCGC	2 cut(s)	42, 124
Csp6I	GTAC	3 cut(s)	160, 184, 262
CviAII	CATG	2 cut(s)	259, 307
CviJI	RGCY	2 cut(s)	99, 145
CviKI_1	RGCY	2 cut(s)	99, 145
CviQI	GTAC	3 cut(s)	160, 184, 262
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	208, 296
EarI	CTCTTC	2 cut(s)	208, 296
Eco57I	CTGAAG	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	109
EcoRII	CCWGG	3 cut(s)	42, 65, 99
FaeI	CATG	2 cut(s)	262, 310
FaiI	YATR	2 cut(s)	260, 308
FatI	CATG	2 cut(s)	258, 306
Fnu4HI	GCNGC	2 cut(s)	97, 169
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	97, 169
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	2 cut(s)	41, 123
GluI	GCNGC	2 cut(s)	97, 169
GsaI	CCCAGC	1 cut(s)	96
GsuI	CTGGAG	3 cut(s)	27, 49, 146
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	2 cut(s)	42, 124
Hin1II	CATG	2 cut(s)	262, 310
Hin6I	GCGC	2 cut(s)	40, 122
HinP1I	GCGC	2 cut(s)	40, 122
HinfI	GANTC	2 cut(s)	53, 132
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	2 cut(s)	118, 130
Hpy166II	GTNNAC	2 cut(s)	85, 256
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	1 cut(s)	6
Hpy8I	GTNNAC	2 cut(s)	85, 256
HpyAV	CCTTC	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	1 cut(s)	85
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	262, 310
HspAI	GCGC	2 cut(s)	40, 122
LmnI	GCTCC	1 cut(s)	127
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	297
MboII	GAAGA	4 cut(s)	51, 82, 195, 283
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	3 cut(s)	109, 188, 216
MnlI	CCTC	3 cut(s)	73, 146, 150
MseI	TTAA	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	4 cut(s)	44, 67, 101, 142
MvaI	CCWGG	3 cut(s)	44, 67, 101
NciI	CCSGG	1 cut(s)	142
NlaIII	CATG	2 cut(s)	262, 310
NspI	RCATGY	2 cut(s)	262, 310
PciI	ACATGT	2 cut(s)	258, 306
PfeI	GAWTC	2 cut(s)	53, 132
PflFI	GACNNNGTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	98, 170
PscI	ACATGT	2 cut(s)	258, 306
Psp6I	CCWGG	3 cut(s)	42, 65, 99
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	3 cut(s)	42, 65, 99
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	3 cut(s)	161, 185, 263
RsaNI	GTAC	3 cut(s)	160, 184, 262
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	2 cut(s)	97, 169
ScrFI	CCNGG	4 cut(s)	44, 67, 101, 142
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	5 cut(s)	105, 161, 183, 216, 300
SfaNI	GCATC	1 cut(s)	27
Sse9I	AATT	3 cut(s)	109, 188, 216
SsiI	CCGC	2 cut(s)	96, 168
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	4 cut(s)	42, 65, 99, 140
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	1 cut(s)	210
TasI	AATT	3 cut(s)	109, 188, 216
TauI	GCSGC	2 cut(s)	99, 171
TfiI	GAWTC	2 cut(s)	53, 132
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	241
Tth111I	GACNNNGTC	1 cut(s)	269
VneI	GTGCAC	1 cut(s)	83
XapI	RAATTY	1 cut(s)	109
XceI	RCATGY	2 cut(s)	262, 310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.